Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99635 * 2 1 4 4 C 1.50702 * 109.47444 * 274.99770 * 3 2 1 5 5 H 1.08000 * 119.99594 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00284 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00061 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99875 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47211 * 90.00215 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00018 * 8 6 4 11 11 H 1.48499 * 109.47287 * 329.99883 * 8 6 4 12 12 S 1.65600 * 119.99928 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.39860 * 156.45461 * 12 2 1 14 14 O 1.42102 * 106.40043 * 23.54283 * 12 2 1 15 15 N 1.65599 * 107.21735 * 269.99996 * 12 2 1 16 16 C 1.46499 * 120.00012 * 65.00259 * 15 12 2 17 17 C 1.53000 * 109.46840 * 165.00017 * 16 15 12 18 18 O 1.42894 * 110.27238 * 64.29994 * 17 16 15 19 19 C 1.54351 * 110.30016 * 186.37393 * 17 16 15 20 20 C 1.54340 * 102.39414 * 92.57581 * 19 17 16 21 21 C 1.51378 * 105.17052 * 26.34387 * 20 19 17 22 22 C 1.38494 * 130.39198 * 162.81334 * 21 20 19 23 23 C 1.38094 * 120.21723 * 179.97438 * 22 21 20 24 24 C 1.38260 * 119.93320 * 0.02562 * 23 22 21 25 25 C 1.38101 * 119.93250 * 359.97438 * 24 23 22 26 26 C 1.38300 * 120.28322 * 0.02656 * 25 24 23 27 27 H 1.09003 * 109.46891 * 270.00056 * 1 2 3 28 28 H 1.09001 * 109.47292 * 29.99884 * 1 2 3 29 29 H 1.09001 * 109.47185 * 149.99877 * 1 2 3 30 30 H 1.08999 * 109.47915 * 35.00316 * 3 2 1 31 31 H 1.09008 * 109.46823 * 155.00124 * 3 2 1 32 32 H 0.96995 * 120.00602 * 180.02562 * 7 6 4 33 33 H 0.97001 * 119.99797 * 244.99459 * 15 12 2 34 34 H 1.09002 * 109.47391 * 44.99686 * 16 15 12 35 35 H 1.09001 * 109.46813 * 284.99743 * 16 15 12 36 36 H 0.96700 * 113.99666 * 300.69781 * 18 17 16 37 37 H 1.09003 * 110.81893 * 210.79994 * 19 17 16 38 38 H 1.09004 * 110.82141 * 334.34783 * 19 17 16 39 39 H 1.08993 * 110.30656 * 145.26979 * 20 19 17 40 40 H 1.09005 * 110.30195 * 267.42632 * 20 19 17 41 41 H 1.08012 * 119.89337 * 0.02562 * 22 21 20 42 42 H 1.07998 * 120.03734 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02906 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.89051 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 3.0006 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5667 -3.4208 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3531 -3.5445 11 1 3.2265 2.4091 -4.3497 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4113 -2.4062 -0.5456 15 7 2.5381 -1.8594 1.5810 16 6 1.3946 -2.1789 2.4392 17 6 1.8876 -2.8866 3.7030 18 8 2.7108 -2.0083 4.4730 19 6 0.6898 -3.3740 4.5456 20 6 0.4888 -4.8157 4.0328 21 6 1.8483 -5.2496 3.5276 22 6 2.3428 -6.5143 3.2554 23 6 3.6353 -6.6708 2.7950 24 6 4.4392 -5.5621 2.6055 25 6 3.9478 -4.3002 2.8764 26 6 2.6539 -4.1398 3.3376 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1858 1.1177 0.4343 32 1 3.9675 4.4801 -0.8472 33 1 3.4388 -1.8969 1.9391 34 1 0.7079 -2.8325 1.9012 35 1 0.8794 -1.2590 2.7154 36 1 3.4914 -1.6867 4.0014 37 1 0.9364 -3.3712 5.6074 38 1 -0.1940 -2.7665 4.3504 39 1 0.1627 -5.4644 4.8457 40 1 -0.2386 -4.8305 3.2211 41 1 1.7152 -7.3809 3.4028 42 1 4.0178 -7.6583 2.5832 43 1 5.4502 -5.6827 2.2451 44 1 4.5762 -3.4345 2.7277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162237962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -96.588519 kcal Electronic energy + Delta-G solvation = -28571.753181 eV Core-core repulsion = 24615.689212 eV Total energy + Delta-G solvation = -3956.063969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83051 -37.60266 -36.62575 -35.51559 -35.19085 -34.84900 -34.26585 -32.44645 -31.09003 -29.36117 -27.83196 -27.73456 -25.09386 -24.44620 -22.90795 -22.31239 -21.30082 -20.49399 -18.98127 -17.78698 -17.33515 -16.92815 -16.61301 -16.19199 -15.90615 -15.53261 -15.24485 -14.82943 -14.53709 -14.25154 -14.12841 -13.59336 -13.49504 -13.36082 -13.30610 -12.87254 -12.70633 -12.35204 -12.20987 -12.16673 -11.88366 -11.76552 -11.65846 -11.61309 -11.45901 -11.18142 -11.14902 -11.08278 -10.88027 -10.71260 -10.52784 -10.21469 -10.04540 -9.78399 -9.41813 -9.00448 -8.74173 -8.45821 -8.09350 -6.07560 -4.11692 1.13822 1.17434 1.23962 3.30858 3.37302 3.42193 3.46023 3.54438 3.92553 4.07408 4.10128 4.33842 4.43897 4.48182 4.74599 4.83549 4.84726 5.00891 5.03409 5.12945 5.27517 5.30546 5.33280 5.42403 5.48836 5.56269 5.59589 5.65826 5.77474 5.83745 5.91186 5.94937 5.98998 6.25876 6.27829 6.33798 6.41095 6.53527 6.80616 6.96043 7.22334 7.37927 7.41464 7.58654 7.89845 8.18967 8.90712 9.53657 11.01023 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003281 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.312575 B = 8533.053975 C = 8847.585902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.783 3.217 13 O -0.963 6.963 14 O -0.996 6.996 15 N -1.133 6.133 16 C 0.103 3.897 17 C 0.169 3.831 18 O -0.546 6.546 19 C -0.103 4.103 20 C -0.084 4.084 21 C -0.089 4.089 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.118 4.118 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.406 0.594 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.378 0.622 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -17.349 12.626 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.790 3.210 13 O -0.946 6.946 14 O -0.979 6.979 15 N -0.892 5.892 16 C -0.024 4.024 17 C 0.127 3.873 18 O -0.352 6.352 19 C -0.141 4.141 20 C -0.121 4.121 21 C -0.089 4.089 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.113 4.113 26 C -0.119 4.119 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.226 0.774 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.053 -17.766 12.277 22.179 hybrid contribution 0.994 0.779 -0.990 1.605 sum -4.059 -16.986 11.288 20.795 Atomic orbital electron populations 1.21383 0.80196 1.03564 1.00175 1.57586 1.14286 1.23286 1.88628 1.19053 0.90991 0.78707 0.97678 1.21497 1.36149 1.06373 0.92946 0.92188 1.24929 0.95068 0.96499 0.97511 1.69912 1.37282 1.15297 1.30955 0.86510 0.77543 0.78840 0.84653 1.20594 1.21034 1.19700 1.01922 0.73435 0.72913 0.72697 1.93645 1.40686 1.84862 1.75443 1.93522 1.67579 1.60173 1.76657 1.56270 1.13973 1.86366 1.32597 1.21865 0.88857 1.00292 0.91380 1.20932 0.90327 0.85863 0.90199 1.86573 1.40121 1.65648 1.42839 1.22297 0.96067 0.95208 1.00552 1.21101 0.94130 0.95833 1.01014 1.20539 0.96093 0.93178 0.99093 1.20607 0.95803 0.96027 1.00291 1.21067 0.94013 0.98825 0.99426 1.21071 1.00134 0.92304 1.00320 1.20547 0.94498 0.97644 0.98631 1.21005 0.94696 0.96037 1.00150 0.94314 0.90299 0.91588 0.94663 0.94463 0.92669 0.76097 0.89561 0.90253 0.77413 0.89216 0.89226 0.90016 0.89434 0.86141 0.85811 0.85622 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.68 59.85 0.64 2.20 16 2 N -0.99 -20.27 3.23 -123.05 -0.40 -20.66 16 3 C 0.26 6.39 5.08 -5.19 -0.03 6.36 16 4 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 S 2.78 54.35 6.10 -107.50 -0.66 53.69 16 13 O -0.96 -22.78 17.11 -57.17 -0.98 -23.76 16 14 O -1.00 -20.59 16.21 -57.17 -0.93 -21.52 16 15 N -1.13 -16.32 5.48 -10.61 -0.06 -16.38 16 16 C 0.10 1.26 5.35 -4.04 -0.02 1.24 16 17 C 0.17 1.86 0.99 -90.73 -0.09 1.77 16 18 O -0.55 -6.27 13.05 -35.23 -0.46 -6.73 16 19 C -0.10 -0.91 6.32 -25.32 -0.16 -1.07 16 20 C -0.08 -0.70 6.76 -26.85 -0.18 -0.88 16 21 C -0.09 -0.96 6.14 -104.12 -0.64 -1.59 16 22 C -0.11 -1.09 10.04 -39.54 -0.40 -1.48 16 23 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 24 C -0.12 -1.27 10.05 -39.62 -0.40 -1.67 16 25 C -0.10 -1.09 9.22 -39.61 -0.37 -1.46 16 26 C -0.12 -1.38 4.81 -104.19 -0.50 -1.88 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 29 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 30 H 0.04 0.89 8.11 -51.93 -0.42 0.46 16 31 H 0.04 0.98 7.61 -51.92 -0.40 0.58 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.41 5.13 6.00 -34.47 -0.21 4.92 16 34 H 0.09 1.05 7.75 -51.93 -0.40 0.65 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.38 3.60 7.91 45.56 0.36 3.96 16 37 H 0.09 0.79 8.11 -51.93 -0.42 0.36 16 38 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.12 1.19 7.12 -52.49 -0.37 0.81 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -35.57 374.10 -10.64 -46.21 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.56 Total: 5.51 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.96 Total: -13.53 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.28 Total: -62.33 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -2.36 Total: -52.00 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.66 Total: 53.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.57 -10.64 -46.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162237962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.377 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds