Wall clock time and date at job start Sat Apr 11 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99881 * 2 1 4 4 C 1.53006 * 109.46880 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47382 * 64.99991 * 4 3 2 6 6 C 1.46500 * 120.00319 * 84.24291 * 5 4 3 7 7 C 1.50699 * 109.46873 * 95.31323 * 6 5 4 8 8 H 1.07997 * 120.00560 * 1.22468 * 7 6 5 9 9 C 1.37878 * 119.99974 * 181.22441 * 7 6 5 10 10 N 1.31509 * 120.00385 * 186.66520 * 9 7 6 11 11 Si 1.86810 * 119.99748 * 6.38735 * 9 7 6 12 12 H 1.48498 * 109.47059 * 273.25308 * 11 9 7 13 13 H 1.48500 * 109.46906 * 33.25536 * 11 9 7 14 14 H 1.48498 * 109.46783 * 153.25236 * 11 9 7 15 15 C 1.34783 * 119.99599 * 264.24451 * 5 4 3 16 16 O 1.21625 * 120.00455 * 5.27456 * 15 5 4 17 17 C 1.47273 * 119.99373 * 185.27479 * 15 5 4 18 18 C 1.35210 * 123.13414 * 185.79076 * 17 15 5 19 19 S 1.70944 * 108.82071 * 179.87094 * 18 17 15 20 20 C 1.70767 * 91.13186 * 0.32798 * 19 18 17 21 21 C 1.50696 * 124.72097 * 179.76771 * 20 19 18 22 22 H 1.08999 * 110.33425 * 197.29755 * 21 20 19 23 23 C 1.54479 * 110.37186 * 75.04341 * 21 20 19 24 24 C 1.54509 * 104.06330 * 217.19037 * 23 21 20 25 25 C 1.54480 * 104.06228 * 0.02562 * 24 23 21 26 26 O 1.44417 * 104.80445 * 23.97842 * 25 24 23 27 27 N 1.28647 * 110.55860 * 359.81043 * 20 19 18 28 28 H 1.08999 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47140 * 299.99587 * 1 2 3 30 30 H 1.09001 * 109.47589 * 59.99643 * 1 2 3 31 31 H 1.08993 * 109.47405 * 60.00563 * 3 2 1 32 32 H 1.09003 * 109.47361 * 300.00273 * 3 2 1 33 33 H 1.09008 * 109.46850 * 304.99543 * 4 3 2 34 34 H 1.08997 * 109.46752 * 185.00288 * 4 3 2 35 35 H 1.09003 * 109.46961 * 335.31533 * 6 5 4 36 36 H 1.09000 * 109.47075 * 215.31385 * 6 5 4 37 37 H 0.97002 * 120.00417 * 179.72401 * 10 9 7 38 38 H 1.07993 * 125.58806 * 0.02562 * 18 17 15 39 39 H 1.08997 * 110.51119 * 335.83363 * 23 21 20 40 40 H 1.09000 * 110.50725 * 98.41073 * 23 21 20 41 41 H 1.09000 * 110.51364 * 118.64708 * 24 23 21 42 42 H 1.08999 * 110.51223 * 241.21728 * 24 23 21 43 43 H 1.09001 * 110.37402 * 142.81078 * 25 24 23 44 44 H 1.09006 * 110.36993 * 265.03478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1649 1.3864 -2.4505 7 6 5.6145 1.7823 -2.5641 8 1 6.3275 1.4381 -1.8296 9 6 6.0306 2.5840 -3.6058 10 7 7.3120 2.8223 -3.7809 11 14 4.7746 3.3254 -4.7730 12 1 4.4857 2.3625 -5.8660 13 1 3.5232 3.6215 -4.0305 14 1 5.3166 4.5816 -5.3504 15 6 4.2066 -0.7626 -1.3026 16 8 3.9582 -1.4598 -0.3375 17 6 4.7596 -1.3681 -2.5258 18 6 4.9099 -2.7021 -2.6872 19 16 5.5761 -2.9989 -4.2333 20 6 5.6244 -1.3257 -4.5710 21 6 6.1354 -0.7235 -5.8544 22 1 6.3475 0.3368 -5.7172 23 6 5.1067 -0.9237 -6.9894 24 6 5.9743 -1.1948 -8.2389 25 6 7.4245 -1.1269 -7.7109 26 8 7.3181 -1.4222 -6.3012 27 7 5.1648 -0.6507 -3.5770 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1764 0.0890 35 1 3.5482 2.2822 -2.3775 36 1 3.8739 0.8158 -3.3324 37 1 7.6050 3.3831 -4.5162 38 1 4.6494 -3.4565 -1.9598 39 1 4.4653 -1.7790 -6.7769 40 1 4.5082 -0.0230 -7.1255 41 1 5.7617 -2.1840 -8.6442 42 1 5.8043 -0.4286 -8.9953 43 1 8.0449 -1.8719 -8.2089 44 1 7.8367 -0.1290 -7.8612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130412927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:33 Heat of formation + Delta-G solvation = -53.430841 kcal Electronic energy + Delta-G solvation = -28840.109096 eV Core-core repulsion = 24885.916585 eV Total energy + Delta-G solvation = -3954.192512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06899 -39.19750 -38.08929 -37.18553 -35.02096 -32.40310 -32.08172 -31.25135 -29.99340 -28.34235 -27.45549 -26.24685 -25.03649 -23.43956 -22.55999 -21.90248 -21.23198 -20.08755 -18.75239 -17.63158 -16.90244 -16.36328 -16.29756 -16.03975 -15.66938 -15.46089 -15.12573 -14.98310 -14.64265 -14.39158 -14.06184 -13.72223 -13.64094 -13.25703 -12.89205 -12.54046 -12.37124 -12.32487 -12.04674 -11.84763 -11.69141 -11.51862 -11.38989 -11.29507 -11.27127 -10.93972 -10.67375 -10.63984 -10.58504 -10.18927 -9.72035 -9.54953 -9.38596 -9.26542 -9.07784 -8.69190 -8.49265 -8.37333 -7.63484 -6.01476 -3.92638 1.01579 1.74326 2.15962 2.67085 3.22309 3.31051 3.32821 3.75431 3.94936 4.06764 4.21277 4.41039 4.52373 4.68044 4.91582 5.07076 5.27762 5.31602 5.33182 5.39337 5.40422 5.49620 5.56855 5.58351 5.60439 5.67318 5.73386 5.75375 5.78607 5.82384 5.92063 6.01890 6.02285 6.19756 6.26925 6.39905 6.60720 6.90191 7.02623 7.39433 7.52850 7.69401 8.12314 8.25237 8.57766 8.97839 9.04816 9.59810 11.12075 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.005165 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.167924 B = 5419.636391 C = 6853.990962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.574 5.574 6 C 0.209 3.791 7 C -0.488 4.488 8 H 0.071 0.929 9 C 0.078 3.922 10 N -0.897 5.897 11 Si 0.860 3.140 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.289 1.289 15 C 0.597 3.403 16 O -0.550 6.550 17 C 0.026 3.974 18 C -0.238 4.238 19 S 0.181 5.819 20 C 0.021 3.979 21 C 0.157 3.843 22 H 0.112 0.888 23 C -0.147 4.147 24 C -0.153 4.153 25 C 0.045 3.955 26 O -0.364 6.364 27 N -0.359 5.359 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.052 0.948 37 H 0.260 0.740 38 H 0.182 0.818 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 -7.285 -5.630 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.033 4.033 4 C -0.003 4.003 5 N -0.303 5.303 6 C 0.088 3.912 7 C -0.527 4.527 8 H 0.089 0.911 9 C -0.123 4.123 10 N -0.537 5.537 11 Si 0.688 3.312 12 H -0.200 1.200 13 H -0.194 1.194 14 H -0.215 1.215 15 C 0.382 3.618 16 O -0.429 6.429 17 C -0.110 4.110 18 C -0.380 4.380 19 S 0.438 5.562 20 C -0.258 4.258 21 C 0.096 3.904 22 H 0.129 0.871 23 C -0.186 4.186 24 C -0.191 4.191 25 C -0.032 4.032 26 O -0.283 6.283 27 N -0.073 5.073 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.199 0.801 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.190 -8.121 -5.695 12.251 hybrid contribution -1.160 1.489 -0.052 1.889 sum -8.350 -6.631 -5.747 12.113 Atomic orbital electron populations 1.22674 0.82434 1.02161 0.99234 1.88107 1.18311 1.27319 1.95179 1.23060 0.95336 0.85069 0.99859 1.21408 0.91096 0.99677 0.88109 1.47636 1.63885 1.06743 1.12076 1.20073 0.98042 0.89989 0.83122 1.21114 0.91850 1.28769 1.10978 0.91109 1.24668 0.94501 0.96478 0.96625 1.69922 1.13640 1.38817 1.31286 0.87108 0.82687 0.79189 0.82256 1.19962 1.19399 1.21480 1.16968 0.77449 0.82196 0.85155 1.90721 1.53917 1.61701 1.36566 1.20521 1.05168 0.89389 0.95911 1.26563 1.07470 1.00720 1.03288 1.82540 1.55290 1.10920 1.07439 1.26764 1.06078 0.93216 0.99787 1.21243 0.84548 0.97254 0.87373 0.87058 1.23032 0.98406 1.03412 0.93788 1.22940 0.95399 1.02762 0.98002 1.23397 0.96512 1.01515 0.81745 1.89155 1.44564 1.71590 1.22960 1.67601 1.08318 1.33649 0.97734 0.90157 0.94662 0.94669 0.92979 0.93272 0.89571 0.88667 0.96085 0.93058 0.92955 0.80070 0.90480 0.89662 0.90557 0.90351 0.88896 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.54 9.97 -35.33 -0.35 -6.90 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.23 5.81 -4.04 -0.02 2.21 16 5 N -0.57 -12.61 2.43 -176.38 -0.43 -13.04 16 6 C 0.21 4.88 3.87 -5.19 -0.02 4.86 16 7 C -0.49 -13.09 8.08 -34.44 -0.28 -13.37 16 8 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -26.09 13.96 55.43 0.77 -25.31 16 11 Si 0.86 20.07 27.51 -169.99 -4.68 15.39 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -6.07 6.55 56.52 0.37 -5.70 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.60 13.61 7.38 -12.59 -0.09 13.51 16 16 O -0.55 -13.04 15.80 5.16 0.08 -12.96 16 17 C 0.03 0.56 6.40 -84.52 -0.54 0.02 16 18 C -0.24 -4.30 10.62 29.65 0.31 -3.99 16 19 S 0.18 2.86 22.69 -107.50 -2.44 0.42 16 20 C 0.02 0.41 6.26 -13.61 -0.09 0.33 16 21 C 0.16 2.81 3.82 -27.11 -0.10 2.71 16 22 H 0.11 2.36 8.14 -51.93 -0.42 1.94 16 23 C -0.15 -2.05 6.62 -25.16 -0.17 -2.22 16 24 C -0.15 -1.68 7.09 -25.16 -0.18 -1.85 16 25 C 0.05 0.57 7.63 37.93 0.29 0.85 16 26 O -0.36 -6.16 11.12 -35.23 -0.39 -6.56 16 27 N -0.36 -7.94 5.63 -8.51 -0.05 -7.99 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.63 7.33 -51.92 -0.38 1.25 16 34 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 35 H 0.02 0.48 6.84 -51.93 -0.36 0.13 16 36 H 0.05 1.23 5.50 -51.93 -0.29 0.95 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.18 2.93 8.04 -52.49 -0.42 2.51 16 39 H 0.08 0.99 7.86 -51.93 -0.41 0.59 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.00 375.85 -7.97 -40.97 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.51 Total: 2.73 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 0.36 Total: 7.57 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.30 Total: -46.34 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.66 Total: -26.41 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.68 Total: 15.39 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.44 Total: 0.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.00 -7.97 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130412927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.463 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds