Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99864 * 2 1 4 4 N 1.34779 * 120.00186 * 180.02562 * 2 1 3 5 5 C 1.46505 * 124.91960 * 354.88739 * 4 2 1 6 6 C 1.53742 * 105.21885 * 180.02562 * 5 4 2 7 7 C 1.51258 * 104.50813 * 0.02562 * 6 5 4 8 8 C 1.37745 * 130.85577 * 180.29811 * 7 6 5 9 9 C 1.39697 * 120.02626 * 180.25111 * 8 7 6 10 10 C 1.47576 * 120.24268 * 179.69417 * 9 8 7 11 11 O 1.21608 * 119.99860 * 359.72480 * 10 9 8 12 12 N 1.34775 * 119.99873 * 179.72770 * 10 9 8 13 13 C 1.40535 * 119.99777 * 180.02562 * 12 10 9 14 14 C 1.40666 * 126.08634 * 359.96542 * 13 12 10 15 15 N 1.30909 * 108.38409 * 179.74123 * 14 13 12 16 16 N 1.40064 * 108.41450 * 0.44611 * 15 14 13 17 17 C 1.37314 * 126.06855 * 179.81131 * 16 15 14 18 18 H 1.08001 * 120.00009 * 179.69516 * 17 16 15 19 19 C 1.38992 * 119.99997 * 359.42154 * 17 16 15 20 20 N 1.31293 * 119.99812 * 0.26719 * 19 17 16 21 21 Si 1.86795 * 120.00092 * 180.27547 * 19 17 16 22 22 H 1.48506 * 109.47476 * 59.99609 * 21 19 17 23 23 H 1.48497 * 109.47056 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47050 * 299.99896 * 21 19 17 25 25 C 1.35693 * 126.08413 * 180.02562 * 13 12 10 26 26 C 1.39771 * 119.51534 * 359.42543 * 9 8 7 27 27 C 1.37376 * 120.07784 * 0.26972 * 26 9 8 28 28 C 1.38853 * 108.50447 * 359.97438 * 7 6 5 29 29 H 1.09002 * 109.46983 * 274.95769 * 1 2 3 30 30 H 1.08995 * 109.47412 * 34.96006 * 1 2 3 31 31 H 1.08999 * 109.46807 * 154.96585 * 1 2 3 32 32 H 1.08995 * 110.29202 * 298.95804 * 5 4 2 33 33 H 1.09004 * 110.29253 * 61.08442 * 5 4 2 34 34 H 1.09000 * 110.42246 * 118.75350 * 6 5 4 35 35 H 1.08994 * 110.42774 * 241.12075 * 6 5 4 36 36 H 1.07997 * 119.99100 * 359.96989 * 8 7 6 37 37 H 0.96992 * 120.00344 * 359.97438 * 12 10 9 38 38 H 1.07998 * 125.80207 * 0.03393 * 14 13 12 39 39 H 0.96996 * 119.99918 * 180.02562 * 20 19 17 40 40 H 1.08001 * 126.24978 * 0.02562 * 25 13 12 41 41 H 1.07998 * 119.96386 * 180.29902 * 26 9 8 42 42 H 1.08004 * 119.75590 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.5641 -2.4918 0.1059 6 6 2.7350 -3.4871 0.0600 7 6 3.9659 -2.6182 -0.0729 8 6 5.2990 -2.9524 -0.1659 9 6 6.2649 -1.9494 -0.2777 10 6 7.6950 -2.3018 -0.3709 11 8 8.0366 -3.4686 -0.3455 12 7 8.6224 -1.3304 -0.4841 13 6 9.9841 -1.6660 -0.5734 14 6 10.5197 -2.9666 -0.5568 15 7 11.8213 -2.8786 -0.6659 16 7 12.1679 -1.5238 -0.7457 17 6 13.4400 -1.0205 -0.8645 18 1 13.5951 0.0467 -0.9232 19 6 14.5283 -1.8841 -0.9036 20 7 14.3397 -3.1815 -0.8321 21 14 16.2592 -1.1991 -1.0575 22 1 16.5457 -0.3130 0.0993 23 1 17.2347 -2.3185 -1.0764 24 1 16.3734 -0.4209 -2.3172 25 6 11.0164 -0.7930 -0.6898 26 6 5.8667 -0.6100 -0.3063 27 6 4.5346 -0.2857 -0.2192 28 6 3.5660 -1.2888 -0.1015 29 1 -0.3633 0.0888 1.0238 30 1 -0.3634 0.8422 -0.5888 31 1 -0.3633 -0.9311 -0.4349 32 1 1.0267 -2.5837 1.0497 33 1 0.8891 -2.6630 -0.7327 34 1 2.7772 -4.0675 0.9816 35 1 2.6386 -4.1483 -0.8011 36 1 5.5979 -3.9900 -0.1479 37 1 8.3499 -0.3998 -0.5046 38 1 9.9531 -3.8822 -0.4735 39 1 15.0992 -3.7842 -0.8589 40 1 10.9409 0.2836 -0.7301 41 1 6.6070 0.1711 -0.3973 42 1 4.2327 0.7510 -0.2414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139584937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = 54.971183 kcal Electronic energy + Delta-G solvation = -27602.722662 eV Core-core repulsion = 23550.079615 eV Total energy + Delta-G solvation = -4052.643048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52839 -39.97398 -39.12486 -38.28807 -36.36496 -34.24791 -33.19513 -32.68018 -31.42367 -30.23781 -29.42707 -29.30928 -27.58598 -25.05747 -23.99625 -23.64406 -22.29903 -20.99301 -20.30468 -19.90562 -19.33027 -17.68113 -17.54577 -16.94855 -16.84207 -16.65661 -15.43176 -15.34116 -15.02501 -14.82692 -14.60138 -14.52042 -14.26645 -13.80606 -13.64601 -13.23007 -13.14305 -12.99094 -12.98334 -12.91438 -12.81437 -12.68348 -12.28612 -12.24039 -11.64686 -11.40195 -11.22603 -11.18648 -10.93490 -10.53972 -10.51133 -10.31482 -10.10417 -9.21600 -9.13228 -9.01231 -8.77610 -8.10495 -8.01078 -6.65161 -6.52918 -4.19384 0.71044 1.22858 2.08946 2.31452 2.93081 3.06734 3.08350 3.10762 3.58366 3.60126 3.83051 3.91602 3.95477 4.06489 4.32873 4.48668 4.52874 4.65591 4.75639 4.78100 4.80804 4.85290 5.00166 5.05077 5.10668 5.18054 5.23533 5.36416 5.38780 5.43968 5.76711 5.99428 6.09996 6.18881 6.25680 6.31180 6.50185 6.75273 6.90775 6.94339 6.99863 7.16528 7.27461 7.53596 7.88871 8.21893 8.31574 8.66486 8.89272 9.40954 9.70327 10.43065 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.001938 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.820023 B =14443.392350 C =15246.241630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.519 3.481 3 O -0.520 6.520 4 N -0.556 5.556 5 C 0.100 3.900 6 C -0.085 4.085 7 C -0.147 4.147 8 C -0.021 4.021 9 C -0.137 4.137 10 C 0.543 3.457 11 O -0.536 6.536 12 N -0.617 5.617 13 C -0.059 4.059 14 C -0.031 4.031 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.084 4.084 26 C -0.064 4.064 27 C -0.137 4.137 28 C 0.157 3.843 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.396 0.604 38 H 0.177 0.823 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.270 3.261 1.637 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.310 3.690 3 O -0.395 6.395 4 N -0.279 5.279 5 C -0.021 4.021 6 C -0.122 4.122 7 C -0.150 4.150 8 C -0.040 4.040 9 C -0.141 4.141 10 C 0.331 3.669 11 O -0.414 6.414 12 N -0.259 5.259 13 C -0.165 4.165 14 C -0.207 4.207 15 N -0.092 5.092 16 N 0.090 4.910 17 C -0.455 4.455 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.235 4.235 26 C -0.083 4.083 27 C -0.158 4.158 28 C 0.061 3.939 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.230 0.770 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.621 2.229 1.602 25.768 hybrid contribution -0.273 1.365 -0.023 1.392 sum -25.894 3.594 1.579 26.189 Atomic orbital electron populations 1.21911 0.90234 1.05292 1.05396 1.20890 0.90934 0.81857 0.75356 1.90723 1.70592 1.30588 1.47559 1.45951 1.05096 1.07672 1.69223 1.22217 0.96670 0.80248 1.03010 1.21095 0.89820 0.96926 1.04340 1.19867 0.94456 0.92948 1.07700 1.20417 0.89369 1.00185 0.94059 1.19888 0.93587 0.93610 1.07014 1.17870 0.84666 0.85523 0.78870 1.90665 1.81172 1.18696 1.50890 1.42408 1.04557 1.08700 1.70228 1.17262 0.81678 0.94120 1.23422 1.24133 0.92228 0.96623 1.07705 1.78250 1.11257 0.94166 1.25494 1.44537 1.04016 1.03558 1.38871 1.19823 0.79075 0.93699 1.52914 0.86669 1.25642 1.00853 0.95075 0.95562 1.70208 1.32198 1.01986 1.35263 0.85896 0.79991 0.78791 0.79465 1.19180 1.20144 1.19169 1.21261 0.86158 0.96266 1.19780 1.21120 0.95440 0.95435 0.96297 1.20813 0.91109 0.99526 1.04303 1.18518 0.83213 0.94558 0.97562 0.88259 0.88242 0.89851 0.89607 0.89582 0.88756 0.88744 0.84107 0.76985 0.80635 0.91423 0.83673 0.84936 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.93 36.01 0.36 -0.33 16 2 C 0.52 4.73 7.89 -10.98 -0.09 4.65 16 3 O -0.52 -6.85 15.24 5.56 0.08 -6.76 16 4 N -0.56 -4.93 3.12 -112.87 -0.35 -5.28 16 5 C 0.10 0.48 6.35 -3.65 -0.02 0.46 16 6 C -0.08 -0.53 6.94 -27.22 -0.19 -0.71 16 7 C -0.15 -1.56 6.21 -104.30 -0.65 -2.21 16 8 C -0.02 -0.27 9.59 -39.22 -0.38 -0.65 16 9 C -0.14 -2.00 5.88 -104.97 -0.62 -2.62 16 10 C 0.54 10.15 7.74 -12.45 -0.10 10.05 16 11 O -0.54 -11.83 13.50 5.27 0.07 -11.76 16 12 N -0.62 -11.56 5.42 -10.93 -0.06 -11.62 16 13 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 14 C -0.03 -0.84 10.85 -17.03 -0.18 -1.03 16 15 N -0.26 -7.71 10.39 30.80 0.32 -7.39 16 16 N -0.14 -3.97 3.74 -11.41 -0.04 -4.01 16 17 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 18 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.76 11.81 55.50 0.66 -21.11 16 21 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 26 C -0.06 -0.80 9.52 -39.32 -0.37 -1.17 16 27 C -0.14 -1.71 9.43 -39.26 -0.37 -2.08 16 28 C 0.16 1.81 6.62 -83.55 -0.55 1.25 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.15 6.88 -51.93 -0.36 -0.21 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.22 7.66 -51.93 -0.40 -0.18 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.14 1.81 7.65 -52.49 -0.40 1.41 16 37 H 0.40 5.84 6.86 -40.82 -0.28 5.56 16 38 H 0.18 4.67 5.91 -52.49 -0.31 4.36 16 39 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 41 H 0.13 1.39 6.41 -52.49 -0.34 1.05 16 42 H 0.14 1.83 6.25 -52.48 -0.33 1.51 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -37.27 357.69 -7.62 -44.90 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.49 Total: 9.80 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.18 Total: -6.27 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.52 Total: -49.40 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.16 Total: -18.52 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.27 -7.62 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139584937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.867 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds