Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38235 * 119.99568 * 269.72723 * 5 2 1 7 7 C 1.38240 * 120.00001 * 179.76503 * 6 5 2 8 8 C 1.38237 * 119.99230 * 0.48367 * 7 6 5 9 9 C 1.50707 * 119.99649 * 179.76804 * 8 7 6 10 10 N 1.46500 * 109.47019 * 270.02423 * 9 8 7 11 11 C 1.34785 * 119.99705 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99982 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99355 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99382 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46788 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46600 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46670 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99654 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00526 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46947 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47183 * 119.99735 * 21 19 17 24 24 H 1.48498 * 109.46827 * 239.99722 * 21 19 17 25 25 C 1.38227 * 120.00617 * 359.79189 * 8 7 6 26 26 C 1.38231 * 120.00074 * 89.99637 * 5 2 1 27 27 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 28 28 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 29 29 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 30 30 H 1.08000 * 120.00257 * 359.97438 * 6 5 2 31 31 H 1.07998 * 120.00425 * 180.25449 * 7 6 5 32 32 H 1.09008 * 109.47044 * 30.02344 * 9 8 7 33 33 H 1.08991 * 109.47296 * 150.02040 * 9 8 7 34 34 H 0.96998 * 120.00068 * 359.97438 * 10 9 8 35 35 H 0.96998 * 120.01008 * 0.02562 * 13 11 10 36 36 H 1.08994 * 109.47422 * 300.00299 * 14 13 11 37 37 H 1.09006 * 109.47013 * 60.00710 * 14 13 11 38 38 H 1.08994 * 109.47024 * 299.99821 * 15 14 13 39 39 H 1.08996 * 109.46707 * 60.00664 * 15 14 13 40 40 H 1.09004 * 109.46939 * 299.99470 * 16 15 14 41 41 H 1.08993 * 109.47592 * 60.00211 * 16 15 14 42 42 H 0.96995 * 120.00021 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.00648 * 179.97438 * 25 8 7 44 44 H 1.07995 * 119.99970 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4317 -1.9877 -1.7659 7 6 2.7719 -2.4816 -3.0114 8 6 2.9439 -1.6153 -4.0749 9 6 3.3199 -2.1531 -5.4316 10 7 4.7793 -2.2004 -5.5508 11 6 5.3484 -2.6511 -6.6864 12 8 4.6505 -3.0189 -7.6117 13 7 6.6909 -2.6941 -6.7962 14 6 7.3095 -3.1846 -8.0304 15 6 8.8325 -3.1303 -7.8939 16 6 9.4785 -3.6419 -9.1831 17 6 10.9786 -3.5890 -9.0485 18 1 11.4263 -3.2264 -8.1351 19 6 11.7793 -4.0026 -10.0919 20 7 11.2341 -4.4438 -11.2045 21 14 13.6387 -3.9364 -9.9254 22 1 13.9971 -3.4047 -8.5860 23 1 14.1988 -5.3029 -10.0821 24 1 14.1984 -3.0486 -10.9760 25 6 2.7715 -0.2558 -3.8939 26 6 2.4261 0.2375 -2.6495 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6380 -0.8057 29 1 -0.3634 0.3787 0.9554 30 1 2.3017 -2.6641 -0.9340 31 1 2.9069 -3.5437 -3.1528 32 1 2.9129 -3.1574 -5.5499 33 1 2.9130 -1.5027 -6.2058 34 1 5.3360 -1.9073 -4.8125 35 1 7.2477 -2.4011 -6.0579 36 1 6.9975 -4.2135 -8.2092 37 1 6.9968 -2.5594 -8.8668 38 1 9.1448 -2.1015 -7.7150 39 1 9.1448 -3.7557 -7.0576 40 1 9.1662 -4.6707 -9.3624 41 1 9.1661 -3.0163 -10.0192 42 1 11.7974 -4.7351 -11.9384 43 1 2.9063 0.4211 -4.7246 44 1 2.2917 1.2997 -2.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171735278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -84.953283 kcal Electronic energy + Delta-G solvation = -25339.632453 eV Core-core repulsion = 21384.073026 eV Total energy + Delta-G solvation = -3955.559427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31906 -39.50054 -37.63170 -36.47317 -35.80815 -34.92068 -33.34467 -32.14490 -31.63811 -30.95309 -30.12069 -27.36023 -26.01530 -23.46429 -23.14552 -22.22179 -20.91768 -20.42257 -19.61671 -18.50918 -18.15161 -16.80128 -16.70841 -16.68268 -16.12852 -15.82716 -15.63935 -15.33920 -15.00006 -14.54679 -14.28143 -14.26451 -14.06011 -14.00714 -13.83503 -13.82304 -13.37360 -12.97598 -12.59858 -12.50775 -12.45520 -12.29162 -11.81380 -11.81211 -11.66793 -11.66192 -11.16831 -10.92399 -10.74047 -10.57265 -10.29786 -9.87232 -9.81425 -9.61035 -9.44472 -9.32985 -9.11553 -8.66215 -8.37797 -6.02261 -4.05285 -0.52857 0.15755 0.73468 2.28425 2.58493 3.05549 3.29080 3.29816 3.37388 3.39415 3.41044 3.54341 4.06800 4.11422 4.15811 4.33516 4.34087 4.36363 4.45320 4.74487 4.78763 5.00994 5.07769 5.11879 5.33673 5.34611 5.40841 5.49667 5.54944 5.68738 5.79779 5.91630 6.16034 6.22513 6.28278 6.49388 6.61010 6.75908 6.99909 7.01591 7.63590 7.75948 7.96668 8.07067 8.37582 8.67142 9.01636 9.59026 11.09021 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.001488 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.396301 B =18807.349093 C =19509.426836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.500 3.500 3 O -0.936 6.936 4 O -0.936 6.936 5 C -0.657 4.657 6 C -0.026 4.026 7 C -0.120 4.120 8 C -0.050 4.050 9 C 0.173 3.827 10 N -0.749 5.749 11 C 0.701 3.299 12 O -0.592 6.592 13 N -0.740 5.740 14 C 0.135 3.865 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.120 4.120 26 C -0.026 4.026 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.137 0.863 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.450 9.479 23.897 36.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.679 3.321 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.744 4.744 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.050 4.050 9 C 0.049 3.951 10 N -0.406 5.406 11 C 0.401 3.599 12 O -0.470 6.470 13 N -0.394 5.394 14 C 0.012 3.988 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.139 4.139 26 C -0.045 4.045 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.155 0.845 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.482 9.301 23.448 36.574 hybrid contribution 1.099 -0.030 -0.077 1.102 sum -25.383 9.272 23.371 35.727 Atomic orbital electron populations 1.30224 1.25571 1.12181 1.11980 1.05189 0.77894 0.74672 0.74307 1.93602 1.77295 1.36461 1.86008 1.93601 1.77297 1.61634 1.60836 1.30592 1.18610 1.03088 1.22066 1.20978 0.92537 0.93193 0.97773 1.21306 0.99867 1.00548 0.92221 1.20327 0.95445 0.93917 0.95351 1.20082 0.80553 1.02025 0.92420 1.45081 1.06500 1.71696 1.17371 1.15980 0.82676 0.78707 0.82531 1.90931 1.62027 1.54937 1.39093 1.45394 1.04283 1.69755 1.19974 1.21536 0.93968 0.99129 0.84200 1.21896 0.90792 1.01068 1.02112 1.19037 0.95000 0.96622 0.90778 1.21245 0.91440 1.42906 1.00458 0.92589 1.25031 0.98806 0.95291 0.95341 1.69973 1.35171 1.43408 1.04686 0.86527 0.85669 0.77668 0.78058 1.19775 1.21001 1.21007 1.21303 0.99848 0.94969 0.97823 1.20976 0.92548 0.99585 0.91370 0.84895 0.84896 0.84922 0.83827 0.84528 0.90241 0.90247 0.76963 0.77224 0.91900 0.91890 0.92744 0.92739 0.96221 0.96216 0.92985 0.84530 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.71 10.80 101.05 1.09 0.38 16 2 S 2.50 12.90 5.80 -107.50 -0.62 12.28 16 3 O -0.94 -8.01 17.13 -57.54 -0.99 -9.00 16 4 O -0.94 -8.01 17.12 -57.54 -0.98 -9.00 16 5 C -0.66 -3.88 5.66 -39.58 -0.22 -4.11 16 6 C -0.03 -0.16 9.47 -39.58 -0.37 -0.53 16 7 C -0.12 -0.76 9.70 -39.58 -0.38 -1.14 16 8 C -0.05 -0.34 5.25 -104.62 -0.55 -0.89 16 9 C 0.17 1.49 5.80 -5.19 -0.03 1.46 16 10 N -0.75 -7.59 5.55 -66.41 -0.37 -7.96 16 11 C 0.70 10.29 8.57 -86.91 -0.74 9.55 16 12 O -0.59 -11.22 16.34 5.29 0.09 -11.14 16 13 N -0.74 -10.51 5.56 -65.22 -0.36 -10.87 16 14 C 0.13 2.37 5.67 -4.04 -0.02 2.35 16 15 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.12 -0.76 9.70 -39.58 -0.38 -1.14 16 26 C -0.03 -0.16 9.47 -39.58 -0.37 -0.53 16 27 H 0.13 -0.03 8.14 -51.92 -0.42 -0.46 16 28 H 0.13 -0.03 8.14 -51.92 -0.42 -0.46 16 29 H 0.13 -0.01 8.14 -51.92 -0.42 -0.43 16 30 H 0.14 0.64 7.56 -52.49 -0.40 0.24 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.08 0.71 8.09 -51.92 -0.42 0.29 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.40 3.14 8.48 -40.82 -0.35 2.79 16 35 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.63 7.57 -52.49 -0.40 0.24 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -39.07 390.26 -10.85 -49.92 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.52 Total: -0.55 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.69 Total: -10.01 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.01 Total: -44.87 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.88 Total: -29.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 12.90 SS G_CDS: -0.62 Total: 12.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.07 -10.85 -49.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171735278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.033 kcal (2) G-P(sol) polarization free energy of solvation -39.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds