Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34775 * 116.99747 * 2 1 4 4 O 1.21537 * 119.99958 * 359.97438 * 3 2 1 5 5 C 1.47236 * 120.00125 * 179.97438 * 3 2 1 6 6 C 1.40046 * 120.61889 * 0.25440 * 5 3 2 7 7 C 1.38306 * 118.37114 * 180.24197 * 6 5 3 8 8 C 1.38430 * 119.52813 * 359.74588 * 7 6 5 9 9 N 1.31803 * 121.24349 * 0.02562 * 8 7 6 10 10 C 1.32515 * 121.77673 * 359.97438 * 9 8 7 11 11 S 1.76194 * 119.84157 * 179.97438 * 10 9 8 12 12 C 1.81000 * 100.00100 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47261 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47253 * 305.00300 * 13 12 11 15 15 O 1.42900 * 109.47194 * 64.99707 * 13 12 11 16 16 C 1.52998 * 109.47107 * 184.99804 * 13 12 11 17 17 N 1.46899 * 109.46858 * 175.04575 * 16 13 12 18 18 C 1.46903 * 110.99991 * 163.94840 * 17 16 13 19 19 C 1.46902 * 111.00138 * 287.89426 * 17 16 13 20 20 C 1.50702 * 109.47206 * 170.00004 * 19 17 16 21 21 H 1.07990 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99588 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99737 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.46938 * 120.00335 * 24 22 20 27 27 H 1.48505 * 109.46930 * 240.00323 * 24 22 20 28 28 H 1.08996 * 109.47580 * 300.00166 * 1 2 3 29 29 H 1.08999 * 109.47087 * 60.00132 * 1 2 3 30 30 H 1.09008 * 109.46748 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.81366 * 359.97144 * 6 5 3 32 32 H 1.08001 * 120.23491 * 179.72645 * 7 6 5 33 33 H 1.07999 * 119.37334 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47303 * 59.99574 * 12 11 10 35 35 H 1.09001 * 109.46702 * 299.99579 * 12 11 10 36 36 H 0.96698 * 114.00266 * 60.00042 * 15 13 12 37 37 H 1.08997 * 109.47560 * 55.04389 * 16 13 12 38 38 H 1.08998 * 109.46907 * 295.04026 * 16 13 12 39 39 H 1.08998 * 109.47439 * 189.27288 * 18 17 16 40 40 H 1.08994 * 109.47470 * 69.26701 * 18 17 16 41 41 H 1.09004 * 109.46549 * 309.26905 * 18 17 16 42 42 H 1.08997 * 109.47475 * 290.00611 * 19 17 16 43 43 H 1.09000 * 109.46537 * 50.00068 * 19 17 16 44 44 H 0.97003 * 119.99947 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5342 1.2780 0.0006 6 6 4.3097 0.1119 -0.0042 7 6 5.6869 0.2384 0.0017 8 6 6.2561 1.5003 0.0067 9 7 5.5099 2.5868 0.0065 10 6 4.1862 2.5243 0.0010 11 16 3.2384 4.0096 0.0017 12 6 4.5719 5.2335 0.0100 13 6 3.9723 6.6411 0.0111 14 1 3.2909 6.7464 -0.8332 15 8 3.2569 6.8532 1.2298 16 6 5.0950 7.6737 -0.1076 17 7 4.5136 9.0176 -0.2259 18 6 5.5221 10.0526 0.0382 19 6 3.8953 9.2095 -1.5446 20 6 3.1026 10.4912 -1.5459 21 1 3.0624 11.1022 -0.6564 22 6 2.4294 10.8841 -2.6833 23 7 2.4788 10.1403 -3.7667 24 14 1.4473 12.4732 -2.6852 25 1 1.5519 13.1214 -1.3533 26 1 1.9868 13.3872 -3.7238 27 1 0.0229 12.1743 -2.9804 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.8436 -0.8624 -0.0080 32 1 6.3138 -0.6410 0.0027 33 1 7.3318 1.5962 0.0109 34 1 5.1903 5.1030 -0.8780 35 1 5.1837 5.0981 0.9019 36 1 3.8020 6.7746 2.0246 37 1 5.6949 7.4583 -0.9918 38 1 5.7262 7.6278 0.7798 39 1 5.0351 11.0253 0.1069 40 1 6.2494 10.0669 -0.7735 41 1 6.0301 9.8335 0.9774 42 1 4.6731 9.2626 -2.3063 43 1 3.2321 8.3718 -1.7602 44 1 2.0049 10.4165 -4.5667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414119971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -112.249843 kcal Electronic energy + Delta-G solvation = -26595.772592 eV Core-core repulsion = 22639.029497 eV Total energy + Delta-G solvation = -3956.743095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81306 -40.53777 -39.43903 -37.58662 -37.12118 -34.62923 -33.99196 -32.65724 -32.24433 -29.48136 -28.81356 -28.17988 -25.89655 -25.50948 -24.85842 -23.43251 -22.30710 -21.78800 -19.41757 -18.85448 -18.62515 -18.15915 -17.53591 -17.49496 -17.12733 -16.95738 -16.58545 -16.22802 -16.09623 -15.67886 -15.44230 -15.23955 -15.10393 -14.71369 -14.32846 -14.22522 -14.00369 -13.95524 -13.53193 -13.27789 -13.09561 -12.97064 -12.89507 -12.64296 -12.56525 -12.53153 -12.31102 -12.17713 -11.86128 -11.64242 -11.34643 -11.18190 -11.01505 -10.85919 -10.82257 -10.67008 -10.61379 -8.98874 -8.71833 -8.21701 -6.31230 -0.64441 0.05209 0.41316 1.21082 1.38106 1.39527 1.40038 1.53433 1.57701 2.39276 2.60216 3.09958 3.16388 3.40519 3.53612 3.66036 3.71496 3.82592 3.94130 3.96778 4.18329 4.21548 4.30340 4.30984 4.32302 4.45562 4.54272 4.57423 4.68805 4.71159 4.76014 4.87657 4.98613 5.01195 5.07103 5.17121 5.21166 5.28752 5.49175 5.63875 6.04467 6.31840 6.55844 6.59070 6.60738 6.84539 6.94728 7.38086 8.89897 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002553 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.892172 B =10966.095880 C =12194.791525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.501 3.499 4 O -0.510 6.510 5 C -0.196 4.196 6 C 0.005 3.995 7 C -0.180 4.180 8 C 0.147 3.853 9 N -0.516 5.516 10 C 0.142 3.858 11 S 0.004 5.996 12 C -0.150 4.150 13 C 0.137 3.863 14 H 0.065 0.935 15 O -0.554 6.554 16 C 0.036 3.964 17 N -0.545 5.545 18 C 0.043 3.957 19 C 0.207 3.793 20 C -0.521 4.521 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.280 1.280 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.191 0.809 33 H 0.200 0.800 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.383 0.617 37 H 0.031 0.969 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.009 0.991 41 H 0.085 0.915 42 H -0.039 1.039 43 H 0.002 0.998 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -27.554 10.542 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.346 3.654 4 O -0.401 6.401 5 C -0.208 4.208 6 C -0.022 4.022 7 C -0.203 4.203 8 C -0.014 4.014 9 N -0.230 5.230 10 C -0.106 4.106 11 S 0.251 5.749 12 C -0.299 4.299 13 C 0.076 3.924 14 H 0.083 0.917 15 O -0.361 6.361 16 C -0.094 4.094 17 N -0.269 5.269 18 C -0.105 4.105 19 C 0.081 3.919 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.199 4.199 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.206 1.206 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.197 0.803 32 H 0.208 0.792 33 H 0.217 0.783 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.232 0.768 37 H 0.049 0.951 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.103 0.897 42 H -0.021 1.021 43 H 0.020 0.980 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.014 -25.949 10.322 28.567 hybrid contribution 1.082 -0.103 -0.919 1.423 sum 7.096 -26.053 9.403 28.592 Atomic orbital electron populations 1.23596 0.74163 1.06034 1.02490 1.86494 1.25184 1.30794 1.84158 1.21089 0.89118 0.82039 0.73157 1.90862 1.66543 1.36334 1.46352 1.19678 0.90413 0.94965 1.15766 1.22215 0.94325 0.97726 0.87896 1.22557 0.94887 1.00348 1.02502 1.23825 1.01926 0.87646 0.88037 1.68270 1.03039 1.34550 1.17105 1.23579 0.94258 0.96768 0.96023 1.87717 1.07170 0.92787 1.87231 1.24411 1.01193 0.96756 1.07548 1.21387 0.93291 0.89812 0.87940 0.91713 1.86669 1.39785 1.94156 1.15446 1.22736 0.95433 0.89556 1.01704 1.61930 1.31166 1.01938 1.31820 1.22210 0.92860 0.95798 0.99625 1.19429 0.92344 0.96078 0.84098 1.21495 1.29948 1.06771 0.97746 0.92023 1.25951 0.97825 1.01160 0.95012 1.70098 1.44369 1.40074 1.03080 0.85321 0.78028 0.78735 0.78467 1.18689 1.20055 1.20557 0.92061 0.92362 0.84116 0.80308 0.79207 0.78282 0.88650 0.87017 0.76834 0.95102 0.87850 0.92612 0.97225 0.89689 1.02094 0.98009 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -6.71 9.89 -56.86 -0.56 -7.28 16 3 C 0.50 12.94 7.88 70.19 0.55 13.49 16 4 O -0.51 -16.97 13.59 19.71 0.27 -16.70 16 5 C -0.20 -4.51 5.91 -19.88 -0.12 -4.62 16 6 C 0.00 0.06 9.73 22.72 0.22 0.28 16 7 C -0.18 -1.58 10.09 22.33 0.23 -1.35 16 8 C 0.15 1.94 11.16 84.74 0.95 2.88 16 9 N -0.52 -11.68 9.13 -190.81 -1.74 -13.42 16 10 C 0.14 3.82 7.02 85.18 0.60 4.42 16 11 S 0.00 0.13 18.77 -56.49 -1.06 -0.93 16 12 C -0.15 -4.48 4.50 71.98 0.32 -4.16 16 13 C 0.14 5.01 3.01 30.59 0.09 5.10 16 14 H 0.06 2.99 6.46 -2.39 -0.02 2.97 16 15 O -0.55 -20.23 13.04 -148.98 -1.94 -22.17 16 16 C 0.04 1.29 4.61 86.30 0.40 1.68 16 17 N -0.54 -24.58 4.66 -927.06 -4.32 -28.89 16 18 C 0.04 1.68 9.32 127.69 1.19 2.87 16 19 C 0.21 11.67 4.57 85.56 0.39 12.06 16 20 C -0.52 -31.25 8.58 25.60 0.22 -31.03 16 21 H 0.06 3.64 7.10 -2.92 -0.02 3.62 16 22 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 23 N -0.94 -58.93 13.29 21.45 0.28 -58.64 16 24 Si 0.97 46.53 29.54 68.60 2.03 48.56 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.18 1.29 7.70 -2.91 -0.02 1.26 16 32 H 0.19 -0.02 8.06 -2.91 -0.02 -0.05 16 33 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.09 2.85 8.12 -2.40 -0.02 2.84 16 35 H 0.11 2.81 8.12 -2.39 -0.02 2.79 16 36 H 0.38 10.09 9.05 -74.06 -0.67 9.42 16 37 H 0.03 1.13 8.05 -2.39 -0.02 1.11 16 38 H 0.10 2.88 7.82 -2.39 -0.02 2.86 16 39 H 0.06 2.34 7.02 -2.39 -0.02 2.32 16 40 H 0.01 0.36 8.07 -2.39 -0.02 0.34 16 41 H 0.08 2.58 7.88 -2.39 -0.02 2.56 16 42 H -0.04 -2.33 8.07 -2.39 -0.02 -2.35 16 43 H 0.00 0.12 6.34 -2.39 -0.02 0.10 16 44 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -83.31 384.24 0.01 -83.30 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.35 Total: 12.54 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.70 Total: 3.62 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -5.77 Total: -100.95 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -2.24 Total: -46.14 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.06 Total: -0.93 kcal Total: -83.31 0.01 -83.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414119971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.947 kcal (2) G-P(sol) polarization free energy of solvation -83.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds