Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34775 * 116.99747 * 2 1 4 4 O 1.21537 * 119.99958 * 359.97438 * 3 2 1 5 5 C 1.47236 * 120.00125 * 179.97438 * 3 2 1 6 6 C 1.40046 * 120.61889 * 0.25440 * 5 3 2 7 7 C 1.38306 * 118.37114 * 180.24197 * 6 5 3 8 8 C 1.38430 * 119.52813 * 359.74588 * 7 6 5 9 9 N 1.31803 * 121.24349 * 0.02562 * 8 7 6 10 10 C 1.32515 * 121.77673 * 359.97438 * 9 8 7 11 11 S 1.76194 * 119.84157 * 179.97438 * 10 9 8 12 12 C 1.81000 * 100.00100 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47261 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47253 * 305.00300 * 13 12 11 15 15 O 1.42900 * 109.47194 * 64.99707 * 13 12 11 16 16 C 1.52998 * 109.47107 * 184.99804 * 13 12 11 17 17 N 1.46899 * 109.46858 * 175.04575 * 16 13 12 18 18 C 1.46903 * 110.99991 * 163.94840 * 17 16 13 19 19 C 1.46902 * 111.00138 * 287.89426 * 17 16 13 20 20 C 1.50702 * 109.47206 * 170.00004 * 19 17 16 21 21 H 1.07990 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99588 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99737 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.46938 * 120.00335 * 24 22 20 27 27 H 1.48505 * 109.46930 * 240.00323 * 24 22 20 28 28 H 1.08996 * 109.47580 * 300.00166 * 1 2 3 29 29 H 1.08999 * 109.47087 * 60.00132 * 1 2 3 30 30 H 1.09008 * 109.46748 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.81366 * 359.97144 * 6 5 3 32 32 H 1.08001 * 120.23491 * 179.72645 * 7 6 5 33 33 H 1.07999 * 119.37334 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47303 * 59.99574 * 12 11 10 35 35 H 1.09001 * 109.46702 * 299.99579 * 12 11 10 36 36 H 0.96698 * 114.00266 * 60.00042 * 15 13 12 37 37 H 1.08997 * 109.47560 * 55.04389 * 16 13 12 38 38 H 1.08998 * 109.46907 * 295.04026 * 16 13 12 39 39 H 1.08998 * 109.47439 * 189.27288 * 18 17 16 40 40 H 1.08994 * 109.47470 * 69.26701 * 18 17 16 41 41 H 1.09004 * 109.46549 * 309.26905 * 18 17 16 42 42 H 1.08997 * 109.47475 * 290.00611 * 19 17 16 43 43 H 1.09000 * 109.46537 * 50.00068 * 19 17 16 44 44 H 0.97003 * 119.99947 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5342 1.2780 0.0006 6 6 4.3097 0.1119 -0.0042 7 6 5.6869 0.2384 0.0017 8 6 6.2561 1.5003 0.0067 9 7 5.5099 2.5868 0.0065 10 6 4.1862 2.5243 0.0010 11 16 3.2384 4.0096 0.0017 12 6 4.5719 5.2335 0.0100 13 6 3.9723 6.6411 0.0111 14 1 3.2909 6.7464 -0.8332 15 8 3.2569 6.8532 1.2298 16 6 5.0950 7.6737 -0.1076 17 7 4.5136 9.0176 -0.2259 18 6 5.5221 10.0526 0.0382 19 6 3.8953 9.2095 -1.5446 20 6 3.1026 10.4912 -1.5459 21 1 3.0624 11.1022 -0.6564 22 6 2.4294 10.8841 -2.6833 23 7 2.4788 10.1403 -3.7667 24 14 1.4473 12.4732 -2.6852 25 1 1.5519 13.1214 -1.3533 26 1 1.9868 13.3872 -3.7238 27 1 0.0229 12.1743 -2.9804 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.8436 -0.8624 -0.0080 32 1 6.3138 -0.6410 0.0027 33 1 7.3318 1.5962 0.0109 34 1 5.1903 5.1030 -0.8780 35 1 5.1837 5.0981 0.9019 36 1 3.8020 6.7746 2.0246 37 1 5.6949 7.4583 -0.9918 38 1 5.7262 7.6278 0.7798 39 1 5.0351 11.0253 0.1069 40 1 6.2494 10.0669 -0.7735 41 1 6.0301 9.8335 0.9774 42 1 4.6731 9.2626 -2.3063 43 1 3.2321 8.3718 -1.7602 44 1 2.0049 10.4165 -4.5667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414119971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -85.102374 kcal Electronic energy + Delta-G solvation = -26594.595389 eV Core-core repulsion = 22639.029497 eV Total energy + Delta-G solvation = -3955.565893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96678 -39.73957 -37.90767 -36.68546 -35.45415 -33.22966 -32.45200 -31.88502 -30.89231 -28.13268 -27.40820 -26.72244 -25.00448 -24.13269 -23.64998 -21.99638 -21.36315 -20.06463 -18.57001 -17.96651 -17.31912 -16.64695 -16.54896 -16.36467 -16.04943 -15.58059 -15.23328 -14.71817 -14.65155 -14.55769 -14.47441 -14.11031 -13.60806 -13.47782 -13.36494 -13.24248 -12.76291 -12.49168 -12.27291 -12.09385 -11.88354 -11.47946 -11.36646 -11.13663 -11.06884 -10.92110 -10.78861 -10.59056 -10.47587 -10.36628 -10.03605 -9.99701 -9.81887 -9.75045 -9.55475 -9.08068 -8.37645 -7.63368 -7.18114 -5.97158 -3.97490 0.14234 0.75092 1.42751 2.24804 2.26299 2.39250 3.33765 3.35703 3.42846 3.48262 4.12598 4.35482 4.41851 4.46644 4.60764 4.65144 4.78733 4.84222 4.85366 4.94860 5.04442 5.22698 5.28647 5.36715 5.41245 5.46352 5.54151 5.62454 5.72182 5.82326 6.02478 6.06444 6.09521 6.11060 6.37500 6.45480 6.74214 7.30477 7.32143 7.34846 7.45901 7.84707 8.07618 8.13862 8.24251 8.59472 9.09876 9.66271 11.14049 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002553 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.892172 B =10966.095880 C =12194.791525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.503 3.497 4 O -0.470 6.470 5 C -0.180 4.180 6 C 0.002 3.998 7 C -0.207 4.207 8 C 0.155 3.845 9 N -0.495 5.495 10 C 0.155 3.845 11 S 0.078 5.922 12 C -0.180 4.180 13 C 0.128 3.872 14 H 0.112 0.888 15 O -0.536 6.536 16 C 0.034 3.966 17 N -0.532 5.532 18 C 0.042 3.958 19 C 0.190 3.810 20 C -0.503 4.503 21 H 0.064 0.936 22 C 0.054 3.946 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.284 1.284 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.364 0.636 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.012 0.988 41 H 0.042 0.958 42 H -0.010 1.010 43 H 0.032 0.968 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -25.465 9.162 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.347 3.653 4 O -0.358 6.358 5 C -0.192 4.192 6 C -0.025 4.025 7 C -0.231 4.231 8 C -0.007 4.007 9 N -0.208 5.208 10 C -0.094 4.094 11 S 0.327 5.673 12 C -0.329 4.329 13 C 0.066 3.934 14 H 0.130 0.870 15 O -0.339 6.339 16 C -0.097 4.097 17 N -0.257 5.257 18 C -0.107 4.107 19 C 0.065 3.935 20 C -0.541 4.541 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.539 5.539 24 Si 0.725 3.275 25 H -0.197 1.197 26 H -0.212 1.212 27 H -0.210 1.210 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.209 0.791 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.007 0.993 43 H 0.050 0.950 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.046 -23.817 8.915 25.750 hybrid contribution 1.583 -0.504 -0.530 1.744 sum 5.630 -24.320 8.385 26.334 Atomic orbital electron populations 1.23313 0.75519 1.03734 1.03097 1.86501 1.23884 1.32288 1.84789 1.20742 0.88491 0.81943 0.74159 1.90876 1.65618 1.34959 1.44378 1.19510 0.90597 0.94218 1.14894 1.21807 0.93691 0.97965 0.89002 1.22026 0.95252 0.99426 1.06406 1.23100 1.00512 0.87851 0.89277 1.68343 1.03604 1.32430 1.16462 1.23977 0.93631 0.98035 0.93727 1.87520 1.04892 0.89756 1.85113 1.24766 1.01983 0.99204 1.06938 1.21710 0.94483 0.87906 0.89270 0.87017 1.86717 1.38613 1.93969 1.14588 1.22640 0.95123 0.91879 1.00093 1.62044 1.29339 0.99214 1.35074 1.22182 0.93590 0.97223 0.97697 1.19818 0.93518 0.97866 0.82268 1.21178 1.29372 1.05943 0.97632 0.91820 1.24992 0.96801 0.97423 0.95512 1.69967 1.43487 1.38129 1.02364 0.86445 0.79838 0.83243 0.77925 1.19659 1.21212 1.20989 0.91559 0.91513 0.87972 0.83169 0.83834 0.81789 0.88277 0.88990 0.79079 0.94897 0.91844 0.90889 0.96964 0.93902 0.99265 0.95042 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.56 9.89 -40.69 -0.40 -3.96 16 3 C 0.50 6.34 7.88 34.39 0.27 6.61 16 4 O -0.47 -7.28 13.59 -19.29 -0.26 -7.54 16 5 C -0.18 -2.11 5.91 -104.65 -0.62 -2.73 16 6 C 0.00 0.02 9.73 -38.88 -0.38 -0.36 16 7 C -0.21 -1.38 10.09 -39.49 -0.40 -1.78 16 8 C 0.16 1.29 11.16 -17.49 -0.20 1.10 16 9 N -0.50 -5.92 9.13 -11.66 -0.11 -6.03 16 10 C 0.15 2.06 7.02 -16.34 -0.11 1.95 16 11 S 0.08 1.21 18.77 -107.50 -2.02 -0.80 16 12 C -0.18 -2.59 4.50 37.16 0.17 -2.43 16 13 C 0.13 2.22 3.01 -26.73 -0.08 2.14 16 14 H 0.11 2.34 6.46 -51.93 -0.34 2.00 16 15 O -0.54 -9.49 13.04 -35.23 -0.46 -9.95 16 16 C 0.03 0.60 4.61 -3.83 -0.02 0.58 16 17 N -0.53 -11.81 4.66 -244.37 -1.14 -12.95 16 18 C 0.04 0.83 9.32 60.07 0.56 1.39 16 19 C 0.19 5.10 4.57 -4.97 -0.02 5.08 16 20 C -0.50 -14.59 8.58 -34.44 -0.30 -14.89 16 21 H 0.06 1.84 7.10 -52.49 -0.37 1.47 16 22 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 24 Si 0.90 22.33 29.54 -169.99 -5.02 17.30 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.15 0.85 7.70 -52.49 -0.40 0.45 16 32 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.10 1.43 8.12 -51.92 -0.42 1.00 16 35 H 0.09 1.18 8.12 -51.92 -0.42 0.76 16 36 H 0.36 4.86 9.05 45.56 0.41 5.28 16 37 H 0.03 0.59 8.05 -51.93 -0.42 0.18 16 38 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 39 H 0.07 1.54 7.02 -51.93 -0.36 1.17 16 40 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 41 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16 42 H -0.01 -0.30 8.07 -51.93 -0.42 -0.71 16 43 H 0.03 0.90 6.34 -51.93 -0.33 0.57 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -35.59 384.24 -8.59 -44.18 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.56 Total: 1.16 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.15 Total: -0.53 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.51 Total: -45.65 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.12 Total: -21.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.02 Total: -0.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.59 -8.59 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414119971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.921 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds