Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99866 * 2 1 4 4 C 1.50706 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00105 * 90.00481 * 4 3 2 6 6 C 1.38208 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.38211 * 119.99641 * 359.96158 * 7 6 5 9 9 S 1.76192 * 119.99991 * 179.97438 * 8 7 6 10 10 O 1.42108 * 106.40473 * 336.46064 * 9 8 7 11 11 O 1.42099 * 106.40540 * 203.53865 * 9 8 7 12 12 N 1.65601 * 107.21921 * 89.99778 * 9 8 7 13 13 C 1.46969 * 120.59335 * 89.99860 * 12 9 8 14 14 C 1.53365 * 108.63823 * 235.25127 * 13 12 9 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59741 * 270.02589 * 12 9 8 26 26 C 1.38216 * 119.99669 * 270.21633 * 4 3 2 27 27 H 1.09005 * 109.47227 * 59.99411 * 1 2 3 28 28 H 1.09005 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47070 * 299.99209 * 1 2 3 30 30 H 1.09001 * 109.46722 * 60.00637 * 3 2 1 31 31 H 1.08994 * 109.47185 * 300.00234 * 3 2 1 32 32 H 1.08006 * 119.99998 * 359.97438 * 5 4 3 33 33 H 1.08006 * 119.99914 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.00000 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.60759 * 115.50390 * 13 12 9 36 36 H 1.08997 * 109.60686 * 354.99877 * 13 12 9 37 37 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 38 38 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 39 39 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 41 41 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 42 42 H 1.09002 * 109.60509 * 244.49628 * 25 12 9 43 43 H 1.09002 * 109.60747 * 5.00353 * 25 12 9 44 44 H 1.07998 * 120.00346 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2012 1.1322 -1.1982 6 6 5.5789 1.0226 -1.1987 7 6 6.2686 0.9677 -0.0017 8 6 5.5802 1.0233 1.1955 9 16 6.4590 0.9526 2.7210 10 8 7.6940 0.3069 2.4432 11 8 5.5369 0.4809 3.6938 12 7 6.8305 2.5096 3.1453 13 6 5.9065 3.3010 3.9699 14 6 5.5818 4.6040 3.2291 15 7 6.8412 5.2194 2.7872 16 6 7.1479 6.5072 3.1373 17 1 8.1804 6.8109 3.2277 18 6 6.1319 7.4239 3.3703 19 7 4.9126 7.1785 2.9399 20 14 6.4952 9.0059 4.2950 21 1 7.9322 9.0423 4.6682 22 1 6.1798 10.1695 3.4279 23 1 5.6626 9.0636 5.5233 24 6 7.7625 4.4300 1.9579 25 6 8.0899 3.1251 2.7035 26 6 4.2015 1.1272 1.1961 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.6624 1.1747 -2.1333 33 1 6.1168 0.9798 -2.1343 34 1 7.3451 0.8816 -0.0022 35 1 6.3756 3.5312 4.9265 36 1 4.9892 2.7362 4.1359 37 1 5.0573 5.2850 3.8993 38 1 4.9560 4.3891 2.3628 39 1 4.2027 7.8192 3.1024 40 1 7.2898 4.2002 1.0031 41 1 8.6786 4.9960 1.7887 42 1 8.7143 3.3427 3.5700 43 1 8.6144 2.4441 2.0332 44 1 3.6633 1.1658 2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171631968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -55.848195 kcal Electronic energy + Delta-G solvation = -28483.767419 eV Core-core repulsion = 24529.470083 eV Total energy + Delta-G solvation = -3954.297336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.55580 -37.69904 -37.60133 -37.06929 -35.63436 -33.83950 -32.27649 -31.28197 -31.11788 -30.19094 -27.50113 -26.42947 -25.50916 -23.44522 -23.15424 -22.89183 -21.85263 -20.02675 -18.59147 -17.87610 -17.41557 -16.57596 -16.36324 -16.19901 -15.99916 -15.60756 -15.31817 -14.87335 -14.74727 -14.09982 -13.95357 -13.76041 -13.65198 -13.47643 -13.02720 -12.97207 -12.86758 -12.50319 -12.24995 -12.14037 -12.00956 -11.87730 -11.68728 -11.41863 -11.22984 -11.15974 -10.85947 -10.77655 -10.69150 -10.42053 -10.25172 -9.98565 -9.91296 -9.77565 -9.36718 -9.00339 -8.77629 -8.50263 -6.72473 -5.86916 -3.30902 0.55751 0.87558 1.18444 3.07495 3.32453 3.39276 3.41235 3.43145 3.84571 4.01476 4.40777 4.43095 4.65673 4.75697 4.88721 5.00479 5.06564 5.12515 5.16000 5.17308 5.26113 5.29696 5.39826 5.44238 5.49487 5.70086 5.74773 5.82467 5.90322 6.02821 6.03505 6.16585 6.24408 6.30960 6.34399 6.41564 6.60934 6.75494 6.79367 6.89736 6.90249 7.24090 7.52107 7.72325 8.35217 9.11537 9.74408 10.31561 11.20708 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004034 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.914080 B = 6939.135909 C = 8198.284674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.102 3.898 4 C -0.113 4.113 5 C -0.047 4.047 6 C -0.143 4.143 7 C -0.012 4.012 8 C -0.673 4.673 9 S 2.689 3.311 10 O -0.965 6.965 11 O -0.962 6.962 12 N -0.984 5.984 13 C 0.095 3.905 14 C 0.157 3.843 15 N -0.588 5.588 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.288 1.288 24 C 0.131 3.869 25 C 0.104 3.896 26 C 0.006 3.994 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.022 0.978 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 -12.318 -7.093 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.026 3.974 4 C -0.114 4.114 5 C -0.065 4.065 6 C -0.162 4.162 7 C -0.031 4.031 8 C -0.758 4.758 9 S 2.779 3.221 10 O -0.955 6.955 11 O -0.952 6.952 12 N -0.824 5.824 13 C -0.031 4.031 14 C 0.030 3.970 15 N -0.311 5.311 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.215 1.215 24 C 0.003 3.997 25 C -0.023 4.023 26 C -0.013 4.013 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.836 -13.106 -6.609 15.171 hybrid contribution -0.553 1.514 -0.318 1.643 sum -4.389 -11.592 -6.927 14.199 Atomic orbital electron populations 1.22768 0.80876 1.02812 1.00184 1.87962 1.19728 1.27470 1.95467 1.21364 0.89337 0.85086 1.01652 1.19633 0.94386 1.03777 0.93578 1.21301 0.94477 0.93141 0.97567 1.21234 0.94311 1.02330 0.98331 1.20936 1.00170 0.90834 0.91159 1.31162 1.06269 1.17465 1.20943 1.02023 0.73407 0.72980 0.73677 1.93539 1.42937 1.73128 1.85884 1.93549 1.65076 1.78851 1.57727 1.57408 1.28728 1.31841 1.64415 1.22364 0.91437 0.94825 0.94475 1.21179 0.88276 0.90422 0.97132 1.43916 1.19205 1.10960 1.57001 1.19248 0.92360 0.85703 1.40953 0.91450 1.25053 0.96332 0.97615 1.00534 1.70020 1.01241 1.36479 1.46945 0.86223 0.77848 0.83177 0.79504 1.20207 1.21771 1.21495 1.21379 0.94921 0.90951 0.92445 1.22148 0.83807 0.96577 0.99749 1.20780 0.92001 0.89873 0.98668 0.94037 0.89573 0.93749 0.91649 0.92043 0.85361 0.84949 0.84297 0.91240 0.90518 0.88276 0.95961 0.93604 0.95949 0.91553 0.91010 0.90384 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.70 10.69 -35.23 -0.38 -5.08 16 3 C 0.10 1.17 6.06 36.01 0.22 1.39 16 4 C -0.11 -1.52 5.51 -104.62 -0.58 -2.09 16 5 C -0.05 -0.56 9.70 -39.59 -0.38 -0.94 16 6 C -0.14 -1.71 10.05 -39.58 -0.40 -2.10 16 7 C -0.01 -0.16 9.52 -39.58 -0.38 -0.54 16 8 C -0.67 -10.31 5.97 -39.58 -0.24 -10.55 16 9 S 2.69 44.70 5.69 -107.50 -0.61 44.09 16 10 O -0.96 -17.08 15.98 -57.17 -0.91 -17.99 16 11 O -0.96 -17.72 15.97 -57.17 -0.91 -18.63 16 12 N -0.98 -17.03 3.26 -113.00 -0.37 -17.40 16 13 C 0.10 1.76 6.55 -3.60 -0.02 1.74 16 14 C 0.16 3.51 5.51 -3.60 -0.02 3.49 16 15 N -0.59 -13.88 2.96 -171.77 -0.51 -14.38 16 16 C -0.25 -6.59 9.57 -15.06 -0.14 -6.73 16 17 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.09 4.91 -17.44 -0.09 0.00 16 19 N -0.90 -24.96 11.20 55.49 0.62 -24.33 16 20 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.13 2.55 6.70 -3.37 -0.02 2.53 16 25 C 0.10 1.74 6.56 -3.37 -0.02 1.72 16 26 C 0.01 0.09 9.18 -39.58 -0.36 -0.27 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.14 1.67 7.62 -52.49 -0.40 1.28 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.29 7.09 -51.93 -0.37 0.92 16 37 H 0.10 2.46 6.00 -51.93 -0.31 2.15 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.13 7.09 -51.93 -0.37 0.76 16 44 H 0.14 1.99 7.61 -52.49 -0.40 1.59 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -32.66 372.28 -10.27 -42.92 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.45 Total: 0.34 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.32 Total: -11.00 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.26 Total: -56.12 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.20 Total: -41.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 16 Polarization: 44.70 SS G_CDS: -0.61 Total: 44.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.66 -10.27 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171631968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.926 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds