Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99866 * 2 1 4 4 C 1.50706 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00105 * 90.00481 * 4 3 2 6 6 C 1.38208 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.38211 * 119.99641 * 359.96158 * 7 6 5 9 9 S 1.76192 * 119.99991 * 179.97438 * 8 7 6 10 10 O 1.42108 * 106.40473 * 336.46064 * 9 8 7 11 11 O 1.42099 * 106.40540 * 203.53865 * 9 8 7 12 12 N 1.65601 * 107.21921 * 89.99778 * 9 8 7 13 13 C 1.46969 * 120.59335 * 89.99860 * 12 9 8 14 14 C 1.53365 * 108.63823 * 235.25127 * 13 12 9 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59741 * 270.02589 * 12 9 8 26 26 C 1.38216 * 119.99669 * 270.21633 * 4 3 2 27 27 H 1.09005 * 109.47227 * 59.99411 * 1 2 3 28 28 H 1.09005 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47070 * 299.99209 * 1 2 3 30 30 H 1.09001 * 109.46722 * 60.00637 * 3 2 1 31 31 H 1.08994 * 109.47185 * 300.00234 * 3 2 1 32 32 H 1.08006 * 119.99998 * 359.97438 * 5 4 3 33 33 H 1.08006 * 119.99914 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.00000 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.60759 * 115.50390 * 13 12 9 36 36 H 1.08997 * 109.60686 * 354.99877 * 13 12 9 37 37 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 38 38 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 39 39 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 41 41 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 42 42 H 1.09002 * 109.60509 * 244.49628 * 25 12 9 43 43 H 1.09002 * 109.60747 * 5.00353 * 25 12 9 44 44 H 1.07998 * 120.00346 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2012 1.1322 -1.1982 6 6 5.5789 1.0226 -1.1987 7 6 6.2686 0.9677 -0.0017 8 6 5.5802 1.0233 1.1955 9 16 6.4590 0.9526 2.7210 10 8 7.6940 0.3069 2.4432 11 8 5.5369 0.4809 3.6938 12 7 6.8305 2.5096 3.1453 13 6 5.9065 3.3010 3.9699 14 6 5.5818 4.6040 3.2291 15 7 6.8412 5.2194 2.7872 16 6 7.1479 6.5072 3.1373 17 1 8.1804 6.8109 3.2277 18 6 6.1319 7.4239 3.3703 19 7 4.9126 7.1785 2.9399 20 14 6.4952 9.0059 4.2950 21 1 7.9322 9.0423 4.6682 22 1 6.1798 10.1695 3.4279 23 1 5.6626 9.0636 5.5233 24 6 7.7625 4.4300 1.9579 25 6 8.0899 3.1251 2.7035 26 6 4.2015 1.1272 1.1961 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.6624 1.1747 -2.1333 33 1 6.1168 0.9798 -2.1343 34 1 7.3451 0.8816 -0.0022 35 1 6.3756 3.5312 4.9265 36 1 4.9892 2.7362 4.1359 37 1 5.0573 5.2850 3.8993 38 1 4.9560 4.3891 2.3628 39 1 4.2027 7.8192 3.1024 40 1 7.2898 4.2002 1.0031 41 1 8.6786 4.9960 1.7887 42 1 8.7143 3.3427 3.5700 43 1 8.6144 2.4441 2.0332 44 1 3.6633 1.1658 2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171631968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -77.662637 kcal Electronic energy + Delta-G solvation = -28484.713364 eV Core-core repulsion = 24529.470083 eV Total energy + Delta-G solvation = -3955.243281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52225 -39.20433 -38.55527 -38.43725 -37.02194 -35.58911 -33.23380 -32.91596 -32.29001 -31.82585 -28.28794 -28.20702 -26.32861 -25.06148 -24.50417 -24.32080 -22.84725 -21.61647 -20.02303 -19.21123 -18.73196 -17.90942 -17.39682 -17.37524 -17.08067 -16.81655 -16.65824 -16.23383 -15.83214 -15.48203 -15.39709 -15.33022 -15.09051 -14.93896 -14.62372 -14.05097 -13.81197 -13.63069 -13.54921 -13.35785 -13.24976 -13.19596 -13.01040 -12.92918 -12.63905 -12.46651 -12.44273 -12.15702 -12.09814 -11.98943 -11.88389 -11.77023 -11.41081 -10.71210 -10.59125 -10.44537 -10.12483 -10.00788 -8.61533 -7.85070 -5.31628 -0.71101 -0.21066 0.17615 1.48271 1.51885 1.60849 1.83893 2.35042 2.53082 2.68241 3.01839 3.20718 3.29776 3.64032 3.71346 3.78595 3.84112 3.95314 4.14185 4.20451 4.30190 4.32021 4.39169 4.48640 4.54007 4.55206 4.58513 4.66462 4.73493 4.74180 4.84311 4.85389 4.90978 5.00539 5.11436 5.20491 5.23701 5.32158 5.33967 5.59888 5.66434 5.76395 5.79593 6.13175 6.40271 7.15679 7.85369 8.38374 9.20106 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004034 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.914080 B = 6939.135909 C = 8198.284674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.411 6.411 3 C 0.101 3.899 4 C -0.125 4.125 5 C -0.046 4.046 6 C -0.140 4.140 7 C -0.026 4.026 8 C -0.685 4.685 9 S 2.704 3.296 10 O -0.975 6.975 11 O -0.984 6.984 12 N -0.987 5.987 13 C 0.107 3.893 14 C 0.166 3.834 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.070 0.930 18 C -0.046 4.046 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.129 3.871 25 C 0.109 3.891 26 C -0.018 4.018 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.005 0.995 39 H 0.250 0.750 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -12.939 -8.521 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.331 6.331 3 C 0.025 3.975 4 C -0.126 4.126 5 C -0.064 4.064 6 C -0.158 4.158 7 C -0.045 4.045 8 C -0.774 4.774 9 S 2.797 3.203 10 O -0.965 6.965 11 O -0.975 6.975 12 N -0.826 5.826 13 C -0.020 4.020 14 C 0.039 3.961 15 N -0.330 5.330 16 C -0.389 4.389 17 H 0.088 0.912 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.218 1.218 24 C 0.002 3.998 25 C -0.018 4.018 26 C -0.038 4.038 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.246 -13.749 -8.012 16.241 hybrid contribution -0.758 1.647 0.006 1.813 sum -4.004 -12.102 -8.005 15.052 Atomic orbital electron populations 1.22975 0.79133 1.03992 1.01150 1.87917 1.21704 1.27769 1.95661 1.21410 0.88347 0.85204 1.02558 1.19965 0.95607 1.03403 0.93640 1.21753 0.94871 0.91534 0.98250 1.21681 0.94513 1.00570 0.99061 1.21266 1.01102 0.90914 0.91250 1.30860 1.06356 1.19580 1.20579 1.01387 0.72906 0.72285 0.73711 1.93516 1.43627 1.73206 1.86161 1.93513 1.65527 1.79191 1.59264 1.57398 1.28752 1.31839 1.64602 1.22091 0.92465 0.93397 0.94015 1.20949 0.87697 0.91387 0.96073 1.44167 1.19937 1.10837 1.58018 1.19554 0.92471 0.86762 1.40145 0.91249 1.25720 0.96304 1.00456 1.01683 1.70155 1.01941 1.37378 1.48403 0.85275 0.77910 0.79690 0.77927 1.19193 1.22235 1.21840 1.21524 0.94310 0.91798 0.92192 1.22131 0.83732 0.95734 1.00175 1.20904 0.92216 0.91290 0.99389 0.92449 0.88366 0.93395 0.91950 0.89943 0.82220 0.81443 0.82897 0.91064 0.89144 0.91229 0.97736 0.94094 0.96017 0.90756 0.90542 0.87602 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.53 10.69 -148.98 -1.59 -11.12 16 3 C 0.10 2.22 6.06 71.24 0.43 2.65 16 4 C -0.13 -3.24 5.51 -19.86 -0.11 -3.35 16 5 C -0.05 -0.98 9.70 22.27 0.22 -0.77 16 6 C -0.14 -2.92 10.05 22.27 0.22 -2.69 16 7 C -0.03 -0.66 9.52 22.27 0.21 -0.45 16 8 C -0.69 -20.57 5.97 22.27 0.13 -20.44 16 9 S 2.70 88.33 5.69 -56.49 -0.32 88.01 16 10 O -0.97 -33.22 15.98 -128.00 -2.04 -35.26 16 11 O -0.98 -36.36 15.97 -128.00 -2.04 -38.41 16 12 N -0.99 -33.50 3.26 -511.44 -1.67 -35.17 16 13 C 0.11 3.98 6.55 86.41 0.57 4.55 16 14 C 0.17 7.59 5.51 86.41 0.48 8.07 16 15 N -0.61 -28.70 2.96 -697.36 -2.06 -30.76 16 16 C -0.26 -13.51 9.57 84.03 0.80 -12.70 16 17 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 18 C -0.05 -2.46 4.91 84.86 0.42 -2.04 16 19 N -0.93 -52.72 11.20 21.65 0.24 -52.48 16 20 Si 0.96 43.28 29.59 68.60 2.03 45.31 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.13 4.89 6.70 86.56 0.58 5.47 16 25 C 0.11 3.48 6.56 86.56 0.57 4.04 16 26 C -0.02 -0.55 9.18 22.27 0.20 -0.35 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 31 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.15 3.34 7.62 -2.91 -0.02 3.31 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.09 3.09 7.09 -2.39 -0.02 3.07 16 37 H 0.07 3.59 6.00 -2.39 -0.01 3.57 16 38 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 39 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.11 2.81 7.09 -2.39 -0.02 2.79 16 44 H 0.13 3.96 7.61 -2.91 -0.02 3.93 16 Total: -1.00 -70.06 372.28 -0.50 -70.55 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.99 Total: 15.74 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.97 Total: -16.41 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -3.49 Total: -118.41 kcal Atomic # 8 Polarization: -79.11 SS G_CDS: -5.68 Total: -84.79 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 88.33 SS G_CDS: -0.32 Total: 88.01 kcal Total: -70.06 -0.50 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171631968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.109 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds