Wall clock time and date at job start Sat Apr 11 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99635 * 2 1 4 4 C 1.50702 * 109.47444 * 274.99770 * 3 2 1 5 5 H 1.08000 * 119.99594 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00284 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00061 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99875 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47211 * 90.00215 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00018 * 8 6 4 11 11 H 1.48499 * 109.47287 * 329.99883 * 8 6 4 12 12 S 1.65600 * 119.99928 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.39860 * 156.45461 * 12 2 1 14 14 O 1.42102 * 106.40043 * 23.54283 * 12 2 1 15 15 N 1.65599 * 107.21735 * 269.99996 * 12 2 1 16 16 C 1.46499 * 120.00012 * 65.00259 * 15 12 2 17 17 C 1.53000 * 109.46840 * 165.00017 * 16 15 12 18 18 O 1.42894 * 110.27238 * 64.29994 * 17 16 15 19 19 C 1.54351 * 110.30016 * 186.37393 * 17 16 15 20 20 C 1.54340 * 102.39414 * 92.57581 * 19 17 16 21 21 C 1.51378 * 105.17052 * 26.34387 * 20 19 17 22 22 C 1.38494 * 130.39198 * 162.81334 * 21 20 19 23 23 C 1.38094 * 120.21723 * 179.97438 * 22 21 20 24 24 C 1.38260 * 119.93320 * 0.02562 * 23 22 21 25 25 C 1.38101 * 119.93250 * 359.97438 * 24 23 22 26 26 C 1.38300 * 120.28322 * 0.02656 * 25 24 23 27 27 H 1.09003 * 109.46891 * 270.00056 * 1 2 3 28 28 H 1.09001 * 109.47292 * 29.99884 * 1 2 3 29 29 H 1.09001 * 109.47185 * 149.99877 * 1 2 3 30 30 H 1.08999 * 109.47915 * 35.00316 * 3 2 1 31 31 H 1.09008 * 109.46823 * 155.00124 * 3 2 1 32 32 H 0.96995 * 120.00602 * 180.02562 * 7 6 4 33 33 H 0.97001 * 119.99797 * 244.99459 * 15 12 2 34 34 H 1.09002 * 109.47391 * 44.99686 * 16 15 12 35 35 H 1.09001 * 109.46813 * 284.99743 * 16 15 12 36 36 H 0.96700 * 113.99666 * 300.69781 * 18 17 16 37 37 H 1.09003 * 110.81893 * 210.79994 * 19 17 16 38 38 H 1.09004 * 110.82141 * 334.34783 * 19 17 16 39 39 H 1.08993 * 110.30656 * 145.26979 * 20 19 17 40 40 H 1.09005 * 110.30195 * 267.42632 * 20 19 17 41 41 H 1.08012 * 119.89337 * 0.02562 * 22 21 20 42 42 H 1.07998 * 120.03734 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02906 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.89051 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 3.0006 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5667 -3.4208 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3531 -3.5445 11 1 3.2265 2.4091 -4.3497 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4113 -2.4062 -0.5456 15 7 2.5381 -1.8594 1.5810 16 6 1.3946 -2.1789 2.4392 17 6 1.8876 -2.8866 3.7030 18 8 2.7108 -2.0083 4.4730 19 6 0.6898 -3.3740 4.5456 20 6 0.4888 -4.8157 4.0328 21 6 1.8483 -5.2496 3.5276 22 6 2.3428 -6.5143 3.2554 23 6 3.6353 -6.6708 2.7950 24 6 4.4392 -5.5621 2.6055 25 6 3.9478 -4.3002 2.8764 26 6 2.6539 -4.1398 3.3376 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1858 1.1177 0.4343 32 1 3.9675 4.4801 -0.8472 33 1 3.4388 -1.8969 1.9391 34 1 0.7079 -2.8325 1.9012 35 1 0.8794 -1.2590 2.7154 36 1 3.4914 -1.6867 4.0014 37 1 0.9364 -3.3712 5.6074 38 1 -0.1940 -2.7665 4.3504 39 1 0.1627 -5.4644 4.8457 40 1 -0.2386 -4.8305 3.2211 41 1 1.7152 -7.3809 3.4028 42 1 4.0178 -7.6583 2.5832 43 1 5.4502 -5.6827 2.2451 44 1 4.5762 -3.4345 2.7277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162237962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:27 Heat of formation + Delta-G solvation = -123.484174 kcal Electronic energy + Delta-G solvation = -28572.919464 eV Core-core repulsion = 24615.689212 eV Total energy + Delta-G solvation = -3957.230252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61025 -38.48460 -38.25395 -37.23045 -36.88654 -35.60441 -35.38605 -34.51102 -31.87286 -30.12001 -29.67361 -28.64169 -26.78940 -25.33224 -24.22618 -23.65318 -22.05701 -21.33908 -20.37231 -19.08001 -18.69638 -18.44054 -18.11517 -17.69712 -16.96497 -16.67298 -16.35913 -16.20391 -15.63971 -15.33351 -15.12286 -14.95989 -14.90758 -14.38783 -14.31850 -14.07272 -13.90439 -13.65587 -13.55151 -13.35587 -13.23615 -13.17349 -13.05583 -12.93262 -12.86531 -12.49914 -12.48791 -12.40786 -12.35720 -11.99864 -11.87951 -11.77139 -11.68135 -11.09635 -10.63362 -10.55994 -9.80899 -9.78584 -9.50363 -8.21345 -6.33277 -0.37067 0.36862 0.44402 1.38353 1.40706 1.51209 1.99998 2.39512 2.58958 2.76689 3.09553 3.13549 3.35236 3.43987 3.54271 3.67456 4.03540 4.06012 4.12400 4.13504 4.28327 4.32860 4.48375 4.55177 4.63178 4.67248 4.73283 4.80835 4.83329 4.88664 5.04070 5.07490 5.11460 5.18848 5.20033 5.23640 5.44379 5.51189 5.57440 5.63163 5.68260 5.80045 6.00627 6.07038 6.10314 6.59772 6.74957 7.35710 8.86113 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003281 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.312575 B = 8533.053975 C = 8847.585902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.001 6.001 3 C 0.273 3.727 4 C -0.552 4.552 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.801 3.199 13 O -1.010 7.010 14 O -1.007 7.007 15 N -1.118 6.118 16 C 0.097 3.903 17 C 0.171 3.829 18 O -0.556 6.556 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.118 4.118 26 C -0.141 4.141 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.017 0.983 32 H 0.268 0.732 33 H 0.414 0.586 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.382 0.618 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -18.331 13.160 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.843 5.843 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.200 1.200 12 S 2.809 3.191 13 O -0.994 6.994 14 O -0.991 6.991 15 N -0.881 5.881 16 C -0.029 4.029 17 C 0.128 3.872 18 O -0.363 6.363 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.102 4.102 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.136 4.136 26 C -0.141 4.141 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.250 0.750 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.434 -18.754 12.812 23.607 hybrid contribution 1.412 0.990 -1.087 2.038 sum -5.022 -17.765 11.725 21.870 Atomic orbital electron populations 1.21637 0.78015 1.03642 1.02712 1.57456 1.15776 1.21838 1.89257 1.18608 0.90451 0.80222 0.95818 1.21848 1.36326 1.06714 0.94250 0.93107 1.25728 0.94756 0.96758 1.01423 1.69996 1.37773 1.15712 1.32753 0.85596 0.78184 0.78304 0.79886 1.18972 1.20327 1.20015 1.01130 0.72119 0.72475 0.73405 1.93575 1.42989 1.85455 1.77404 1.93500 1.67683 1.60206 1.77681 1.55771 1.15417 1.85680 1.31253 1.22142 0.88013 1.01193 0.91577 1.21030 0.90993 0.85367 0.89791 1.86559 1.40507 1.65851 1.43356 1.22383 0.95664 0.95795 1.00141 1.21168 0.92998 0.95679 1.01895 1.20951 0.97145 0.93248 0.98848 1.20971 0.96171 0.96694 0.99759 1.21426 0.94087 0.99653 0.98700 1.21363 1.01094 0.92426 1.00622 1.20785 0.95036 0.98325 0.99430 1.21208 0.95057 0.96810 1.01022 0.90544 0.91070 0.90671 0.95178 0.96500 0.92336 0.74998 0.89202 0.89049 0.76856 0.89145 0.87430 0.87999 0.88552 0.83830 0.83551 0.84392 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 10.68 127.77 1.36 4.10 16 2 N -1.00 -40.59 3.23 -543.21 -1.75 -42.34 16 3 C 0.27 13.72 5.08 85.63 0.43 14.16 16 4 C -0.55 -31.37 9.38 25.60 0.24 -31.13 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.74 5.46 84.66 0.46 1.20 16 7 N -0.92 -53.99 13.29 21.45 0.28 -53.71 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 S 2.80 109.51 6.10 -56.49 -0.34 109.16 16 13 O -1.01 -49.03 17.11 -128.00 -2.19 -51.22 16 14 O -1.01 -41.02 16.21 -128.00 -2.07 -43.09 16 15 N -1.12 -31.73 5.48 -187.49 -1.03 -32.76 16 16 C 0.10 2.21 5.35 86.38 0.46 2.67 16 17 C 0.17 3.51 0.99 -10.87 -0.01 3.50 16 18 O -0.56 -12.29 13.05 -148.98 -1.94 -14.23 16 19 C -0.10 -1.55 6.32 31.51 0.20 -1.36 16 20 C -0.08 -1.13 6.76 30.52 0.21 -0.92 16 21 C -0.10 -2.01 6.14 -19.54 -0.12 -2.13 16 22 C -0.12 -2.12 10.04 22.30 0.22 -1.90 16 23 C -0.12 -2.20 10.05 22.24 0.22 -1.98 16 24 C -0.14 -2.84 10.05 22.24 0.22 -2.61 16 25 C -0.12 -2.69 9.22 22.25 0.21 -2.49 16 26 C -0.14 -3.15 4.81 -19.59 -0.09 -3.25 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 30 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 31 H 0.02 0.92 7.61 -2.38 -0.02 0.90 16 32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.41 10.56 6.00 -96.75 -0.58 9.98 16 34 H 0.09 2.01 7.75 -2.39 -0.02 2.00 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.38 7.24 7.91 -74.06 -0.59 6.65 16 37 H 0.09 1.38 8.11 -2.39 -0.02 1.36 16 38 H 0.11 1.23 7.90 -2.39 -0.02 1.21 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.14 1.80 8.06 -2.90 -0.02 1.78 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.12 2.50 7.12 -2.91 -0.02 2.48 16 Total: -1.00 -76.21 374.10 -3.14 -79.35 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.14 Total: 24.25 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.02 Total: -22.13 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -2.49 Total: -128.81 kcal Atomic # 8 Polarization: -102.34 SS G_CDS: -6.21 Total: -108.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 109.51 SS G_CDS: -0.34 Total: 109.16 kcal Total: -76.21 -3.14 -79.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162237962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.139 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds