Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 H 1.07995 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00052 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00263 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46960 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47261 * 120.00377 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00817 * 8 6 4 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 N 1.65600 * 107.21815 * 89.99936 * 12 2 1 16 16 C 1.46491 * 120.00351 * 64.99848 * 15 12 2 17 17 C 1.52998 * 109.47459 * 164.99863 * 16 15 12 18 18 O 1.42900 * 110.27003 * 299.38365 * 17 16 15 19 19 C 1.54346 * 110.30581 * 177.20053 * 17 16 15 20 20 C 1.54348 * 102.39321 * 267.42795 * 19 17 16 21 21 C 1.51371 * 105.16698 * 333.65025 * 20 19 17 22 22 C 1.38493 * 130.38877 * 197.19346 * 21 20 19 23 23 C 1.38103 * 120.21640 * 180.02562 * 22 21 20 24 24 C 1.38251 * 119.93294 * 359.96855 * 23 22 21 25 25 C 1.38106 * 119.93554 * 0.02562 * 24 23 22 26 26 C 1.38215 * 109.76005 * 17.18625 * 21 20 19 27 27 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 29 29 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 30 30 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 31 31 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 32 32 H 0.97000 * 119.99965 * 179.97438 * 7 6 4 33 33 H 0.97008 * 119.99934 * 244.99723 * 15 12 2 34 34 H 1.09003 * 109.47271 * 285.00488 * 16 15 12 35 35 H 1.09002 * 109.47148 * 44.99843 * 16 15 12 36 36 H 0.96699 * 114.00050 * 59.29547 * 18 17 16 37 37 H 1.09001 * 110.82177 * 25.64957 * 19 17 16 38 38 H 1.09001 * 110.82619 * 149.19626 * 19 17 16 39 39 H 1.09003 * 110.30076 * 214.73224 * 20 19 17 40 40 H 1.08998 * 110.38802 * 92.61653 * 20 19 17 41 41 H 1.08010 * 119.89550 * 359.97202 * 22 21 20 42 42 H 1.08004 * 120.03187 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.03072 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.89255 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5035 3.6468 0.6707 8 14 3.1798 3.5659 3.4209 9 1 2.5322 2.6060 4.3508 10 1 4.6208 3.6861 3.7587 11 1 2.5290 4.8946 3.5482 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 7 2.5381 -1.8580 -1.5826 16 6 3.3861 -1.0270 -2.4407 17 6 3.7520 -1.8069 -3.7051 18 8 4.4729 -2.9927 -3.3642 19 6 4.5881 -0.9241 -4.6558 20 6 3.5080 -0.3033 -5.5671 21 6 2.3632 -1.2936 -5.5555 22 6 1.2843 -1.4280 -6.4133 23 6 0.3485 -2.4216 -6.2027 24 6 0.4887 -3.2857 -5.1326 25 6 1.5640 -3.1533 -4.2762 26 6 2.5035 -2.1575 -4.4857 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 3.1859 1.1177 -0.4343 31 1 1.6502 2.0043 -0.5894 32 1 3.9670 4.4805 0.8473 33 1 2.1200 -2.6566 -1.9412 34 1 2.8470 -0.1206 -2.7161 35 1 4.2957 -0.7595 -1.9029 36 1 3.9865 -3.5960 -2.7857 37 1 5.1178 -0.1501 -4.1003 38 1 5.2834 -1.5303 -5.2365 39 1 3.8922 -0.1812 -6.5798 40 1 3.1813 0.6572 -5.1687 41 1 1.1738 -0.7531 -7.2493 42 1 -0.4920 -2.5235 -6.8732 43 1 -0.2420 -4.0636 -4.9666 44 1 1.6727 -3.8285 -3.4402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162237825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = -96.547232 kcal Electronic energy + Delta-G solvation = -28766.426069 eV Core-core repulsion = 24810.363890 eV Total energy + Delta-G solvation = -3956.062179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81187 -37.56254 -36.63171 -35.52132 -35.18531 -34.79961 -34.22907 -32.44965 -31.09218 -29.33452 -27.85014 -27.67548 -25.09310 -24.39159 -22.89336 -22.31274 -21.30928 -20.45203 -18.95992 -17.79691 -17.20735 -16.96143 -16.42555 -16.24869 -15.86965 -15.52954 -15.28815 -14.85642 -14.58599 -14.20298 -14.08039 -13.54619 -13.43973 -13.36499 -13.04205 -12.83054 -12.73868 -12.42692 -12.17321 -12.12196 -11.86246 -11.73609 -11.65914 -11.57628 -11.40661 -11.18423 -11.13269 -11.12550 -10.88259 -10.70577 -10.55833 -10.11179 -10.03560 -9.76944 -9.38789 -9.02151 -8.74913 -8.46137 -8.09404 -6.08503 -4.11927 1.11942 1.16209 1.22623 3.30349 3.38108 3.42789 3.47347 3.53516 3.99140 4.08938 4.15129 4.39063 4.43743 4.57862 4.76968 4.83099 4.85710 5.01335 5.09895 5.23830 5.25620 5.31098 5.40934 5.47901 5.54195 5.63572 5.67133 5.75231 5.81173 5.94212 5.97256 5.99995 6.04675 6.25544 6.30208 6.31476 6.41974 6.48778 6.78637 6.98463 7.18346 7.35673 7.46413 7.57624 7.89415 8.18241 8.90547 9.53509 11.00180 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.003745 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.445451 B = 7475.145499 C = 7900.871508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 S 2.782 3.218 13 O -0.960 6.960 14 O -0.997 6.997 15 N -1.136 6.136 16 C 0.103 3.897 17 C 0.169 3.831 18 O -0.545 6.545 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.084 4.084 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.100 4.100 26 C -0.120 4.120 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.263 0.737 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.375 0.625 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -10.674 -16.343 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.840 5.840 3 C 0.134 3.866 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.210 1.210 12 S 2.790 3.210 13 O -0.943 6.943 14 O -0.981 6.981 15 N -0.896 5.896 16 C -0.024 4.024 17 C 0.127 3.873 18 O -0.351 6.351 19 C -0.143 4.143 20 C -0.122 4.122 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.118 4.118 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.223 0.777 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.213 -10.528 -15.911 19.348 hybrid contribution -0.831 0.066 0.810 1.163 sum -4.044 -10.462 -15.101 18.811 Atomic orbital electron populations 1.21194 0.79933 1.01109 1.01447 1.57616 1.14336 1.23352 1.88655 1.19103 0.90920 0.78741 0.97838 1.21518 1.35928 1.06317 0.92944 0.92141 1.24917 0.95070 0.96481 0.97498 1.69917 1.37433 1.15317 1.30856 0.86460 0.78012 0.78487 0.84609 1.19652 1.20772 1.20969 1.01980 0.73692 0.72645 0.72720 1.93633 1.40525 1.84601 1.75560 1.93547 1.67143 1.60905 1.76550 1.56335 1.63305 1.37291 1.32654 1.21911 0.95682 0.93662 0.91157 1.20955 0.88018 0.85979 0.92331 1.86564 1.45385 1.32110 1.71005 1.22316 0.97299 0.98245 0.96399 1.21125 0.92450 0.97722 1.00902 1.20517 0.96221 0.96727 0.94974 1.20636 0.93920 0.98694 0.99325 1.21059 0.98875 0.95450 0.97974 1.21028 0.97788 0.99721 0.95277 1.20560 0.94118 0.97686 0.99478 1.21081 0.97107 0.96674 0.97184 0.93112 0.91506 0.93044 0.94474 0.94735 0.92746 0.76390 0.90396 0.88522 0.77694 0.88837 0.89283 0.90011 0.89131 0.86093 0.85855 0.85745 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.89 10.33 59.85 0.62 2.51 16 2 N -1.00 -20.40 3.23 -123.04 -0.40 -20.80 16 3 C 0.26 6.26 5.12 -5.19 -0.03 6.23 16 4 C -0.53 -14.72 9.38 -34.44 -0.32 -15.05 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 S 2.78 54.26 6.05 -107.50 -0.65 53.61 16 13 O -0.96 -22.66 16.58 -57.17 -0.95 -23.60 16 14 O -1.00 -20.51 17.21 -57.17 -0.98 -21.49 16 15 N -1.14 -16.52 5.54 -10.62 -0.06 -16.57 16 16 C 0.10 1.45 5.33 -4.05 -0.02 1.43 16 17 C 0.17 2.05 1.00 -90.74 -0.09 1.96 16 18 O -0.55 -6.79 13.05 -35.23 -0.46 -7.25 16 19 C -0.10 -1.10 6.32 -25.32 -0.16 -1.26 16 20 C -0.09 -0.80 6.76 -26.85 -0.18 -0.99 16 21 C -0.08 -0.91 6.14 -104.21 -0.64 -1.55 16 22 C -0.11 -1.05 10.04 -39.54 -0.40 -1.44 16 23 C -0.12 -1.05 10.05 -39.63 -0.40 -1.45 16 24 C -0.12 -1.14 10.05 -39.63 -0.40 -1.54 16 25 C -0.10 -1.05 8.94 -39.54 -0.35 -1.41 16 26 C -0.12 -1.38 4.85 -104.21 -0.51 -1.89 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 29 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 30 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 31 H 0.03 0.85 7.96 -51.93 -0.41 0.44 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.40 4.87 5.77 -34.47 -0.20 4.67 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.51 7.75 -51.93 -0.40 1.11 16 36 H 0.38 3.80 8.24 45.56 0.38 4.18 16 37 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.12 1.03 7.01 -52.49 -0.37 0.67 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -34.79 374.51 -10.67 -45.46 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.55 Total: 5.98 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.97 Total: -12.79 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.28 Total: -62.31 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.39 Total: -52.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 54.26 SS G_CDS: -0.65 Total: 53.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.79 -10.67 -45.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162237825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.089 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds