Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00224 * 2 1 4 4 C 1.50699 * 109.47263 * 275.00073 * 3 2 1 5 5 H 1.07999 * 119.99878 * 0.27467 * 4 3 2 6 6 C 1.37876 * 119.99937 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00403 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99774 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47024 * 59.99973 * 8 6 4 10 10 H 1.48500 * 109.47212 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47231 * 300.00101 * 8 6 4 12 12 S 1.65597 * 119.99765 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40090 * 23.54514 * 12 2 1 14 14 O 1.42102 * 106.40341 * 156.46118 * 12 2 1 15 15 N 1.65597 * 107.22351 * 270.00298 * 12 2 1 16 16 C 1.46507 * 119.99944 * 64.99515 * 15 12 2 17 17 H 1.09002 * 109.59390 * 3.14709 * 16 15 12 18 18 C 1.52849 * 109.59781 * 242.67604 * 16 15 12 19 19 C 1.52125 * 110.84779 * 323.73343 * 18 16 15 20 20 C 1.51433 * 113.45835 * 292.29178 * 19 18 16 21 21 O 1.43183 * 110.87722 * 65.27294 * 20 19 18 22 22 C 1.36068 * 115.60650 * 273.40803 * 21 20 19 23 23 C 1.38945 * 119.75657 * 251.45316 * 22 21 20 24 24 C 1.38150 * 119.70177 * 178.50694 * 23 22 21 25 25 C 1.38288 * 120.26808 * 0.02562 * 24 23 22 26 26 C 1.38405 * 120.03659 * 0.48645 * 25 24 23 27 27 C 1.37975 * 120.51251 * 70.78094 * 22 21 20 28 28 H 1.08998 * 109.46919 * 89.99932 * 1 2 3 29 29 H 1.08997 * 109.47401 * 210.00303 * 1 2 3 30 30 H 1.09000 * 109.46665 * 330.00334 * 1 2 3 31 31 H 1.09001 * 109.46944 * 154.99663 * 3 2 1 32 32 H 1.09003 * 109.47231 * 35.00111 * 3 2 1 33 33 H 0.96994 * 120.00595 * 180.02562 * 7 6 4 34 34 H 0.96993 * 120.00349 * 245.00271 * 15 12 2 35 35 H 1.09008 * 109.20184 * 84.08607 * 18 16 15 36 36 H 1.08996 * 109.20448 * 203.38288 * 18 16 15 37 37 H 1.09000 * 108.68945 * 171.25720 * 19 18 16 38 38 H 1.09002 * 108.58193 * 53.24399 * 19 18 16 39 39 H 1.08998 * 109.19597 * 304.91578 * 20 19 18 40 40 H 1.08997 * 109.19655 * 185.63545 * 20 19 18 41 41 H 1.07992 * 120.14323 * 358.52865 * 23 22 21 42 42 H 1.08002 * 119.86245 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.98304 * 180.42993 * 25 24 23 44 44 H 1.07991 * 120.19164 * 179.87296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9248 1.1959 -2.2327 6 6 3.0008 2.9503 -1.6664 7 7 3.5036 3.6468 -0.6706 8 14 3.1798 3.5659 -3.4209 9 1 1.8336 3.7721 -4.0130 10 1 3.9223 4.8520 -3.4210 11 1 3.9253 2.5635 -4.2236 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4067 -0.5435 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8581 1.5825 16 6 1.3945 -2.1769 2.4411 17 1 0.4756 -2.1362 1.8561 18 6 1.3198 -1.1712 3.5898 19 6 2.7132 -0.7799 4.0582 20 6 3.4640 -1.9116 4.7280 21 8 3.7342 -2.9659 3.7976 22 6 2.7481 -3.8928 3.6565 23 6 2.9264 -5.1726 4.1672 24 6 1.9124 -6.1036 4.0507 25 6 0.7244 -5.7661 3.4284 26 6 0.5506 -4.4945 2.9102 27 6 1.5667 -3.5677 3.0222 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.1858 1.1176 0.4344 32 1 1.6502 2.0043 0.5895 33 1 3.9670 4.4804 -0.8471 34 1 3.4386 -1.8954 1.9408 35 1 0.7915 -0.2796 3.2519 36 1 0.7740 -1.6168 4.4214 37 1 2.6253 0.0466 4.7634 38 1 3.2876 -0.4422 3.1955 39 1 2.8637 -2.3034 5.5491 40 1 4.4062 -1.5322 5.1233 41 1 3.8534 -5.4381 4.6534 42 1 2.0481 -7.0990 4.4471 43 1 -0.0679 -6.4954 3.3460 44 1 -0.3753 -4.2289 2.4220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155412480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -82.040182 kcal Electronic energy + Delta-G solvation = -29174.321700 eV Core-core repulsion = 25218.888594 eV Total energy + Delta-G solvation = -3955.433106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84129 -37.64647 -36.68799 -36.23201 -35.45251 -35.09318 -32.56852 -32.42051 -31.13416 -30.19834 -27.80275 -27.29799 -25.09167 -24.81730 -22.87370 -22.27898 -21.39175 -20.54534 -19.01233 -18.01203 -17.42061 -16.72977 -16.50174 -16.27239 -15.98061 -15.40495 -15.35984 -14.95459 -14.93295 -14.30722 -13.96800 -13.85062 -13.49062 -13.39326 -13.24555 -12.93779 -12.56718 -12.45870 -12.25754 -12.08992 -11.72375 -11.60641 -11.51612 -11.35377 -11.27857 -11.16290 -11.05723 -10.79149 -10.75880 -10.67257 -10.48320 -10.08945 -10.00434 -9.77409 -9.34088 -9.01347 -8.65307 -8.42330 -8.05360 -6.04869 -4.08436 1.04456 1.13687 1.34690 3.29517 3.35215 3.38510 3.43568 3.54303 3.81489 4.24104 4.43516 4.46985 4.59208 4.74500 4.80243 4.83287 4.94518 5.03106 5.09420 5.19799 5.24176 5.29996 5.39360 5.42715 5.46464 5.55634 5.68323 5.78160 5.82606 5.97889 6.02010 6.03281 6.17775 6.22840 6.29760 6.32041 6.47420 6.53429 6.58631 7.16195 7.30875 7.37448 7.44965 7.63768 7.92695 8.22498 8.93460 9.56625 11.03700 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.003640 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.375205 B = 7690.322326 C = 8160.081778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.260 3.740 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.779 3.221 13 O -0.998 6.998 14 O -0.963 6.963 15 N -1.121 6.121 16 C 0.201 3.799 17 H 0.097 0.903 18 C -0.128 4.128 19 C -0.158 4.158 20 C 0.066 3.934 21 O -0.327 6.327 22 C 0.111 3.889 23 C -0.136 4.136 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.091 4.091 27 C -0.119 4.119 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.419 0.581 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -14.344 15.666 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.840 5.840 3 C 0.138 3.862 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.786 3.214 13 O -0.981 6.981 14 O -0.947 6.947 15 N -0.881 5.881 16 C 0.092 3.908 17 H 0.115 0.885 18 C -0.167 4.167 19 C -0.195 4.195 20 C -0.008 4.008 21 O -0.244 6.244 22 C 0.067 3.933 23 C -0.155 4.155 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.110 4.110 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.256 0.744 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.724 -14.613 14.768 21.550 hybrid contribution 0.238 0.693 -0.415 0.842 sum -5.486 -13.920 14.353 20.733 Atomic orbital electron populations 1.21241 0.80279 1.00854 1.01568 1.57662 1.14085 1.23440 1.88807 1.19036 0.90993 0.78590 0.97591 1.21465 1.35958 1.06393 0.93046 0.92277 1.24915 0.95108 0.96489 0.97448 1.69897 1.37374 1.15341 1.30961 0.86586 0.78290 0.77984 0.84772 1.20196 1.21179 1.19978 1.02040 0.73454 0.72917 0.72945 1.93535 1.67659 1.60069 1.76830 1.93642 1.40618 1.84831 1.75588 1.56453 1.14811 1.85103 1.31764 1.19698 0.89391 0.89822 0.91886 0.88465 1.21751 0.97632 0.99626 0.97732 1.21670 0.96732 0.98566 1.02577 1.22598 1.01149 0.86777 0.90280 1.86268 1.39103 1.36535 1.62504 1.18425 0.88155 0.89608 0.97109 1.21296 0.99930 0.93368 1.00879 1.21021 0.93242 0.99109 0.99239 1.21189 0.97865 0.96479 0.99169 1.20991 0.98579 0.92821 0.98628 1.20570 0.94517 0.97281 0.99742 0.93079 0.93285 0.91411 0.94473 0.94755 0.92673 0.74355 0.90000 0.91175 0.90218 0.89741 0.92599 0.88253 0.85346 0.85720 0.85691 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.79 10.33 59.85 0.62 2.41 16 2 N -1.00 -20.45 3.23 -123.05 -0.40 -20.85 16 3 C 0.26 6.44 5.12 -5.20 -0.03 6.42 16 4 C -0.53 -14.97 9.38 -34.44 -0.32 -15.29 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 S 2.78 56.88 5.94 -107.50 -0.64 56.24 16 13 O -1.00 -21.38 16.74 -57.17 -0.96 -22.34 16 14 O -0.96 -23.99 17.11 -57.17 -0.98 -24.97 16 15 N -1.12 -17.95 4.43 -5.51 -0.02 -17.98 16 16 C 0.20 2.61 2.99 -68.65 -0.21 2.41 16 17 H 0.10 1.21 5.97 -51.93 -0.31 0.90 16 18 C -0.13 -1.38 5.54 -27.25 -0.15 -1.53 16 19 C -0.16 -1.69 5.26 -27.97 -0.15 -1.84 16 20 C 0.07 0.66 6.49 36.37 0.24 0.89 16 21 O -0.33 -4.13 8.26 -19.96 -0.16 -4.30 16 22 C 0.11 1.38 5.46 -39.42 -0.22 1.17 16 23 C -0.14 -1.46 10.00 -39.35 -0.39 -1.85 16 24 C -0.11 -1.00 10.03 -39.60 -0.40 -1.40 16 25 C -0.13 -1.22 10.05 -39.50 -0.40 -1.62 16 26 C -0.09 -1.01 9.70 -39.62 -0.38 -1.39 16 27 C -0.12 -1.49 4.81 -104.31 -0.50 -1.99 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.67 6.34 -51.93 -0.33 0.34 16 30 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 31 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 32 H 0.03 0.85 7.96 -51.93 -0.41 0.44 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.42 6.62 5.70 -34.47 -0.20 6.42 16 35 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.10 6.47 -51.93 -0.34 0.76 16 39 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 1.22 7.99 -52.49 -0.42 0.80 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -35.01 365.10 -10.46 -45.47 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.14 Total: 3.53 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.39 Total: -11.94 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.32 Total: -64.20 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -2.10 Total: -51.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.64 Total: 56.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.01 -10.46 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155412480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.568 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds