Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 109.46903 * 2 1 4 4 C 1.81399 * 102.99806 * 116.38338 * 2 1 3 5 5 C 1.53004 * 109.46957 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46977 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00308 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99674 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46648 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.92995 * 269.72397 * 12 11 10 14 14 C 1.38102 * 120.06507 * 179.73008 * 13 12 11 15 15 C 1.38880 * 119.93088 * 0.56678 * 14 13 12 16 16 O 1.35748 * 120.06658 * 179.68453 * 15 14 13 17 17 C 1.34827 * 117.00066 * 174.48645 * 16 15 14 18 18 H 1.08001 * 119.99955 * 5.05588 * 17 16 15 19 19 C 1.38648 * 120.00303 * 185.05484 * 17 16 15 20 20 N 1.31556 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47499 * 90.00304 * 21 19 17 23 23 H 1.48505 * 109.47388 * 210.00145 * 21 19 17 24 24 H 1.48502 * 109.47493 * 330.00120 * 21 19 17 25 25 C 1.38876 * 119.86182 * 359.70735 * 15 14 13 26 26 C 1.38095 * 119.93087 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47367 * 63.61090 * 1 2 3 28 28 H 1.09000 * 109.47498 * 303.61223 * 1 2 3 29 29 H 1.08995 * 109.47357 * 183.61361 * 1 2 3 30 30 H 1.08993 * 109.47608 * 300.00024 * 4 2 1 31 31 H 1.09001 * 109.46824 * 60.00299 * 4 2 1 32 32 H 1.09002 * 109.46963 * 300.00203 * 5 4 2 33 33 H 1.08999 * 109.47250 * 59.99639 * 5 4 2 34 34 H 1.09002 * 109.47003 * 299.99644 * 6 5 4 35 35 H 1.08993 * 109.47353 * 60.00196 * 6 5 4 36 36 H 0.97000 * 119.99768 * 359.97438 * 7 6 5 37 37 H 0.96993 * 119.99652 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.47288 * 299.99129 * 11 10 8 39 39 H 1.08996 * 109.47433 * 59.99814 * 11 10 8 40 40 H 1.07997 * 119.96512 * 359.97438 * 13 12 11 41 41 H 1.08002 * 120.02779 * 180.27467 * 14 13 12 42 42 H 0.97004 * 120.00250 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03588 * 179.97438 * 25 15 14 44 44 H 1.08001 * 119.96562 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7854 1.5834 5 6 3.7423 -0.8615 1.7382 6 6 4.0864 -1.5245 3.0734 7 7 5.5421 -1.5979 3.2213 8 6 6.0802 -2.1470 4.3283 9 8 5.3574 -2.5811 5.2044 10 7 7.4194 -2.2141 4.4646 11 6 8.0041 -2.8104 5.6681 12 6 9.5074 -2.7631 5.5725 13 6 10.1961 -3.8180 5.0018 14 6 11.5732 -3.7751 4.9076 15 6 12.2674 -2.6765 5.3975 16 8 13.6215 -2.6343 5.3122 17 6 14.2241 -1.4927 5.7014 18 1 13.6403 -0.6953 6.1369 19 6 15.5933 -1.3425 5.5427 20 7 16.3044 -2.3137 5.0118 21 14 16.4282 0.2389 6.0826 22 1 16.8569 0.1138 7.4988 23 1 17.6155 0.4892 5.2264 24 1 15.4762 1.3710 5.9518 25 6 11.5733 -1.6214 5.9752 26 6 10.1959 -1.6678 6.0614 27 1 -0.3634 0.4568 -0.9206 28 1 -0.3634 0.5689 0.8558 29 1 -0.3634 -1.0256 0.0648 30 1 1.8031 -0.1969 2.3996 31 1 1.8031 -1.7914 1.6085 32 1 4.1616 -1.4498 0.9220 33 1 4.1608 0.1446 1.7131 34 1 3.6671 -0.9365 3.8898 35 1 3.6680 -2.5306 3.0980 36 1 6.1187 -1.2513 2.5225 37 1 7.9959 -1.8674 3.7658 38 1 7.6779 -2.2521 6.5457 39 1 7.6784 -3.8469 5.7551 40 1 9.6561 -4.6743 4.6257 41 1 12.1101 -4.5972 4.4578 42 1 17.2623 -2.2087 4.9010 43 1 12.1103 -0.7659 6.3574 44 1 9.6555 -0.8474 6.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172066524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = -76.179163 kcal Electronic energy + Delta-G solvation = -25126.101637 eV Core-core repulsion = 21170.922684 eV Total energy + Delta-G solvation = -3955.178953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00582 -39.09032 -37.00681 -36.20769 -36.03211 -34.32592 -32.93004 -32.33842 -30.28953 -29.86089 -29.47824 -26.84296 -25.67001 -24.43960 -22.21943 -22.05547 -20.94151 -20.62120 -18.42216 -18.06441 -17.98703 -17.08005 -16.59814 -16.36569 -15.59833 -15.42924 -15.20508 -14.81565 -14.68867 -14.48930 -14.36945 -14.21591 -13.88617 -13.70470 -13.45522 -13.32430 -13.18074 -12.79304 -12.75551 -12.68664 -12.42779 -12.10500 -12.00262 -11.69352 -11.41737 -11.39666 -10.97002 -10.79500 -10.68765 -10.63702 -10.49516 -10.19844 -9.43386 -9.33391 -8.91883 -8.77504 -8.75696 -8.28816 -7.33691 -6.53540 -4.12470 0.98375 2.02271 2.09515 2.12785 2.82798 3.08618 3.09432 3.14072 3.23917 3.29480 3.90018 4.18120 4.34576 4.47489 4.53413 4.57978 4.63164 4.69909 4.98087 5.01521 5.14183 5.15904 5.23803 5.32324 5.37949 5.44612 5.60840 5.65681 5.67189 5.82042 5.93359 6.11893 6.32572 6.35136 6.57253 6.61306 6.79869 6.87843 6.98727 7.15343 7.27640 7.34817 7.71135 7.91156 8.03508 8.61660 8.91869 9.59902 10.63926 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.001524 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.502993 B =18370.632398 C =19334.542430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.247 4.753 3 O -0.851 6.851 4 C -0.446 4.446 5 C -0.113 4.113 6 C 0.145 3.855 7 N -0.752 5.752 8 C 0.701 3.299 9 O -0.598 6.598 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.215 4.215 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.174 6.174 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.890 0.177 -11.082 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 1.445 4.555 3 O -0.846 6.846 4 C -0.584 4.584 5 C -0.152 4.152 6 C 0.019 3.981 7 N -0.409 5.409 8 C 0.401 3.599 9 O -0.477 6.477 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.216 4.216 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.256 4.256 26 C -0.069 4.069 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.531 -0.071 -11.069 28.747 hybrid contribution 0.033 2.306 1.482 2.741 sum -26.498 2.235 -9.587 28.267 Atomic orbital electron populations 1.27651 1.21773 1.08118 1.07336 1.70566 0.86389 0.99108 0.99480 1.93159 1.73344 1.36740 1.81365 1.27616 1.01751 1.10658 1.18344 1.21361 0.93160 1.02363 0.98310 1.21124 0.79512 1.00982 0.96462 1.45127 1.07606 1.66562 1.21597 1.16018 0.82613 0.78990 0.82313 1.90907 1.60367 1.54383 1.42040 1.45512 1.04372 1.65591 1.23775 1.19829 0.89035 0.97788 0.85840 1.19228 0.93324 0.97872 1.11184 1.20537 0.93035 0.96928 0.96730 1.20218 0.93435 0.99349 1.08487 1.19442 0.84841 0.93225 0.91922 1.83976 1.13262 1.37373 1.72999 1.21355 0.91301 0.92830 1.41491 0.88925 1.25310 0.95440 0.99200 0.96467 1.70035 1.07405 1.31748 1.40149 0.85698 0.78983 0.79965 0.78718 1.19793 1.20178 1.19152 1.21158 0.94231 1.01467 1.08792 1.20650 0.93560 0.96153 0.96523 0.87587 0.90137 0.86832 0.89311 0.86008 0.89829 0.90688 0.91922 0.91341 0.76961 0.76845 0.91825 0.91715 0.86920 0.86371 0.91881 0.85441 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.41 10.74 101.05 1.09 -0.32 16 2 S 1.25 4.54 13.80 -107.50 -1.48 3.05 16 3 O -0.85 -9.66 18.14 -35.23 -0.64 -10.30 16 4 C -0.45 -1.71 5.92 37.16 0.22 -1.49 16 5 C -0.11 -0.60 5.34 -26.73 -0.14 -0.74 16 6 C 0.14 1.19 5.67 -4.04 -0.02 1.17 16 7 N -0.75 -7.18 5.56 -65.23 -0.36 -7.54 16 8 C 0.70 9.45 8.57 -86.91 -0.74 8.70 16 9 O -0.60 -10.44 16.34 5.29 0.09 -10.36 16 10 N -0.74 -9.27 5.55 -66.41 -0.37 -9.64 16 11 C 0.20 2.80 5.80 -5.19 -0.03 2.77 16 12 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 14 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.17 -4.80 9.76 0.06 0.00 -4.80 16 17 C -0.39 -10.68 9.49 30.88 0.29 -10.39 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 21 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 27 H 0.11 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.12 0.15 8.14 -51.92 -0.42 -0.28 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.76 8.49 -40.82 -0.35 2.41 16 37 H 0.40 4.34 8.48 -40.82 -0.35 4.00 16 38 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -38.61 390.89 -9.22 -47.83 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.31 Total: 6.60 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.77 Total: -11.91 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.03 Total: -41.00 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.55 Total: -25.45 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.48 Total: 3.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.61 -9.22 -47.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172066524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.349 kcal (2) G-P(sol) polarization free energy of solvation -38.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds