Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00224 * 2 1 4 4 C 1.34785 * 120.00081 * 180.02562 * 2 1 3 5 5 O 1.21280 * 119.99941 * 359.97438 * 4 2 1 6 6 C 1.50697 * 119.99839 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.46717 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47342 * 180.02562 * 7 6 4 9 9 N 1.46494 * 109.47693 * 179.97438 * 8 7 6 10 10 S 1.65597 * 120.00241 * 164.72209 * 9 8 7 11 11 O 1.42103 * 106.40620 * 178.54272 * 10 9 8 12 12 O 1.42100 * 106.40630 * 311.46546 * 10 9 8 13 13 C 1.76208 * 107.21734 * 65.00320 * 10 9 8 14 14 C 1.38632 * 119.74525 * 269.73112 * 13 10 9 15 15 C 1.37628 * 120.24207 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74460 * 0.56531 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68162 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48496 * 109.47170 * 89.99474 * 21 19 17 23 23 H 1.48494 * 109.47127 * 209.99890 * 21 19 17 24 24 H 1.48504 * 109.46764 * 329.99426 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70628 * 16 15 14 26 26 C 1.37620 * 119.73960 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46560 * 269.99884 * 1 2 3 28 28 H 1.08995 * 109.47073 * 30.00025 * 1 2 3 29 29 H 1.09004 * 109.46917 * 150.00292 * 1 2 3 30 30 H 1.09002 * 109.47156 * 269.99949 * 3 2 1 31 31 H 1.08995 * 109.46856 * 29.99657 * 3 2 1 32 32 H 1.09000 * 109.47641 * 150.00315 * 3 2 1 33 33 H 1.08997 * 109.47044 * 60.00078 * 6 4 2 34 34 H 1.08999 * 109.47353 * 299.99582 * 6 4 2 35 35 H 1.09001 * 109.47666 * 60.00323 * 7 6 4 36 36 H 1.09002 * 109.47489 * 299.99973 * 7 6 4 37 37 H 1.09011 * 109.47083 * 59.99469 * 8 7 6 38 38 H 1.08997 * 109.47087 * 300.00638 * 8 7 6 39 39 H 0.96999 * 119.99814 * 345.00344 * 9 8 7 40 40 H 1.07992 * 119.88185 * 359.96919 * 14 13 10 41 41 H 1.07997 * 120.12556 * 180.27286 * 15 14 13 42 42 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 44 44 H 1.08005 * 119.87252 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1558 -2.6097 -0.0010 8 6 5.6858 -2.6098 -0.0009 9 7 6.1742 -3.9910 -0.0002 10 16 7.7545 -4.3107 -0.3779 11 8 7.9198 -5.7167 -0.2557 12 8 8.0337 -3.5963 -1.5741 13 6 8.7493 -3.5816 0.8806 14 6 9.1971 -2.2777 0.7343 15 6 9.9699 -1.6963 1.7135 16 6 10.3150 -2.4344 2.8607 17 6 11.1140 -1.8497 3.8701 18 1 11.6987 -2.4766 4.5270 19 6 11.1471 -0.4584 4.0182 20 7 10.2067 0.2787 3.4854 21 14 12.5343 0.3462 4.9763 22 1 13.6525 0.6667 4.0533 23 1 12.0398 1.5960 5.6077 24 1 13.0131 -0.5846 6.0297 25 6 9.8595 -3.7589 2.9958 26 6 9.0832 -4.3182 2.0066 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 2.3792 1.5833 -1.0277 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5138 33 1 4.0095 -0.6536 0.8888 34 1 4.0089 -0.6532 -0.8911 35 1 3.7922 -3.1238 -0.8907 36 1 3.7929 -3.1234 0.8893 37 1 6.0492 -2.0958 0.8891 38 1 6.0492 -2.0960 -0.8909 39 1 5.5708 -4.7186 0.2175 40 1 8.9353 -1.7149 -0.1493 41 1 10.3141 -0.6790 1.5997 42 1 10.2298 1.2429 3.5877 43 1 10.1188 -4.3346 3.8719 44 1 8.7321 -5.3345 2.1082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390411788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -129.483298 kcal Electronic energy + Delta-G solvation = -26792.214786 eV Core-core repulsion = 22834.724392 eV Total energy + Delta-G solvation = -3957.490394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89084 -39.35678 -38.15001 -37.15740 -36.75600 -36.49431 -35.77740 -33.34728 -32.03924 -31.26340 -29.34672 -27.80530 -27.59427 -25.97833 -23.32740 -22.95260 -22.75437 -20.50223 -19.98591 -19.39793 -18.58494 -18.27363 -17.86537 -17.29380 -17.14991 -17.11721 -16.69482 -15.96232 -15.80235 -15.70588 -15.12920 -14.92436 -14.41550 -14.31718 -14.09218 -13.93085 -13.84451 -13.57526 -13.50555 -13.40723 -13.27780 -13.08277 -13.01937 -12.95949 -12.88148 -12.86177 -12.58129 -12.39455 -12.32673 -11.97931 -11.89264 -11.51833 -11.29852 -11.20769 -10.89464 -10.32377 -9.76583 -9.67690 -9.52236 -8.85301 -6.62510 -0.27167 0.50714 1.08409 1.37836 1.45281 1.51755 1.60574 2.06310 2.13460 2.30866 2.56043 2.96795 3.51411 3.55307 3.65819 4.01022 4.05221 4.13332 4.33936 4.34988 4.35633 4.45206 4.50414 4.56475 4.66982 4.72501 4.81555 4.87830 4.90302 4.92325 4.98195 5.00606 5.13544 5.17950 5.26814 5.35106 5.52383 5.55027 5.62010 5.79093 5.95572 6.17301 6.20567 6.33648 6.51463 6.70759 6.83408 7.14710 8.09884 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009455 B = 0.003012 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.721428 B = 9294.176377 C =11631.795478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.068 3.932 4 C 0.505 3.495 5 O -0.588 6.588 6 C -0.136 4.136 7 C -0.102 4.102 8 C 0.115 3.885 9 N -1.114 6.114 10 S 2.727 3.273 11 O -1.005 7.005 12 O -1.001 7.001 13 C -0.796 4.796 14 C -0.017 4.017 15 C -0.206 4.206 16 C 0.111 3.889 17 C -0.467 4.467 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.791 5.791 21 Si 0.989 3.011 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.257 1.257 25 C -0.259 4.259 26 C -0.003 4.003 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.422 0.578 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.299 0.701 43 H 0.108 0.892 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 7.883 -3.445 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C -0.074 4.074 4 C 0.295 3.705 5 O -0.469 6.469 6 C -0.176 4.176 7 C -0.142 4.142 8 C -0.011 4.011 9 N -0.874 5.874 10 S 2.822 3.178 11 O -0.996 6.996 12 O -0.991 6.991 13 C -0.889 4.889 14 C -0.037 4.037 15 C -0.226 4.226 16 C 0.107 3.893 17 C -0.494 4.494 18 H 0.106 0.894 19 C -0.183 4.183 20 N -0.414 5.414 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.181 1.181 25 C -0.280 4.280 26 C -0.023 4.023 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.459 7.294 -4.270 15.893 hybrid contribution 0.329 0.314 1.232 1.313 sum -13.130 7.608 -3.038 15.476 Atomic orbital electron populations 1.21727 0.78858 1.03463 1.02152 1.47978 1.07801 1.07123 1.73007 1.22127 0.97971 0.83842 1.03464 1.21173 0.91302 0.83066 0.74948 1.90675 1.71504 1.32768 1.51923 1.21685 0.90157 0.98885 1.06920 1.21406 0.92571 0.96543 1.03660 1.21387 0.95527 0.81308 1.02849 1.55307 1.28293 1.15183 1.88645 1.00221 0.72412 0.71800 0.73318 1.93461 1.86209 1.32004 1.87923 1.93454 1.84836 1.75127 1.45708 1.29619 1.31146 1.07704 1.20415 1.20476 0.94148 0.92345 0.96770 1.21363 1.05687 1.00835 0.94697 1.18203 0.87601 0.91755 0.91700 1.20210 1.22503 0.93014 1.13625 0.89392 1.26930 0.98029 0.97532 0.95796 1.69823 1.29038 1.08725 1.33766 0.85082 0.77444 0.78030 0.78590 1.18561 1.18579 1.18090 1.21271 1.07938 0.97759 1.01004 1.20447 0.93452 0.97128 0.91268 0.92529 0.88438 0.92561 0.90957 0.89172 0.89653 0.86452 0.86096 0.91106 0.91252 0.91255 0.89885 0.74215 0.86173 0.86814 0.88947 0.87372 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.44 127.77 1.33 2.44 16 2 N -0.63 -9.93 3.27 -871.90 -2.85 -12.78 16 3 C 0.07 0.55 10.24 127.77 1.31 1.86 16 4 C 0.51 11.02 7.67 87.65 0.67 11.70 16 5 O -0.59 -17.93 15.56 -3.03 -0.05 -17.97 16 6 C -0.14 -2.33 4.25 29.85 0.13 -2.20 16 7 C -0.10 -2.23 4.64 30.59 0.14 -2.09 16 8 C 0.12 2.88 6.22 86.38 0.54 3.41 16 9 N -1.11 -31.84 6.00 -187.49 -1.12 -32.96 16 10 S 2.73 101.06 5.73 -56.49 -0.32 100.74 16 11 O -1.01 -41.47 17.26 -128.00 -2.21 -43.68 16 12 O -1.00 -40.85 16.72 -128.00 -2.14 -42.99 16 13 C -0.80 -34.09 5.97 22.46 0.13 -33.95 16 14 C -0.02 -0.78 9.49 22.22 0.21 -0.57 16 15 C -0.21 -10.18 8.70 22.73 0.20 -9.99 16 16 C 0.11 5.65 5.57 -21.29 -0.12 5.54 16 17 C -0.47 -22.95 9.05 23.46 0.21 -22.74 16 18 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 19 C 0.04 1.66 5.14 85.26 0.44 2.10 16 20 N -0.79 -36.28 10.95 21.83 0.24 -36.04 16 21 Si 0.99 33.62 29.60 68.60 2.03 35.65 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 23 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 24 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 25 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 26 C 0.00 -0.14 9.49 22.22 0.21 0.07 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 29 H 0.06 1.01 7.42 -2.38 -0.02 0.99 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 32 H 0.08 0.61 6.44 -2.39 -0.02 0.59 16 33 H 0.12 1.62 7.40 -2.39 -0.02 1.60 16 34 H 0.12 1.53 8.11 -2.39 -0.02 1.51 16 35 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.08 2.00 7.75 -2.39 -0.02 1.98 16 39 H 0.42 10.32 8.65 -96.75 -0.84 9.48 16 40 H 0.12 4.85 7.59 -2.91 -0.02 4.82 16 41 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 42 H 0.30 12.07 8.30 -92.71 -0.77 11.30 16 43 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 44 H 0.12 4.86 7.60 -2.91 -0.02 4.84 16 Total: -1.00 -70.59 381.25 -0.62 -71.20 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.18 Total: 35.40 kcal Atomic # 6 Polarization: -62.20 SS G_CDS: 5.63 Total: -56.57 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.74 Total: -81.78 kcal Atomic # 8 Polarization: -100.24 SS G_CDS: -4.40 Total: -104.64 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Atomic # 16 Polarization: 101.06 SS G_CDS: -0.32 Total: 100.74 kcal Total: -70.59 -0.62 -71.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390411788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.278 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds