Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99869 * 2 1 4 4 O 1.21287 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00204 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47245 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46849 * 179.97438 * 6 5 3 8 8 N 1.46509 * 109.46901 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99585 * 85.00441 * 8 7 6 10 10 S 1.65600 * 120.00143 * 265.00300 * 8 7 6 11 11 O 1.42102 * 106.40013 * 23.54038 * 10 8 7 12 12 O 1.42091 * 106.40079 * 156.45889 * 10 8 7 13 13 C 1.76195 * 107.21893 * 270.00198 * 10 8 7 14 14 C 1.38632 * 119.74969 * 269.72768 * 13 10 8 15 15 C 1.37624 * 120.25039 * 179.71859 * 14 13 10 16 16 C 1.40712 * 119.74058 * 0.57276 * 15 14 13 17 17 C 1.41403 * 120.23959 * 179.68136 * 16 15 14 18 18 H 1.08002 * 119.99665 * 204.40656 * 17 16 15 19 19 C 1.39938 * 120.00070 * 24.40302 * 17 16 15 20 20 N 1.30822 * 120.00057 * 17.85127 * 19 17 16 21 21 Si 1.86802 * 119.99830 * 197.84608 * 19 17 16 22 22 H 1.48505 * 109.47144 * 60.00587 * 21 19 17 23 23 H 1.48502 * 109.46950 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47298 * 300.00143 * 21 19 17 25 25 C 1.40711 * 119.51483 * 359.69955 * 16 15 14 26 26 C 1.37622 * 119.74389 * 0.02562 * 25 16 15 27 27 H 1.08996 * 109.47147 * 59.99815 * 1 2 3 28 28 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47455 * 299.99871 * 1 2 3 30 30 H 0.96994 * 120.00436 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46931 * 60.00219 * 5 3 2 32 32 H 1.09000 * 109.47586 * 300.00510 * 5 3 2 33 33 H 1.09001 * 109.46761 * 60.00813 * 6 5 3 34 34 H 1.08996 * 109.47267 * 300.00157 * 6 5 3 35 35 H 1.09006 * 109.47164 * 60.00774 * 7 6 5 36 36 H 1.09000 * 109.47859 * 300.00278 * 7 6 5 37 37 H 1.09000 * 109.46758 * 269.99376 * 9 8 7 38 38 H 1.08992 * 109.47428 * 30.00068 * 9 8 7 39 39 H 1.08999 * 109.46635 * 150.00171 * 9 8 7 40 40 H 1.08003 * 119.87378 * 359.97438 * 14 13 10 41 41 H 1.08003 * 120.12599 * 180.27350 * 15 14 13 42 42 H 0.97005 * 119.99724 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.12784 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.87386 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6099 0.0011 7 6 5.6858 2.6098 0.0023 8 7 6.1741 3.9911 0.0035 9 6 6.3130 4.7178 1.2679 10 16 6.5690 4.7309 -1.4245 11 8 5.8444 4.0528 -2.4415 12 8 6.4623 6.1291 -1.1949 13 6 8.2740 4.4050 -1.7267 14 6 9.2369 5.2806 -1.2493 15 6 10.5718 5.0330 -1.4744 16 6 10.9571 3.8923 -2.2026 17 6 12.3254 3.6313 -2.4458 18 1 12.6177 3.0270 -3.2919 19 6 13.3007 4.1560 -1.5904 20 7 12.9661 4.5793 -0.3986 21 14 15.0802 4.2518 -2.1503 22 1 15.1722 5.1028 -3.3639 23 1 15.9086 4.8414 -1.0679 24 1 15.5747 2.8872 -2.4638 25 6 9.9708 3.0135 -2.6873 26 6 8.6421 3.2781 -2.4453 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9501 -0.8400 -0.0004 31 1 4.0095 0.6533 -0.8892 32 1 4.0089 0.6537 0.8907 33 1 3.7922 3.1234 0.8912 34 1 3.7928 3.1239 -0.8888 35 1 6.0499 2.0962 -0.8875 36 1 6.0485 2.0959 0.8925 37 1 5.3823 5.2394 1.4913 38 1 6.5363 4.0135 2.0692 39 1 7.1238 5.4414 1.1838 40 1 8.9385 6.1583 -0.6950 41 1 11.3205 5.7142 -1.0977 42 1 13.6423 4.9427 0.1944 43 1 10.2554 2.1353 -3.2477 44 1 7.8833 2.6052 -2.8167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159434287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -130.599885 kcal Electronic energy + Delta-G solvation = -27032.827483 eV Core-core repulsion = 23075.288670 eV Total energy + Delta-G solvation = -3957.538813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67563 -39.37313 -38.22673 -37.72970 -36.75632 -35.79817 -35.57459 -33.92272 -32.05774 -31.29030 -29.38219 -27.62529 -27.41422 -25.61194 -23.27823 -22.94870 -22.78358 -21.30409 -19.89659 -19.42121 -18.69450 -18.23903 -18.07480 -17.21199 -17.06747 -16.76529 -16.70424 -15.84739 -15.69221 -15.25648 -15.18406 -15.08562 -14.84932 -14.44218 -14.08503 -14.03529 -13.96604 -13.64474 -13.54572 -13.34360 -13.13318 -13.07343 -12.98262 -12.90171 -12.88367 -12.64790 -12.57931 -12.53220 -12.27077 -12.00121 -11.61447 -11.52073 -11.30935 -11.21329 -10.95503 -10.10145 -9.95483 -9.75850 -9.54671 -8.86698 -6.63968 -0.33569 0.49050 1.06297 1.36351 1.45034 1.50417 1.67610 2.11455 2.16715 2.37949 2.54521 2.96793 3.51287 3.52960 3.82570 3.86721 4.06396 4.22330 4.29991 4.32819 4.42960 4.54776 4.59874 4.63023 4.72695 4.73690 4.82488 4.87160 4.93644 4.95883 4.97537 4.98620 5.10569 5.24654 5.29102 5.36170 5.50169 5.52824 5.59750 5.71868 5.81539 5.94411 6.15613 6.49422 6.60115 6.68670 6.81655 7.32089 8.08160 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002392 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.695906 B =11705.149155 C =12157.477658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.503 3.497 4 O -0.594 6.594 5 C -0.132 4.132 6 C -0.124 4.124 7 C 0.120 3.880 8 N -1.003 6.003 9 C 0.089 3.911 10 S 2.713 3.287 11 O -0.995 6.995 12 O -1.007 7.007 13 C -0.796 4.796 14 C -0.022 4.022 15 C -0.207 4.207 16 C 0.110 3.890 17 C -0.464 4.464 18 H 0.093 0.907 19 C 0.034 3.966 20 N -0.795 5.795 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.253 1.253 25 C -0.255 4.255 26 C 0.000 4.000 27 H 0.042 0.958 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.421 0.579 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.299 0.701 43 H 0.114 0.886 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -11.877 6.198 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.291 3.709 4 O -0.475 6.475 5 C -0.172 4.172 6 C -0.164 4.164 7 C -0.004 4.004 8 N -0.840 5.840 9 C -0.056 4.056 10 S 2.810 3.190 11 O -0.985 6.985 12 O -0.997 6.997 13 C -0.890 4.890 14 C -0.042 4.042 15 C -0.228 4.228 16 C 0.106 3.894 17 C -0.491 4.491 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.417 5.417 21 Si 0.810 3.190 22 H -0.184 1.184 23 H -0.188 1.188 24 H -0.177 1.177 25 C -0.276 4.276 26 C -0.020 4.020 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.258 0.742 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.586 -10.567 5.963 17.482 hybrid contribution 1.477 -0.127 -0.089 1.485 sum -11.109 -10.695 5.875 16.501 Atomic orbital electron populations 1.21636 0.79402 1.04108 1.01052 1.45782 1.08198 1.08855 1.74963 1.21319 0.91605 0.83440 0.74539 1.90704 1.71779 1.33466 1.51516 1.21631 0.89717 0.98389 1.07471 1.21742 0.95451 0.96790 1.02427 1.21534 0.93091 0.80692 1.05119 1.57351 1.79990 1.24555 1.22153 1.21632 1.01713 0.97074 0.85188 1.00723 0.73698 0.72131 0.72438 1.93446 1.72061 1.75862 1.57163 1.93436 1.87716 1.32662 1.85912 1.29696 1.22150 1.10898 1.26220 1.20436 0.93119 0.95781 0.94907 1.21352 0.94667 0.99524 1.07220 1.18215 0.93964 0.89565 0.87648 1.20203 0.91134 1.27413 1.10371 0.88928 1.27005 1.06776 0.91351 0.93423 1.69842 1.39134 1.26531 1.06243 0.85106 0.74353 0.80305 0.79249 1.18442 1.18831 1.17672 1.21291 0.93007 1.01866 1.11391 1.20458 0.96163 0.93311 0.92077 0.93876 0.86984 0.93398 0.74180 0.86404 0.84776 0.91364 0.94009 0.89945 0.86807 0.92112 0.88045 0.92136 0.87104 0.87154 0.89028 0.86759 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.73 -9.29 5.71 -484.52 -2.77 -12.06 16 3 C 0.50 10.53 7.83 87.65 0.69 11.21 16 4 O -0.59 -19.01 15.98 -3.05 -0.05 -19.06 16 5 C -0.13 -2.03 5.70 29.85 0.17 -1.86 16 6 C -0.12 -2.96 4.83 30.59 0.15 -2.81 16 7 C 0.12 2.81 5.37 86.38 0.46 3.27 16 8 N -1.00 -30.30 3.18 -539.11 -1.72 -32.01 16 9 C 0.09 2.27 10.33 127.77 1.32 3.59 16 10 S 2.71 107.42 5.60 -56.49 -0.32 107.10 16 11 O -0.99 -41.93 16.23 -128.00 -2.08 -44.01 16 12 O -1.01 -44.90 16.32 -128.00 -2.09 -46.99 16 13 C -0.80 -35.37 6.00 22.46 0.13 -35.24 16 14 C -0.02 -1.07 9.49 22.22 0.21 -0.86 16 15 C -0.21 -10.71 8.70 22.73 0.20 -10.51 16 16 C 0.11 5.66 5.58 -21.29 -0.12 5.54 16 17 C -0.46 -22.97 9.05 23.46 0.21 -22.76 16 18 H 0.09 4.30 7.91 -2.91 -0.02 4.27 16 19 C 0.03 1.56 5.14 85.25 0.44 2.00 16 20 N -0.79 -37.85 10.95 21.82 0.24 -37.61 16 21 Si 0.99 34.16 29.59 68.60 2.03 36.19 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 23 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 24 H -0.25 -8.32 7.11 99.48 0.71 -7.62 16 25 C -0.26 -12.02 9.80 22.73 0.22 -11.80 16 26 C 0.00 -0.01 9.49 22.22 0.21 0.20 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.42 2.09 8.83 -92.71 -0.82 1.27 16 31 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.08 1.94 7.61 -2.38 -0.02 1.92 16 36 H 0.11 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.90 7.94 -2.39 -0.02 1.88 16 39 H 0.06 1.69 7.79 -2.39 -0.02 1.67 16 40 H 0.11 4.94 7.59 -2.91 -0.02 4.92 16 41 H 0.11 5.82 6.16 -2.91 -0.02 5.81 16 42 H 0.30 12.65 8.30 -92.70 -0.77 11.88 16 43 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 44 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 Total: -1.00 -75.32 383.69 -0.89 -76.20 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.19 Total: 29.93 kcal Atomic # 6 Polarization: -63.34 SS G_CDS: 5.66 Total: -57.68 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -4.25 Total: -81.69 kcal Atomic # 8 Polarization: -105.84 SS G_CDS: -4.22 Total: -110.06 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Atomic # 16 Polarization: 107.42 SS G_CDS: -0.32 Total: 107.10 kcal Total: -75.32 -0.89 -76.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159434287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.396 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds