Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00322 * 2 1 4 4 C 1.46907 * 110.99809 * 123.96138 * 2 1 3 5 5 C 1.50702 * 109.46818 * 169.99975 * 4 2 1 6 6 C 1.38234 * 120.00257 * 89.99881 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4 8 8 C 1.38228 * 120.00114 * 359.50218 * 7 6 5 9 9 S 1.76205 * 120.00116 * 180.26456 * 8 7 6 10 10 O 1.42094 * 106.39919 * 23.74624 * 9 8 7 11 11 O 1.42101 * 106.40211 * 156.67103 * 9 8 7 12 12 N 1.65603 * 107.21426 * 270.20933 * 9 8 7 13 13 C 1.47064 * 136.06082 * 269.62439 * 12 9 8 14 14 C 1.53236 * 88.08642 * 207.20606 * 13 12 9 15 15 O 1.42903 * 114.19441 * 87.72570 * 14 13 12 16 16 C 1.50697 * 114.32715 * 220.46734 * 14 13 12 17 17 H 1.08003 * 119.99936 * 93.76279 * 16 14 13 18 18 C 1.37873 * 120.00465 * 273.76031 * 16 14 13 19 19 N 1.31517 * 119.99708 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00306 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47056 * 60.00544 * 20 18 16 22 22 H 1.48504 * 109.47146 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47348 * 300.00005 * 20 18 16 24 24 C 1.47068 * 136.05443 * 90.00072 * 12 9 8 25 25 C 1.38234 * 120.00051 * 0.47390 * 8 7 6 26 26 C 1.38235 * 119.99522 * 269.96894 * 5 4 2 27 27 H 1.09001 * 109.46839 * 296.04603 * 1 2 3 28 28 H 1.08996 * 109.47619 * 56.04241 * 1 2 3 29 29 H 1.09000 * 109.47546 * 176.04840 * 1 2 3 30 30 H 1.09002 * 109.47041 * 183.95221 * 3 2 1 31 31 H 1.09002 * 109.47239 * 303.95971 * 3 2 1 32 32 H 1.09000 * 109.46861 * 63.95596 * 3 2 1 33 33 H 1.08993 * 109.47718 * 49.99421 * 4 2 1 34 34 H 1.08998 * 109.46552 * 289.99242 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97115 * 6 5 4 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.08998 * 113.46597 * 321.94645 * 13 12 9 38 38 H 1.09001 * 113.46691 * 92.37862 * 13 12 9 39 39 H 0.96700 * 113.99879 * 86.30526 * 15 14 13 40 40 H 0.96999 * 120.00407 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.46985 * 267.61819 * 24 12 9 42 42 H 1.08995 * 113.46804 * 38.00379 * 24 12 9 43 43 H 1.08001 * 120.00294 * 179.78842 * 25 8 7 44 44 H 1.07996 * 120.00471 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7662 1.1376 5 6 3.4817 -0.9527 0.9728 6 6 4.3575 -0.0188 1.4940 7 6 5.7207 -0.1872 1.3381 8 6 6.2084 -1.2947 0.6701 9 16 7.9462 -1.5130 0.4775 10 8 8.5617 -0.7752 1.5244 11 8 8.1564 -2.9043 0.2794 12 7 8.3799 -0.7686 -0.9368 13 6 8.4981 -1.1636 -2.3484 14 6 9.5614 -0.0722 -2.5115 15 8 10.8905 -0.4992 -2.2065 16 6 9.4652 0.7003 -3.8018 17 1 8.9105 1.6263 -3.8367 18 6 10.0854 0.2250 -4.9378 19 7 10.7613 -0.9023 -4.8952 20 14 9.9656 1.1823 -6.5374 21 1 10.5489 2.5350 -6.3496 22 1 10.7134 0.4646 -7.6009 23 1 8.5399 1.3085 -6.9332 24 6 8.8228 0.5768 -1.3327 25 6 5.3326 -2.2289 0.1493 26 6 3.9692 -2.0580 0.3009 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8523 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0828 1.3431 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8722 0.9233 33 1 1.5089 -1.7408 1.1756 34 1 1.7975 -0.2249 2.0627 35 1 3.9765 0.8448 2.0189 36 1 6.4048 0.5447 1.7415 37 1 8.8885 -2.1719 -2.4858 38 1 7.5938 -0.9786 -2.9281 39 1 11.3530 -0.9076 -2.9511 40 1 11.1973 -1.2370 -5.6944 41 1 8.0058 1.2301 -1.6391 42 1 9.4879 1.0457 -0.6077 43 1 5.7135 -3.0925 -0.3756 44 1 3.2850 -2.7877 -0.1062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358915321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -45.558797 kcal Electronic energy + Delta-G solvation = -27722.060386 eV Core-core repulsion = 23768.209231 eV Total energy + Delta-G solvation = -3953.851154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.73093 -38.63012 -37.31364 -36.75947 -35.39726 -33.94529 -32.14732 -32.12073 -31.14858 -27.92002 -27.86181 -27.25824 -25.07800 -24.68645 -23.15624 -22.84419 -21.25139 -19.69792 -18.63258 -17.56380 -17.39235 -16.53884 -16.15321 -16.01523 -15.83898 -15.42173 -15.09174 -14.68452 -14.61239 -14.26826 -14.11038 -13.65370 -13.59726 -13.21219 -13.04567 -12.88063 -12.73378 -12.53447 -12.10594 -12.09773 -11.96314 -11.76808 -11.67407 -11.64995 -11.62916 -11.47315 -11.22115 -11.03935 -10.82174 -10.57996 -10.46903 -10.20722 -9.38359 -9.24505 -9.07742 -8.75646 -8.72592 -8.52247 -8.04339 -6.34799 -4.45423 0.61326 0.91773 1.25377 3.16978 3.18882 3.25067 3.26912 3.53634 3.83900 4.19768 4.24832 4.40457 4.45680 4.62431 4.79835 4.84149 4.89172 4.96552 5.00766 5.11071 5.22313 5.25335 5.31099 5.45139 5.48760 5.49845 5.64651 5.67315 5.85863 6.03325 6.04908 6.06595 6.11744 6.29700 6.37334 6.41705 6.57436 6.62318 6.70888 6.77752 6.82438 7.04426 7.51498 7.69581 7.87513 8.57456 9.25159 9.57501 10.71620 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003391 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.547128 B = 8254.316789 C = 9812.368410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.088 3.912 5 C -0.034 4.034 6 C -0.138 4.138 7 C -0.020 4.020 8 C -0.674 4.674 9 S 2.708 3.292 10 O -0.963 6.963 11 O -0.960 6.960 12 N -1.030 6.030 13 C 0.101 3.899 14 C 0.245 3.755 15 O -0.571 6.571 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.129 3.871 25 C -0.019 4.019 26 C -0.121 4.121 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.394 0.606 40 H 0.275 0.725 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 1.455 8.785 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.131 4.131 4 C -0.039 4.039 5 C -0.034 4.034 6 C -0.158 4.158 7 C -0.040 4.040 8 C -0.759 4.759 9 S 2.800 3.200 10 O -0.954 6.954 11 O -0.951 6.951 12 N -0.870 5.870 13 C -0.025 4.025 14 C 0.201 3.799 15 O -0.385 6.385 16 C -0.573 4.573 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.004 3.996 25 C -0.038 4.038 26 C -0.141 4.141 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.157 0.843 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.318 0.766 9.635 19.833 hybrid contribution -1.190 0.778 -0.776 1.619 sum -18.508 1.544 8.860 20.578 Atomic orbital electron populations 1.22402 0.86828 1.02445 1.00671 1.61960 1.07887 1.14398 1.42289 1.22526 1.01879 0.88180 1.00495 1.21165 0.91323 0.99350 0.92095 1.19952 0.94765 0.93995 0.94737 1.21123 0.93229 0.99455 1.01949 1.20886 0.95914 0.94508 0.92652 1.31522 1.28274 1.04108 1.12003 1.01480 0.73215 0.73206 0.72141 1.93526 1.74300 1.73400 1.54127 1.93537 1.84981 1.30806 1.85736 1.59953 1.80117 1.25051 1.21913 1.23688 1.00883 1.02246 0.75634 1.19507 0.80794 0.89294 0.90338 1.86031 1.26847 1.81888 1.43695 1.21445 1.33856 1.08797 0.93153 0.90983 1.25088 0.93864 0.94582 0.99581 1.69264 1.33777 1.20045 1.30631 0.86378 0.78431 0.79931 0.81666 1.19884 1.21035 1.19939 1.22898 0.96628 0.83187 0.96883 1.20961 0.93095 0.96400 0.93331 1.21099 0.95277 0.98160 0.99522 0.95615 0.91029 0.91206 0.90560 0.91112 0.95549 0.89484 0.93518 0.85641 0.84374 0.91327 0.90512 0.74933 0.91500 0.90025 0.91123 0.84261 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.06 0.57 0.74 16 2 N -0.54 -5.01 5.01 -252.73 -1.27 -6.28 16 3 C 0.02 0.15 9.14 60.06 0.55 0.70 16 4 C 0.09 0.77 5.12 -4.97 -0.03 0.75 16 5 C -0.03 -0.38 4.88 -104.62 -0.51 -0.89 16 6 C -0.14 -1.60 7.97 -39.58 -0.32 -1.92 16 7 C -0.02 -0.28 9.52 -39.59 -0.38 -0.66 16 8 C -0.67 -10.58 5.97 -39.59 -0.24 -10.81 16 9 S 2.71 51.48 6.27 -107.50 -0.67 50.80 16 10 O -0.96 -19.99 17.29 -57.17 -0.99 -20.97 16 11 O -0.96 -20.37 17.28 -57.17 -0.99 -21.36 16 12 N -1.03 -20.87 4.24 -125.33 -0.53 -21.40 16 13 C 0.10 2.21 8.14 -8.65 -0.07 2.14 16 14 C 0.25 5.86 1.57 -91.39 -0.14 5.71 16 15 O -0.57 -14.88 13.54 -35.23 -0.48 -15.36 16 16 C -0.53 -13.19 8.69 -34.44 -0.30 -13.49 16 17 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.07 1.77 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -22.87 11.01 55.43 0.61 -22.26 16 20 Si 0.91 19.30 29.54 -169.99 -5.02 14.27 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.13 2.64 8.15 -8.51 -0.07 2.58 16 25 C -0.02 -0.27 9.52 -39.58 -0.38 -0.64 16 26 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.08 0.77 6.17 -51.93 -0.32 0.45 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.66 8.01 -51.93 -0.42 0.25 16 34 H 0.05 0.37 8.06 -51.93 -0.42 -0.05 16 35 H 0.13 1.14 8.03 -52.49 -0.42 0.72 16 36 H 0.14 1.79 7.62 -52.48 -0.40 1.39 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.56 8.10 -51.93 -0.42 1.13 16 39 H 0.39 10.39 6.32 45.56 0.29 10.68 16 40 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.14 1.91 7.62 -52.49 -0.40 1.51 16 44 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -30.51 377.97 -11.27 -41.78 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.85 Total: 11.05 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.78 Total: -15.97 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -1.19 Total: -49.94 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -2.45 Total: -57.70 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 51.48 SS G_CDS: -0.67 Total: 50.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.51 -11.27 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358915321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.774 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds