Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47234 * 2 1 4 4 C 1.36071 * 116.99862 * 179.97438 * 3 2 1 5 5 C 1.35740 * 127.26387 * 0.34258 * 4 3 2 6 6 N 1.36137 * 107.07240 * 180.12683 * 5 4 3 7 7 C 1.40075 * 124.93084 * 179.83379 * 6 5 4 8 8 C 1.38868 * 120.07198 * 179.71961 * 7 6 5 9 9 C 1.38106 * 119.93276 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.06598 * 359.97438 * 9 8 7 11 11 C 1.38284 * 120.14271 * 0.02562 * 10 9 8 12 12 C 1.38114 * 120.06838 * 359.97438 * 11 10 9 13 13 N 1.28457 * 110.14102 * 359.56868 * 6 5 4 14 14 C 1.32046 * 110.20844 * 0.26618 * 13 6 5 15 15 C 1.47371 * 126.44912 * 179.97438 * 14 13 6 16 16 O 1.21638 * 120.00141 * 173.96842 * 15 14 13 17 17 N 1.34773 * 120.00280 * 353.96685 * 15 14 13 18 18 C 1.36909 * 120.00566 * 184.06916 * 17 15 14 19 19 H 1.08005 * 119.99585 * 23.93434 * 18 17 15 20 20 C 1.39012 * 120.00475 * 203.93336 * 18 17 15 21 21 N 1.31384 * 119.99800 * 24.61668 * 20 18 17 22 22 Si 1.86800 * 120.00100 * 204.61197 * 20 18 17 23 23 H 1.48497 * 109.47359 * 90.00033 * 22 20 18 24 24 H 1.48501 * 109.47121 * 210.00029 * 22 20 18 25 25 H 1.48504 * 109.46980 * 330.00034 * 22 20 18 26 26 C 1.46504 * 119.99933 * 4.07243 * 17 15 14 27 27 C 1.47188 * 109.47277 * 85.46714 * 26 17 15 28 28 N 7.47848 * 133.19112 * 335.46403 * 2 1 3 29 29 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47291 * 300.00009 * 1 2 3 31 31 H 1.08995 * 109.47120 * 60.00409 * 1 2 3 32 32 H 1.09007 * 109.47042 * 239.99934 * 2 1 3 33 33 H 1.09003 * 109.47171 * 120.00231 * 2 1 3 34 34 H 1.07993 * 126.46280 * 359.95439 * 5 4 3 35 35 H 1.08005 * 120.03348 * 359.97438 * 8 7 6 36 36 H 1.07994 * 119.96950 * 179.72196 * 9 8 7 37 37 H 1.08004 * 119.92566 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.96930 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.03594 * 180.02562 * 12 11 10 40 40 H 0.96998 * 119.99659 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.47060 * 205.47043 * 26 17 15 42 42 H 1.09002 * 109.47019 * 325.46307 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3553 1.5255 0.0005 5 6 4.3116 0.5622 -0.0054 6 7 5.5168 1.1954 0.0007 7 6 6.7609 0.5518 0.0008 8 6 7.9311 1.2995 0.0015 9 6 9.1563 0.6620 0.0022 10 6 9.2184 -0.7196 0.0027 11 6 8.0549 -1.4670 0.0020 12 6 6.8267 -0.8354 0.0014 13 7 5.3474 2.4687 0.0008 14 6 4.0589 2.7575 0.0007 15 6 3.4638 4.1057 0.0012 16 8 2.2599 4.2392 -0.1096 17 7 4.2535 5.1909 0.1246 18 6 3.6950 6.4380 0.2089 19 1 2.6801 6.5525 0.5601 20 6 4.4342 7.5569 -0.1573 21 7 5.4299 7.4374 -1.0061 22 14 4.0117 9.2303 0.5573 23 1 4.7791 9.4413 1.8110 24 1 4.3629 10.2898 -0.4222 25 1 2.5573 9.2902 0.8511 26 6 5.7097 5.0360 0.1684 27 6 6.2400 4.9928 -1.2039 28 7 6.6485 4.9600 -2.2642 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.1474 -0.5052 -0.0108 35 1 7.8832 2.3785 0.0016 36 1 10.0667 1.2428 -0.0018 37 1 10.1777 -1.2158 0.0028 38 1 8.1067 -2.5457 0.0020 39 1 5.9183 -1.4196 0.0012 40 1 5.9459 8.2181 -1.2614 41 1 6.1489 5.8793 0.7013 42 1 5.9611 4.1094 0.6845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103078577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = 97.665953 kcal Electronic energy + Delta-G solvation = -29289.444205 eV Core-core repulsion = 25238.652542 eV Total energy + Delta-G solvation = -4050.791663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66916 -39.32370 -38.36605 -38.19101 -35.54303 -34.10360 -33.43645 -31.95819 -31.56115 -31.29599 -29.71859 -28.95680 -27.25773 -25.50719 -24.04735 -23.29515 -22.80552 -21.48215 -20.50200 -19.49308 -18.40603 -17.75948 -16.92991 -16.58782 -16.42870 -16.21232 -15.95257 -15.32831 -14.99434 -14.70389 -14.45560 -14.40854 -14.04319 -13.70467 -13.48632 -13.10161 -12.93608 -12.77275 -12.61255 -12.53618 -12.49142 -11.92816 -11.85858 -11.48648 -11.39419 -11.21218 -11.13302 -11.08562 -10.85267 -10.83889 -10.40185 -10.39480 -9.96308 -9.69646 -9.23780 -9.19543 -8.73506 -8.67123 -7.96131 -7.74602 -6.48635 -3.96337 0.69292 1.11583 2.18169 2.44202 2.48635 3.17913 3.24790 3.29465 3.41804 3.60324 3.82705 4.12362 4.26458 4.32924 4.42029 4.57685 4.68557 4.80414 4.87266 4.95457 4.97580 5.04110 5.05242 5.13990 5.23485 5.37251 5.40607 5.46558 5.53277 5.56149 5.76969 5.83879 5.85039 6.08119 6.10950 6.14171 6.21647 6.29524 6.42055 6.48153 6.59888 7.09241 7.48993 7.60443 7.96014 8.13864 8.35573 9.01424 9.03459 9.21251 9.81847 10.56098 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.004531 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.940362 B = 6177.933258 C = 8811.686845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.267 6.267 4 C 0.072 3.928 5 C -0.112 4.112 6 N -0.238 5.238 7 C 0.155 3.845 8 C -0.112 4.112 9 C -0.095 4.095 10 C -0.130 4.130 11 C -0.097 4.097 12 C -0.136 4.136 13 N -0.250 5.250 14 C 0.027 3.973 15 C 0.525 3.475 16 O -0.551 6.551 17 N -0.420 5.420 18 C -0.314 4.314 19 H 0.110 0.890 20 C 0.036 3.964 21 N -0.856 5.856 22 Si 0.927 3.073 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.213 3.787 27 C 0.258 3.742 28 N -0.478 5.478 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.275 0.725 41 H 0.109 0.891 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -18.662 6.102 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.178 6.178 4 C 0.017 3.983 5 C -0.250 4.250 6 N -0.022 5.022 7 C 0.064 3.936 8 C -0.132 4.132 9 C -0.113 4.113 10 C -0.149 4.149 11 C -0.116 4.116 12 C -0.156 4.156 13 N -0.083 5.083 14 C -0.135 4.135 15 C 0.312 3.688 16 O -0.431 6.431 17 N -0.139 5.139 18 C -0.441 4.441 19 H 0.128 0.872 20 C -0.170 4.170 21 N -0.493 5.493 22 Si 0.753 3.247 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.191 1.191 26 C 0.085 3.915 27 C -0.060 4.060 28 N -0.158 5.158 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.195 0.805 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.847 -17.905 4.391 19.341 hybrid contribution -0.874 0.254 0.455 1.017 sum 4.973 -17.651 4.846 18.968 Atomic orbital electron populations 1.21728 0.92766 1.02215 1.04031 1.22760 0.96234 0.82693 1.00627 1.86339 1.15166 1.27151 1.89134 1.18719 0.83979 0.92157 1.03433 1.22343 0.84450 0.99193 1.19002 1.42151 1.04195 1.03560 1.52296 1.17636 0.82180 0.91351 1.02466 1.21046 0.90406 1.01419 1.00364 1.21100 0.97263 0.94635 0.98330 1.21238 0.98578 0.94074 1.01009 1.20937 0.91394 1.00043 0.99235 1.20806 0.99325 0.91486 1.04020 1.73900 1.18573 0.95556 1.20291 1.22335 0.87325 0.95313 1.08526 1.16621 0.86643 0.81136 0.84354 1.90697 1.13508 1.84593 1.54303 1.43441 1.03253 1.05855 1.61372 1.19726 1.01543 0.80142 1.42712 0.87220 1.25402 0.96726 1.00289 0.94603 1.69890 1.20973 1.31991 1.26445 0.85912 0.79454 0.80664 0.78690 1.20013 1.21066 1.19081 1.18985 0.82348 1.03527 0.86654 1.28936 0.92581 0.89379 0.95067 1.80846 1.10096 1.13241 1.11618 0.90802 0.91318 0.91317 0.92682 0.92625 0.80459 0.83996 0.84909 0.85511 0.85140 0.85231 0.91485 0.87298 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.05 0.64 5.87 37.16 0.22 0.86 16 3 O -0.27 -4.93 9.77 -21.80 -0.21 -5.14 16 4 C 0.07 1.36 7.05 -39.09 -0.28 1.08 16 5 C -0.11 -1.68 9.91 -16.54 -0.16 -1.84 16 6 N -0.24 -3.86 3.52 -10.40 -0.04 -3.90 16 7 C 0.16 2.10 6.66 -83.62 -0.56 1.54 16 8 C -0.11 -1.46 9.59 -39.40 -0.38 -1.84 16 9 C -0.09 -0.95 10.04 -39.61 -0.40 -1.35 16 10 C -0.13 -1.10 10.04 -39.54 -0.40 -1.49 16 11 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 12 C -0.14 -1.39 9.43 -39.39 -0.37 -1.76 16 13 N -0.25 -4.82 7.05 33.46 0.24 -4.59 16 14 C 0.03 0.59 6.82 -82.67 -0.56 0.02 16 15 C 0.53 13.52 7.57 -12.55 -0.09 13.42 16 16 O -0.55 -15.79 16.28 3.41 0.06 -15.74 16 17 N -0.42 -10.66 2.57 -119.18 -0.31 -10.97 16 18 C -0.31 -8.38 9.13 -15.00 -0.14 -8.52 16 19 H 0.11 3.03 7.56 -52.48 -0.40 2.64 16 20 C 0.04 0.92 4.73 -17.46 -0.08 0.84 16 21 N -0.86 -22.59 9.86 55.50 0.55 -22.04 16 22 Si 0.93 19.81 29.62 -169.99 -5.03 14.77 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C 0.21 4.70 4.77 -6.83 -0.03 4.67 16 27 C 0.26 6.25 12.45 -20.74 -0.26 5.99 16 28 N -0.48 -12.27 18.54 42.18 0.78 -11.49 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.58 8.11 -51.92 -0.42 0.16 16 33 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.18 1.86 6.64 -52.49 -0.35 1.51 16 35 H 0.14 2.03 7.64 -52.48 -0.40 1.63 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.13 1.06 6.65 -52.48 -0.35 0.71 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 41 H 0.11 2.33 7.08 -51.93 -0.37 1.97 16 42 H 0.11 2.16 5.18 -51.93 -0.27 1.89 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.76 366.80 -6.60 -41.36 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.65 Total: 3.00 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -3.51 Total: 9.20 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 1.22 Total: -52.99 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.16 Total: -20.87 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.76 -6.60 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103078577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.022 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds