Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99869 * 2 1 4 4 O 1.21287 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00204 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47245 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46849 * 179.97438 * 6 5 3 8 8 N 1.46509 * 109.46901 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99585 * 85.00441 * 8 7 6 10 10 S 1.65600 * 120.00143 * 265.00300 * 8 7 6 11 11 O 1.42102 * 106.40013 * 23.54038 * 10 8 7 12 12 O 1.42091 * 106.40079 * 156.45889 * 10 8 7 13 13 C 1.76195 * 107.21893 * 270.00198 * 10 8 7 14 14 C 1.38632 * 119.74969 * 269.72768 * 13 10 8 15 15 C 1.37624 * 120.25039 * 179.71859 * 14 13 10 16 16 C 1.40712 * 119.74058 * 0.57276 * 15 14 13 17 17 C 1.41403 * 120.23959 * 179.68136 * 16 15 14 18 18 H 1.08002 * 119.99665 * 204.40656 * 17 16 15 19 19 C 1.39938 * 120.00070 * 24.40302 * 17 16 15 20 20 N 1.30822 * 120.00057 * 17.85127 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 197.84608 * 19 17 16 22 22 H 1.48505 * 109.47144 * 60.00587 * 21 19 17 23 23 H 1.48502 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47298 * 300.00143 * 21 19 17 25 25 C 1.40711 * 119.51483 * 359.69955 * 16 15 14 26 26 C 1.37622 * 119.74389 * 0.02562 * 25 16 15 27 27 H 1.08996 * 109.47147 * 59.99815 * 1 2 3 28 28 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47455 * 299.99871 * 1 2 3 30 30 H 0.96994 * 120.00436 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46931 * 60.00219 * 5 3 2 32 32 H 1.09000 * 109.47586 * 300.00510 * 5 3 2 33 33 H 1.09001 * 109.46761 * 60.00813 * 6 5 3 34 34 H 1.08996 * 109.47267 * 300.00157 * 6 5 3 35 35 H 1.09006 * 109.47164 * 60.00774 * 7 6 5 36 36 H 1.09000 * 109.47859 * 300.00278 * 7 6 5 37 37 H 1.09000 * 109.46758 * 269.99376 * 9 8 7 38 38 H 1.08992 * 109.47428 * 30.00068 * 9 8 7 39 39 H 1.08999 * 109.46635 * 150.00171 * 9 8 7 40 40 H 1.08003 * 119.87378 * 359.97438 * 14 13 10 41 41 H 1.08003 * 120.12599 * 180.27350 * 15 14 13 42 42 H 0.97005 * 119.99724 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.12784 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.87386 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6099 0.0011 7 6 5.6858 2.6098 0.0023 8 7 6.1741 3.9911 0.0035 9 6 6.3130 4.7178 1.2679 10 16 6.5690 4.7309 -1.4245 11 8 5.8444 4.0528 -2.4415 12 8 6.4623 6.1291 -1.1949 13 6 8.2740 4.4050 -1.7267 14 6 9.2369 5.2806 -1.2493 15 6 10.5718 5.0330 -1.4744 16 6 10.9571 3.8923 -2.2026 17 6 12.3254 3.6313 -2.4458 18 1 12.6177 3.0270 -3.2919 19 6 13.3007 4.1560 -1.5904 20 7 12.9661 4.5793 -0.3986 21 14 15.0802 4.2518 -2.1503 22 1 15.1722 5.1028 -3.3639 23 1 15.9086 4.8414 -1.0679 24 1 15.5747 2.8872 -2.4638 25 6 9.9708 3.0135 -2.6873 26 6 8.6421 3.2781 -2.4453 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9501 -0.8400 -0.0004 31 1 4.0095 0.6533 -0.8892 32 1 4.0089 0.6537 0.8907 33 1 3.7922 3.1234 0.8912 34 1 3.7928 3.1239 -0.8888 35 1 6.0499 2.0962 -0.8875 36 1 6.0485 2.0959 0.8925 37 1 5.3823 5.2394 1.4913 38 1 6.5363 4.0135 2.0692 39 1 7.1238 5.4414 1.1838 40 1 8.9385 6.1583 -0.6950 41 1 11.3205 5.7142 -1.0977 42 1 13.6423 4.9427 0.1944 43 1 10.2554 2.1353 -3.2477 44 1 7.8833 2.6052 -2.8167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159434287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -106.837873 kcal Electronic energy + Delta-G solvation = -27031.797084 eV Core-core repulsion = 23075.288670 eV Total energy + Delta-G solvation = -3956.508415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.82874 -37.57477 -36.72693 -36.42401 -35.07028 -34.80396 -34.04606 -32.94552 -30.25792 -29.47656 -28.51543 -26.56889 -25.82090 -24.60430 -21.83409 -21.46766 -21.13169 -20.50812 -18.43249 -17.63778 -17.45824 -17.02324 -16.59114 -16.09734 -15.95353 -15.60689 -15.44570 -14.43882 -14.24248 -14.18337 -14.00033 -13.57035 -13.33142 -13.19755 -13.09537 -12.64017 -12.48299 -12.37484 -12.28856 -12.16072 -11.84534 -11.78883 -11.64874 -11.42647 -11.29410 -11.24364 -11.22647 -11.03180 -10.90125 -10.58244 -10.42507 -10.04728 -9.75954 -9.60585 -9.50725 -9.39066 -8.66846 -7.95873 -7.70891 -7.15210 -4.80725 1.23532 2.25814 2.49442 2.87007 2.88564 2.91262 2.94354 2.99591 3.64506 3.65823 4.24009 4.52462 4.59936 4.83852 4.89965 4.93769 5.10195 5.11923 5.21520 5.38873 5.42337 5.50399 5.51640 5.54826 5.68201 5.78620 5.98484 6.01718 6.05322 6.11160 6.12041 6.35309 6.39772 6.66632 6.68329 6.83328 7.01452 7.05394 7.21722 7.33288 7.41803 7.63124 7.76211 7.96041 8.03940 8.31160 8.50507 8.64530 9.76237 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002392 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.695906 B =11705.149155 C =12157.477658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.511 3.489 4 O -0.536 6.536 5 C -0.138 4.138 6 C -0.127 4.127 7 C 0.129 3.871 8 N -1.007 6.007 9 C 0.099 3.901 10 S 2.691 3.309 11 O -0.981 6.981 12 O -0.981 6.981 13 C -0.787 4.787 14 C -0.016 4.016 15 C -0.183 4.183 16 C 0.139 3.861 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.766 5.766 21 Si 0.918 3.082 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.239 4.239 26 C 0.001 3.999 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.402 0.598 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.811 -9.572 5.339 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.298 3.702 4 O -0.412 6.412 5 C -0.179 4.179 6 C -0.167 4.167 7 C 0.003 3.997 8 N -0.842 5.842 9 C -0.047 4.047 10 S 2.790 3.210 11 O -0.971 6.971 12 O -0.972 6.972 13 C -0.883 4.883 14 C -0.036 4.036 15 C -0.203 4.203 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.389 5.389 21 Si 0.741 3.259 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.260 4.260 26 C -0.019 4.019 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.235 0.765 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.800 -8.200 5.113 16.038 hybrid contribution 1.707 -0.798 0.107 1.888 sum -11.093 -8.998 5.220 15.208 Atomic orbital electron populations 1.21513 0.79903 1.02012 1.02318 1.45867 1.07723 1.08917 1.76910 1.20883 0.90633 0.83414 0.75277 1.90724 1.70615 1.31324 1.48528 1.21620 0.91242 1.00342 1.04715 1.21838 0.95732 0.94652 1.04450 1.21192 0.92989 0.82314 1.03228 1.57652 1.80512 1.23118 1.22887 1.21372 1.01506 0.96327 0.85477 1.01454 0.74932 0.72755 0.71855 1.93473 1.72354 1.75731 1.55565 1.93476 1.87773 1.30662 1.85268 1.29272 1.20819 1.11412 1.26808 1.20262 0.93283 0.95191 0.94914 1.21339 0.94156 0.99058 1.05748 1.17851 0.92792 0.88990 0.86859 1.19906 0.90729 1.26115 1.09533 0.89472 1.26134 1.02700 0.92364 0.93807 1.69810 1.37350 1.26422 1.05286 0.86194 0.79883 0.80076 0.79775 1.18340 1.19908 1.18570 1.21046 0.92588 1.01426 1.10896 1.20154 0.95987 0.93039 0.92742 0.92279 0.90807 0.92357 0.76451 0.88286 0.88648 0.90888 0.90260 0.89992 0.90628 0.93039 0.91454 0.90983 0.87951 0.85964 0.89937 0.88197 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.74 -5.60 5.71 -67.08 -0.38 -5.98 16 3 C 0.51 5.71 7.83 -10.99 -0.09 5.62 16 4 O -0.54 -8.48 15.98 5.55 0.09 -8.39 16 5 C -0.14 -1.26 5.70 -27.89 -0.16 -1.42 16 6 C -0.13 -1.61 4.83 -26.73 -0.13 -1.74 16 7 C 0.13 1.67 5.37 -4.04 -0.02 1.65 16 8 N -1.01 -15.96 3.18 -121.75 -0.39 -16.35 16 9 C 0.10 1.35 10.33 59.85 0.62 1.97 16 10 S 2.69 53.73 5.60 -107.50 -0.60 53.13 16 11 O -0.98 -20.88 16.23 -57.17 -0.93 -21.81 16 12 O -0.98 -21.75 16.32 -57.17 -0.93 -22.68 16 13 C -0.79 -17.49 6.00 -39.29 -0.24 -17.73 16 14 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 15 C -0.18 -4.57 8.70 -38.87 -0.34 -4.91 16 16 C 0.14 3.50 5.58 -106.82 -0.60 2.91 16 17 C -0.44 -10.61 9.05 -37.74 -0.34 -10.95 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.65 5.14 -17.35 -0.09 1.56 16 20 N -0.77 -18.03 10.95 55.55 0.61 -17.42 16 21 Si 0.92 16.90 29.59 -169.99 -5.03 11.87 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 26 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 1.69 8.83 -40.82 -0.36 1.33 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 36 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 39 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 40 H 0.10 2.22 7.59 -52.48 -0.40 1.82 16 41 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 42 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -33.28 383.69 -10.11 -43.39 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.46 Total: 7.38 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -1.87 Total: -28.91 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.16 Total: -39.76 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -1.77 Total: -52.88 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.60 Total: 53.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.28 -10.11 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159434287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.450 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds