Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99810 * 2 1 4 4 S 1.65600 * 120.00110 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.39962 * 336.45922 * 4 2 1 6 6 O 1.42100 * 106.40111 * 203.54195 * 4 2 1 7 7 C 1.76199 * 107.21677 * 89.99957 * 4 2 1 8 8 C 1.38253 * 120.00077 * 269.95135 * 7 4 2 9 9 C 1.38204 * 119.99863 * 179.97438 * 8 7 4 10 10 C 1.38261 * 120.00515 * 0.07163 * 9 8 7 11 11 C 1.38208 * 119.99533 * 359.95684 * 10 9 8 12 12 C 1.50701 * 119.99804 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46856 * 270.01572 * 12 11 10 14 14 C 1.34781 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99588 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47048 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00134 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99971 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47080 * 90.00663 * 22 20 18 24 24 H 1.48504 * 109.47165 * 210.00229 * 22 20 18 25 25 H 1.48495 * 109.47434 * 330.00457 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 7 4 2 27 27 H 1.08993 * 109.47137 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47159 * 300.00123 * 1 2 3 29 29 H 1.09005 * 109.47256 * 60.00019 * 1 2 3 30 30 H 1.09004 * 109.47238 * 269.99984 * 3 2 1 31 31 H 1.08996 * 109.47723 * 30.00004 * 3 2 1 32 32 H 1.09003 * 109.47079 * 150.00130 * 3 2 1 33 33 H 1.08005 * 119.99943 * 0.04961 * 8 7 4 34 34 H 1.08004 * 120.00227 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.00025 * 179.97438 * 10 9 8 36 36 H 1.08990 * 109.47415 * 30.02092 * 12 11 10 37 37 H 1.09006 * 109.46768 * 150.01991 * 12 11 10 38 38 H 0.97001 * 120.00118 * 0.02562 * 13 12 11 39 39 H 1.08998 * 109.47013 * 300.00455 * 16 14 13 40 40 H 1.09000 * 109.47137 * 60.00018 * 16 14 13 41 41 H 1.08998 * 109.47673 * 300.00238 * 17 16 14 42 42 H 1.08996 * 109.47006 * 60.00552 * 17 16 14 43 43 H 0.96994 * 119.99950 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.99660 * 0.26988 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 1.6197 -2.6635 -2.3418 9 6 1.8240 -3.0179 -3.6620 10 6 2.9632 -2.5967 -4.3226 11 6 3.8973 -1.8204 -3.6629 12 6 5.1387 -1.3608 -4.3831 13 7 6.2011 -2.3542 -4.2076 14 6 7.4103 -2.1540 -4.7683 15 8 7.6189 -1.1512 -5.4178 16 6 8.5029 -3.1761 -4.5883 17 6 9.7629 -2.7100 -5.3203 18 6 10.8553 -3.7325 -5.1408 19 1 10.6694 -4.6256 -4.5627 20 6 12.0919 -3.5283 -5.7154 21 7 12.3183 -2.4409 -6.4198 22 14 13.4462 -4.7953 -5.4922 23 1 13.3768 -5.7926 -6.5903 24 1 14.7675 -4.1180 -5.5216 25 1 13.2712 -5.4825 -4.1876 26 6 3.6928 -1.4655 -2.3425 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.3791 1.5835 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 0.7297 -2.9926 -1.8259 34 1 1.0941 -3.6246 -4.1775 35 1 3.1230 -2.8740 -5.3540 36 1 4.9211 -1.2452 -5.4448 37 1 5.4639 -0.4048 -3.9726 38 1 6.0341 -3.1564 -3.6884 39 1 8.7208 -3.2918 -3.5266 40 1 8.1774 -4.1320 -4.9985 41 1 9.5447 -2.5947 -6.3820 42 1 10.0886 -1.7541 -4.9104 43 1 13.1883 -2.2970 -6.8237 44 1 4.4249 -0.8629 -1.8256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360715762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -117.358230 kcal Electronic energy + Delta-G solvation = -26461.084205 eV Core-core repulsion = 22504.119593 eV Total energy + Delta-G solvation = -3956.964611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00856 -40.13930 -38.49983 -37.16534 -36.96520 -36.13648 -35.53090 -33.24700 -32.42666 -32.26096 -28.98150 -28.37917 -26.70365 -25.62755 -24.33099 -23.68080 -22.70385 -21.28283 -20.03068 -19.05722 -18.71060 -18.50975 -17.47206 -17.37747 -17.15201 -16.96702 -16.76419 -16.40980 -16.20847 -15.56386 -15.37546 -15.15465 -14.78979 -14.56139 -14.33702 -14.15386 -14.09564 -13.78043 -13.64324 -13.54035 -13.36186 -13.29687 -13.24788 -13.23228 -12.81094 -12.62278 -12.57649 -12.49555 -12.31648 -11.92421 -11.84653 -11.64509 -11.31350 -10.93291 -10.57131 -10.45509 -10.15353 -10.06496 -10.02569 -8.18298 -6.32124 -0.76632 -0.28445 0.09732 1.41874 1.44585 1.55601 1.68457 1.83287 2.16612 2.42126 2.56167 2.72487 3.11994 3.14566 3.49406 3.74173 3.85007 3.94667 4.05471 4.11990 4.15839 4.35144 4.48540 4.51061 4.54792 4.57085 4.63092 4.70756 4.76306 4.83304 4.94192 4.94686 4.98141 5.03682 5.07391 5.18844 5.32792 5.37340 5.50458 5.52503 5.63271 5.73233 5.85329 6.17635 6.54294 6.86151 7.29398 7.37976 8.94304 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.002007 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.842930 B =13944.544613 C =14257.526970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.002 6.002 3 C 0.073 3.927 4 S 2.704 3.296 5 O -0.977 6.977 6 O -0.986 6.986 7 C -0.682 4.682 8 C -0.019 4.019 9 C -0.134 4.134 10 C -0.043 4.043 11 C -0.127 4.127 12 C 0.159 3.841 13 N -0.718 5.718 14 C 0.514 3.486 15 O -0.585 6.585 16 C -0.121 4.121 17 C 0.042 3.958 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.257 1.257 26 C -0.015 4.015 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.414 0.586 39 H 0.102 0.898 40 H 0.105 0.895 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.834 2.562 12.205 35.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.843 5.843 3 C -0.071 4.071 4 S 2.796 3.204 5 O -0.967 6.967 6 O -0.977 6.977 7 C -0.770 4.770 8 C -0.039 4.039 9 C -0.152 4.152 10 C -0.062 4.062 11 C -0.128 4.128 12 C 0.036 3.964 13 N -0.372 5.372 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.161 4.161 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.181 1.181 26 C -0.034 4.034 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.003 0.997 42 H 0.001 0.999 43 H 0.072 0.928 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.324 2.951 12.397 34.746 hybrid contribution 1.022 -0.317 -0.754 1.309 sum -31.302 2.634 11.643 33.501 Atomic orbital electron populations 1.21860 0.76426 1.04421 1.04197 1.57102 1.16354 1.21021 1.89795 1.21819 0.97287 0.84696 1.03346 1.01413 0.72362 0.72664 0.73988 1.93541 1.66393 1.59675 1.77098 1.93552 1.41837 1.84855 1.77407 1.30873 1.04714 1.15154 1.26287 1.21292 0.96869 0.90833 0.94861 1.21666 0.98332 1.00749 0.94485 1.21739 0.92053 0.91523 1.00889 1.19882 0.96800 1.01620 0.94519 1.20185 0.84011 0.91911 1.00314 1.46018 1.11017 1.25199 1.54978 1.21302 0.83786 0.87194 0.77466 1.90661 1.82298 1.31467 1.42055 1.21651 0.93098 0.97840 1.03474 1.18689 0.91841 0.95042 0.93986 1.21716 0.97250 1.06468 1.32710 0.90715 1.26144 1.01846 0.97829 0.94711 1.70175 1.23898 1.28409 1.35196 0.85314 0.77287 0.78328 0.79259 1.19611 1.21151 1.18085 1.20905 0.94302 0.94581 0.93651 0.89652 0.90131 0.90027 0.91436 0.88058 0.90873 0.82382 0.81597 0.83158 0.90424 0.91365 0.74956 0.88011 0.87650 0.99715 0.99910 0.92843 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.67 127.77 1.36 1.86 16 2 N -1.00 -11.79 3.58 -562.68 -2.02 -13.81 16 3 C 0.07 0.69 10.70 127.77 1.37 2.06 16 4 S 2.70 48.71 5.69 -56.49 -0.32 48.39 16 5 O -0.98 -21.02 15.85 -128.00 -2.03 -23.04 16 6 O -0.99 -24.56 15.88 -128.00 -2.03 -26.59 16 7 C -0.68 -11.26 5.97 22.27 0.13 -11.12 16 8 C -0.02 -0.25 9.52 22.27 0.21 -0.03 16 9 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 10 C -0.04 -0.59 9.70 22.27 0.22 -0.37 16 11 C -0.13 -2.26 5.25 -19.87 -0.10 -2.37 16 12 C 0.16 3.69 5.80 85.63 0.50 4.19 16 13 N -0.72 -19.35 5.55 -466.78 -2.59 -21.94 16 14 C 0.51 19.79 7.83 87.65 0.69 20.47 16 15 O -0.59 -28.42 15.98 -3.05 -0.05 -28.47 16 16 C -0.12 -4.90 5.64 29.84 0.17 -4.73 16 17 C 0.04 2.36 4.26 29.85 0.13 2.49 16 18 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 19 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 20 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 21 N -0.94 -59.80 13.29 21.45 0.28 -59.51 16 22 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 C -0.01 -0.27 9.18 22.27 0.20 -0.06 16 27 H 0.08 0.59 6.91 -2.39 -0.02 0.57 16 28 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 32 H 0.07 0.90 7.02 -2.39 -0.02 0.88 16 33 H 0.16 1.38 7.62 -2.91 -0.02 1.36 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.07 1.72 8.09 -2.38 -0.02 1.70 16 38 H 0.41 8.76 8.46 -92.71 -0.78 7.97 16 39 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 41 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 42 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 43 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.14 2.60 7.61 -2.91 -0.02 2.58 16 Total: -1.00 -86.48 386.77 -0.71 -87.19 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.22 Total: 10.86 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 5.79 Total: -19.86 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.32 Total: -95.26 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -4.11 Total: -78.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 48.71 SS G_CDS: -0.32 Total: 48.39 kcal Total: -86.48 -0.71 -87.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360715762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.170 kcal (2) G-P(sol) polarization free energy of solvation -86.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds