Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99810 * 2 1 4 4 S 1.65600 * 120.00110 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.39962 * 336.45922 * 4 2 1 6 6 O 1.42100 * 106.40111 * 203.54195 * 4 2 1 7 7 C 1.76199 * 107.21677 * 89.99957 * 4 2 1 8 8 C 1.38253 * 120.00077 * 269.95135 * 7 4 2 9 9 C 1.38204 * 119.99863 * 179.97438 * 8 7 4 10 10 C 1.38261 * 120.00515 * 0.07163 * 9 8 7 11 11 C 1.38208 * 119.99533 * 359.95684 * 10 9 8 12 12 C 1.50701 * 119.99804 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46856 * 270.01572 * 12 11 10 14 14 C 1.34781 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99588 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47048 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00134 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99971 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47080 * 90.00663 * 22 20 18 24 24 H 1.48504 * 109.47165 * 210.00229 * 22 20 18 25 25 H 1.48495 * 109.47434 * 330.00457 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 7 4 2 27 27 H 1.08993 * 109.47137 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47159 * 300.00123 * 1 2 3 29 29 H 1.09005 * 109.47256 * 60.00019 * 1 2 3 30 30 H 1.09004 * 109.47238 * 269.99984 * 3 2 1 31 31 H 1.08996 * 109.47723 * 30.00004 * 3 2 1 32 32 H 1.09003 * 109.47079 * 150.00130 * 3 2 1 33 33 H 1.08005 * 119.99943 * 0.04961 * 8 7 4 34 34 H 1.08004 * 120.00227 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.00025 * 179.97438 * 10 9 8 36 36 H 1.08990 * 109.47415 * 30.02092 * 12 11 10 37 37 H 1.09006 * 109.46768 * 150.01991 * 12 11 10 38 38 H 0.97001 * 120.00118 * 0.02562 * 13 12 11 39 39 H 1.08998 * 109.47013 * 300.00455 * 16 14 13 40 40 H 1.09000 * 109.47137 * 60.00018 * 16 14 13 41 41 H 1.08998 * 109.47673 * 300.00238 * 17 16 14 42 42 H 1.08996 * 109.47006 * 60.00552 * 17 16 14 43 43 H 0.96994 * 119.99950 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.99660 * 0.26988 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 1.6197 -2.6635 -2.3418 9 6 1.8240 -3.0179 -3.6620 10 6 2.9632 -2.5967 -4.3226 11 6 3.8973 -1.8204 -3.6629 12 6 5.1387 -1.3608 -4.3831 13 7 6.2011 -2.3542 -4.2076 14 6 7.4103 -2.1540 -4.7683 15 8 7.6189 -1.1512 -5.4178 16 6 8.5029 -3.1761 -4.5883 17 6 9.7629 -2.7100 -5.3203 18 6 10.8553 -3.7325 -5.1408 19 1 10.6694 -4.6256 -4.5627 20 6 12.0919 -3.5283 -5.7154 21 7 12.3183 -2.4409 -6.4198 22 14 13.4462 -4.7953 -5.4922 23 1 13.3768 -5.7926 -6.5903 24 1 14.7675 -4.1180 -5.5216 25 1 13.2712 -5.4825 -4.1876 26 6 3.6928 -1.4655 -2.3425 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.3791 1.5835 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 0.7297 -2.9926 -1.8259 34 1 1.0941 -3.6246 -4.1775 35 1 3.1230 -2.8740 -5.3540 36 1 4.9211 -1.2452 -5.4448 37 1 5.4639 -0.4048 -3.9726 38 1 6.0341 -3.1564 -3.6884 39 1 8.7208 -3.2918 -3.5266 40 1 8.1774 -4.1320 -4.9985 41 1 9.5447 -2.5947 -6.3820 42 1 10.0886 -1.7541 -4.9104 43 1 13.1883 -2.2970 -6.8237 44 1 4.4249 -0.8629 -1.8256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360715762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -88.590130 kcal Electronic energy + Delta-G solvation = -26459.836726 eV Core-core repulsion = 22504.119593 eV Total energy + Delta-G solvation = -3955.717133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03906 -38.89881 -37.70082 -36.64065 -36.21959 -34.91707 -33.44249 -31.87782 -31.67868 -30.78580 -28.60687 -26.92280 -25.17337 -25.11418 -23.68142 -22.30042 -21.43454 -19.78121 -19.31440 -18.24409 -17.85281 -16.87512 -16.70809 -16.53933 -15.90604 -15.75868 -15.65332 -15.08199 -14.97775 -14.66560 -14.48280 -14.40955 -13.65548 -13.48319 -13.27321 -13.16506 -13.09414 -12.93619 -12.84512 -12.70323 -12.43672 -12.17370 -12.06402 -12.02971 -11.98017 -11.62060 -11.16775 -11.14410 -10.91976 -10.59181 -9.95415 -9.90125 -9.68356 -9.60637 -9.55243 -9.14128 -8.95124 -8.86755 -8.31219 -5.95423 -3.99687 -0.09768 0.38167 0.77046 2.44081 2.97321 3.21941 3.32729 3.34166 3.40220 3.43141 3.70463 3.83466 4.25388 4.28014 4.37322 4.48622 4.54646 4.74853 4.80953 4.87858 4.91938 5.04588 5.08690 5.24925 5.30014 5.34246 5.39530 5.41193 5.44671 5.50782 5.57876 5.76588 5.80904 5.96895 6.03203 6.22821 6.24966 6.35102 6.62009 6.89258 7.74981 7.83151 7.86572 8.07640 8.39181 8.73679 9.08739 9.63789 11.15529 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.002007 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.842930 B =13944.544613 C =14257.526970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.005 6.005 3 C 0.081 3.919 4 S 2.693 3.307 5 O -0.955 6.955 6 O -0.950 6.950 7 C -0.680 4.680 8 C -0.018 4.018 9 C -0.140 4.140 10 C -0.044 4.044 11 C -0.120 4.120 12 C 0.158 3.842 13 N -0.743 5.743 14 C 0.511 3.489 15 O -0.534 6.534 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.003 4.003 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.772 4.415 11.564 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.844 5.844 3 C -0.065 4.065 4 S 2.783 3.217 5 O -0.945 6.945 6 O -0.940 6.940 7 C -0.766 4.766 8 C -0.038 4.038 9 C -0.159 4.159 10 C -0.063 4.063 11 C -0.121 4.121 12 C 0.035 3.965 13 N -0.397 5.397 14 C 0.300 3.700 15 O -0.409 6.409 16 C -0.170 4.170 17 C -0.001 4.001 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.022 4.022 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.233 0.767 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -30.200 4.840 11.701 32.747 hybrid contribution 0.524 -0.951 -0.561 1.222 sum -29.676 3.889 11.141 31.936 Atomic orbital electron populations 1.21605 0.77989 1.03891 1.02562 1.57276 1.15453 1.21763 1.89932 1.21653 0.97460 0.84828 1.02512 1.02020 0.73224 0.72442 0.73991 1.93578 1.66162 1.58413 1.76359 1.93602 1.39854 1.84217 1.76301 1.30974 1.04483 1.14460 1.26719 1.20935 0.96681 0.91778 0.94383 1.21316 0.98372 1.01368 0.94848 1.21513 0.92249 0.92383 1.00160 1.20136 0.97241 1.00150 0.94586 1.20125 0.83787 0.92771 0.99841 1.46301 1.12229 1.24464 1.56755 1.21619 0.82562 0.88285 0.77574 1.90675 1.81181 1.29600 1.39402 1.21879 0.95331 0.96678 1.03112 1.18902 0.88637 0.96743 0.95776 1.21225 0.96702 1.05800 1.32793 0.92588 1.25033 0.98644 0.95524 0.95251 1.69999 1.23043 1.25897 1.33918 0.86578 0.81409 0.81415 0.78458 1.20701 1.21224 1.19878 1.20904 0.93842 0.94050 0.93443 0.89616 0.91419 0.91934 0.92379 0.90304 0.89550 0.84294 0.84710 0.84710 0.90563 0.90568 0.76749 0.90101 0.90208 0.95839 0.95778 0.92959 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.67 59.85 0.64 1.01 16 2 N -1.00 -6.49 3.58 -129.20 -0.46 -6.95 16 3 C 0.08 0.42 10.70 59.85 0.64 1.06 16 4 S 2.69 24.89 5.69 -107.50 -0.61 24.27 16 5 O -0.95 -10.63 15.85 -57.17 -0.91 -11.54 16 6 O -0.95 -11.55 15.88 -57.17 -0.91 -12.46 16 7 C -0.68 -6.04 5.97 -39.58 -0.24 -6.28 16 8 C -0.02 -0.14 9.52 -39.59 -0.38 -0.52 16 9 C -0.14 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.04 -0.36 9.70 -39.58 -0.38 -0.74 16 11 C -0.12 -1.15 5.25 -104.63 -0.55 -1.70 16 12 C 0.16 1.88 5.80 -5.19 -0.03 1.85 16 13 N -0.74 -10.32 5.55 -61.47 -0.34 -10.66 16 14 C 0.51 9.75 7.83 -10.99 -0.09 9.66 16 15 O -0.53 -12.43 15.98 5.55 0.09 -12.34 16 16 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 17 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 18 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.00 -0.02 9.18 -39.58 -0.36 -0.39 16 27 H 0.09 0.37 6.91 -51.93 -0.36 0.01 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 32 H 0.09 0.52 7.02 -51.93 -0.36 0.15 16 33 H 0.14 0.82 7.62 -52.48 -0.40 0.42 16 34 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.40 4.60 8.46 -40.82 -0.35 4.25 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.14 1.32 7.61 -52.49 -0.40 0.92 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -38.42 386.77 -9.90 -48.32 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.47 Total: -1.28 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.83 Total: -13.17 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.07 Total: -44.45 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.73 Total: -36.34 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 24.89 SS G_CDS: -0.61 Total: 24.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.42 -9.90 -48.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360715762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.272 kcal (2) G-P(sol) polarization free energy of solvation -38.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds