Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 109.46903 * 2 1 4 4 C 1.81399 * 102.99806 * 116.38338 * 2 1 3 5 5 C 1.53004 * 109.46957 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46977 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00308 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00135 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99674 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46648 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.92995 * 269.72397 * 12 11 10 14 14 C 1.38102 * 120.06507 * 179.73008 * 13 12 11 15 15 C 1.38880 * 119.93088 * 0.56678 * 14 13 12 16 16 O 1.35748 * 120.06658 * 179.68453 * 15 14 13 17 17 C 1.34827 * 117.00066 * 174.48645 * 16 15 14 18 18 H 1.08001 * 119.99955 * 5.05588 * 17 16 15 19 19 C 1.38648 * 120.00303 * 185.05484 * 17 16 15 20 20 N 1.31556 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47499 * 90.00304 * 21 19 17 23 23 H 1.48505 * 109.47388 * 210.00145 * 21 19 17 24 24 H 1.48502 * 109.47493 * 330.00120 * 21 19 17 25 25 C 1.38876 * 119.86182 * 359.70735 * 15 14 13 26 26 C 1.38095 * 119.93087 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47367 * 63.61090 * 1 2 3 28 28 H 1.09000 * 109.47498 * 303.61223 * 1 2 3 29 29 H 1.08995 * 109.47357 * 183.61361 * 1 2 3 30 30 H 1.08993 * 109.47608 * 300.00024 * 4 2 1 31 31 H 1.09001 * 109.46824 * 60.00299 * 4 2 1 32 32 H 1.09002 * 109.46963 * 300.00203 * 5 4 2 33 33 H 1.08999 * 109.47250 * 59.99639 * 5 4 2 34 34 H 1.09002 * 109.47003 * 299.99644 * 6 5 4 35 35 H 1.08993 * 109.47353 * 60.00196 * 6 5 4 36 36 H 0.97000 * 119.99768 * 359.97438 * 7 6 5 37 37 H 0.96993 * 119.99652 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.47288 * 299.99129 * 11 10 8 39 39 H 1.08996 * 109.47433 * 59.99814 * 11 10 8 40 40 H 1.07997 * 119.96512 * 359.97438 * 13 12 11 41 41 H 1.08002 * 120.02779 * 180.27467 * 14 13 12 42 42 H 0.97004 * 120.00250 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03588 * 179.97438 * 25 15 14 44 44 H 1.08001 * 119.96562 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7854 1.5834 5 6 3.7423 -0.8615 1.7382 6 6 4.0864 -1.5245 3.0734 7 7 5.5421 -1.5979 3.2213 8 6 6.0802 -2.1470 4.3283 9 8 5.3574 -2.5811 5.2044 10 7 7.4194 -2.2141 4.4646 11 6 8.0041 -2.8104 5.6681 12 6 9.5074 -2.7631 5.5725 13 6 10.1961 -3.8180 5.0018 14 6 11.5732 -3.7751 4.9076 15 6 12.2674 -2.6765 5.3975 16 8 13.6215 -2.6343 5.3122 17 6 14.2241 -1.4927 5.7014 18 1 13.6403 -0.6953 6.1369 19 6 15.5933 -1.3425 5.5427 20 7 16.3044 -2.3137 5.0118 21 14 16.4282 0.2389 6.0826 22 1 16.8569 0.1138 7.4988 23 1 17.6155 0.4892 5.2264 24 1 15.4762 1.3710 5.9518 25 6 11.5733 -1.6214 5.9752 26 6 10.1959 -1.6678 6.0614 27 1 -0.3634 0.4568 -0.9206 28 1 -0.3634 0.5689 0.8558 29 1 -0.3634 -1.0256 0.0648 30 1 1.8031 -0.1969 2.3996 31 1 1.8031 -1.7914 1.6085 32 1 4.1616 -1.4498 0.9220 33 1 4.1608 0.1446 1.7131 34 1 3.6671 -0.9365 3.8898 35 1 3.6680 -2.5306 3.0980 36 1 6.1187 -1.2513 2.5225 37 1 7.9959 -1.8674 3.7658 38 1 7.6779 -2.2521 6.5457 39 1 7.6784 -3.8469 5.7551 40 1 9.6561 -4.6743 4.6257 41 1 12.1101 -4.5972 4.4578 42 1 17.2623 -2.2087 4.9010 43 1 12.1103 -0.7659 6.3574 44 1 9.6555 -0.8474 6.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172066524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = -106.874603 kcal Electronic energy + Delta-G solvation = -25127.432692 eV Core-core repulsion = 21170.922684 eV Total energy + Delta-G solvation = -3956.510007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14036 -40.66152 -38.56619 -36.92780 -36.74689 -35.57801 -34.29304 -33.58602 -31.83128 -31.22601 -29.75994 -27.90084 -27.21511 -25.72491 -23.63799 -22.76728 -22.19946 -21.88855 -19.88560 -19.41058 -18.80860 -18.39491 -17.51799 -17.03283 -16.51705 -16.40004 -16.20687 -16.00791 -15.98883 -15.63530 -15.53244 -15.27975 -15.09099 -14.89128 -14.71295 -14.37484 -14.24185 -13.77076 -13.67693 -13.57997 -13.27820 -13.13840 -13.02069 -12.92332 -12.55505 -12.49481 -12.36111 -12.21696 -12.11893 -11.88250 -11.43986 -11.19890 -11.08759 -10.80541 -10.35415 -9.81414 -9.71379 -9.16906 -9.01428 -8.48205 -6.16414 0.52921 0.58554 0.66913 1.35906 1.43671 1.52598 1.80562 1.86909 2.17035 2.18429 2.80760 2.92151 3.13909 3.46407 3.49121 3.88904 3.95192 4.02615 4.04240 4.05980 4.18244 4.30541 4.47057 4.49025 4.55665 4.57698 4.67310 4.75065 4.81893 4.89311 5.05034 5.09303 5.14822 5.17219 5.19113 5.27390 5.48101 5.53375 5.54828 5.69650 5.76479 6.01654 6.04163 6.17138 6.96708 7.11848 7.60457 7.75807 8.74469 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.001524 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.502993 B =18370.632398 C =19334.542430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.298 4.702 3 O -0.933 6.933 4 C -0.445 4.445 5 C -0.110 4.110 6 C 0.143 3.857 7 N -0.738 5.738 8 C 0.699 3.301 9 O -0.639 6.639 10 N -0.731 5.731 11 C 0.204 3.796 12 C -0.181 4.181 13 C -0.041 4.041 14 C -0.203 4.203 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.020 4.020 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.244 4.244 26 C -0.046 4.046 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.411 0.589 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.273 0.727 43 H 0.119 0.881 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.048 0.022 -11.671 32.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.498 4.502 3 O -0.929 6.929 4 C -0.583 4.583 5 C -0.149 4.149 6 C 0.018 3.982 7 N -0.395 5.395 8 C 0.398 3.602 9 O -0.521 6.521 10 N -0.387 5.387 11 C 0.080 3.920 12 C -0.183 4.183 13 C -0.060 4.060 14 C -0.223 4.223 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.218 4.218 20 N -0.555 5.555 21 Si 0.836 3.164 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.264 4.264 26 C -0.065 4.065 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.247 0.753 37 H 0.244 0.756 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -29.736 -0.200 -11.703 31.957 hybrid contribution 0.526 2.195 1.663 2.804 sum -29.210 1.995 -10.040 30.952 Atomic orbital electron populations 1.27639 1.20131 1.10207 1.06843 1.69640 0.86221 0.95944 0.98354 1.93024 1.76054 1.40591 1.83189 1.27625 1.00927 1.12347 1.17353 1.21363 0.94231 1.01560 0.97739 1.21233 0.78464 1.01187 0.97327 1.45058 1.08488 1.65183 1.20751 1.16140 0.82411 0.78927 0.82683 1.90886 1.61238 1.56244 1.43707 1.45246 1.04405 1.65486 1.23523 1.19708 0.87105 0.98540 0.86611 1.19495 0.94517 0.96462 1.07786 1.20891 0.91563 0.98106 0.95398 1.20462 0.94890 0.98534 1.08367 1.20004 0.84030 0.95224 0.93607 1.83944 1.15499 1.38196 1.75878 1.21818 0.92053 0.93336 1.41821 0.88002 1.26545 0.95864 1.02942 0.96436 1.70174 1.07735 1.34461 1.43164 0.84609 0.77840 0.75496 0.78435 1.18918 1.19610 1.17715 1.21230 0.95668 1.00661 1.08796 1.20928 0.92162 0.97432 0.95951 0.87236 0.91717 0.83360 0.90928 0.82455 0.86702 0.92496 0.93962 0.90821 0.75256 0.75642 0.91747 0.90978 0.83264 0.86525 0.91799 0.86324 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.66 10.74 113.37 1.22 -0.44 16 2 S 1.30 7.36 13.80 -56.49 -0.78 6.58 16 3 O -0.93 -21.35 18.14 -148.98 -2.70 -24.05 16 4 C -0.44 -2.33 5.92 71.98 0.43 -1.91 16 5 C -0.11 -0.91 5.34 30.59 0.16 -0.75 16 6 C 0.14 2.04 5.67 86.38 0.49 2.53 16 7 N -0.74 -12.13 5.56 -478.54 -2.66 -14.79 16 8 C 0.70 16.92 8.57 179.05 1.53 18.46 16 9 O -0.64 -20.94 16.34 -3.99 -0.07 -21.00 16 10 N -0.73 -15.86 5.55 -482.28 -2.68 -18.54 16 11 C 0.20 5.01 5.80 85.64 0.50 5.50 16 12 C -0.18 -5.18 5.25 -19.83 -0.10 -5.29 16 13 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 14 C -0.20 -8.04 9.99 22.39 0.22 -7.82 16 15 C 0.12 5.80 6.65 22.58 0.15 5.95 16 16 O -0.23 -13.38 9.76 -22.69 -0.22 -13.60 16 17 C -0.41 -23.52 9.49 67.92 0.64 -22.88 16 18 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 19 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 20 N -0.92 -55.23 13.67 21.61 0.30 -54.93 16 21 Si 1.02 42.04 29.55 68.60 2.03 44.06 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 25 C -0.24 -10.08 9.17 22.39 0.21 -9.87 16 26 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.15 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.41 4.46 8.49 -92.71 -0.79 3.67 16 37 H 0.41 7.38 8.48 -92.71 -0.79 6.59 16 38 H 0.06 1.65 8.09 -2.38 -0.02 1.63 16 39 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 43 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -90.41 390.89 -0.98 -91.39 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.54 Total: 24.34 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 6.34 Total: -19.46 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -5.04 Total: -88.26 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -2.99 Total: -58.66 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -0.78 Total: 6.58 kcal Total: -90.41 -0.98 -91.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172066524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.488 kcal (2) G-P(sol) polarization free energy of solvation -90.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds