Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99902 * 2 1 4 4 C 1.52996 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47117 * 64.99942 * 4 3 2 6 6 C 1.46504 * 119.99925 * 275.00376 * 5 4 3 7 7 C 1.50696 * 109.46915 * 274.99917 * 6 5 4 8 8 H 1.08003 * 120.00440 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99714 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00238 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99991 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47652 * 59.99443 * 11 9 7 13 13 H 1.48508 * 109.47258 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46932 * 299.99311 * 11 9 7 15 15 S 1.65602 * 119.99750 * 95.00354 * 5 4 3 16 16 O 1.42098 * 106.40127 * 336.46353 * 15 5 4 17 17 O 1.42098 * 106.39930 * 203.53815 * 15 5 4 18 18 N 1.65594 * 107.21618 * 90.00112 * 15 5 4 19 19 C 1.47158 * 120.98291 * 270.02103 * 18 15 5 20 20 C 1.53298 * 108.38580 * 129.44841 * 19 18 15 21 21 O 1.42956 * 109.22271 * 52.29529 * 20 19 18 22 22 C 1.42957 * 114.17222 * 297.42305 * 21 20 19 23 23 H 1.09001 * 109.51201 * 302.65319 * 22 21 20 24 24 C 1.53006 * 109.51131 * 182.50383 * 22 21 20 25 25 F 1.39904 * 109.46919 * 65.25529 * 24 22 21 26 26 C 1.47151 * 120.98317 * 90.00125 * 18 15 5 27 27 H 1.09006 * 109.46717 * 299.99742 * 1 2 3 28 28 H 1.08998 * 109.46996 * 59.99865 * 1 2 3 29 29 H 1.08994 * 109.46575 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46846 * 60.00039 * 3 2 1 31 31 H 1.09006 * 109.47351 * 300.00326 * 3 2 1 32 32 H 1.09003 * 109.46613 * 305.00343 * 4 3 2 33 33 H 1.08993 * 109.47538 * 185.00596 * 4 3 2 34 34 H 1.08997 * 109.47143 * 34.99932 * 6 5 4 35 35 H 1.08998 * 109.46643 * 155.00054 * 6 5 4 36 36 H 0.96995 * 120.00165 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.67763 * 249.16520 * 19 18 15 38 38 H 1.08993 * 109.68084 * 9.68060 * 19 18 15 39 39 H 1.08993 * 109.51188 * 172.22574 * 20 19 18 40 40 H 1.09005 * 109.50828 * 292.32410 * 20 19 18 41 41 H 1.09002 * 109.47221 * 185.25196 * 24 22 21 42 42 H 1.09003 * 109.47277 * 305.25169 * 24 22 21 43 43 H 1.09004 * 109.68538 * 110.82923 * 26 18 15 44 44 H 1.08996 * 109.71213 * 350.29339 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.0004 -0.8949 -1.3782 7 6 5.2994 -1.4244 -0.8276 8 1 6.0330 -0.7422 -0.4241 9 6 5.5513 -2.7799 -0.8389 10 7 4.6578 -3.6108 -1.3297 11 14 7.1612 -3.4364 -0.1556 12 1 7.2811 -3.0611 1.2761 13 1 7.1863 -4.9159 -0.2829 14 1 8.2959 -2.8544 -0.9167 15 16 4.4454 1.5132 -2.5263 16 8 3.8178 2.7744 -2.3400 17 8 4.2758 0.7259 -3.6970 18 7 6.0732 1.7733 -2.3695 19 6 6.5868 2.9260 -1.6124 20 6 7.6304 2.4200 -0.6100 21 8 8.6016 1.6300 -1.3001 22 6 8.0701 0.4531 -1.9135 23 1 7.5814 -0.1622 -1.1580 24 6 9.2045 -0.3405 -2.5649 25 9 10.0757 -0.8071 -1.5746 26 6 7.0491 0.8584 -2.9827 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0890 34 1 3.1679 -1.3218 -0.8191 35 1 3.9119 -1.1707 -2.4290 36 1 4.8349 -4.5644 -1.3373 37 1 7.0495 3.6376 -2.2962 38 1 5.7682 3.4089 -1.0788 39 1 8.1221 3.2696 -0.1363 40 1 7.1399 1.8126 0.1507 41 1 8.7886 -1.1871 -3.1112 42 1 9.7498 0.3042 -3.2542 43 1 7.5584 1.3619 -3.8045 44 1 6.5372 -0.0284 -3.3564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416573197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -206.801873 kcal Electronic energy + Delta-G solvation = -31017.919555 eV Core-core repulsion = 26626.307151 eV Total energy + Delta-G solvation = -4391.612404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.29025 -39.10578 -37.77291 -36.81663 -35.40543 -35.30296 -34.55276 -32.65202 -32.31574 -29.53644 -28.07716 -26.80778 -25.70010 -25.37403 -22.98868 -22.89423 -21.88463 -20.80900 -18.59618 -17.47619 -17.12730 -16.81475 -16.37962 -16.23416 -15.96884 -15.67397 -15.45199 -15.28600 -14.90687 -14.80012 -14.49487 -14.43786 -14.21240 -13.88476 -13.57858 -13.25715 -12.67103 -12.40635 -12.25335 -12.08586 -11.93200 -11.82692 -11.73462 -11.54894 -11.33186 -11.26552 -11.10287 -11.00117 -10.90297 -10.86423 -10.74910 -10.40242 -10.36934 -10.13842 -9.94702 -9.61159 -9.31466 -8.62190 -8.45862 -8.04935 -6.09709 -4.16914 1.10572 3.27340 3.28030 3.33444 3.39329 3.75624 3.97916 4.13694 4.36392 4.57938 4.88243 4.93048 4.95409 5.10667 5.18804 5.23982 5.30736 5.35289 5.36664 5.41443 5.45590 5.51950 5.60223 5.62893 5.66303 5.73154 5.75727 5.85733 5.92309 5.93647 6.20698 6.26056 6.28426 6.47055 6.69819 7.25197 7.44831 7.48790 7.52096 7.73444 7.88689 8.18356 8.87290 9.48415 10.97577 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.006614 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.541094 B = 4232.373793 C = 5956.088343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.984 5.984 6 C 0.246 3.754 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.266 1.266 15 S 2.782 3.218 16 O -0.998 6.998 17 O -0.972 6.972 18 N -1.006 6.006 19 C 0.090 3.910 20 C 0.050 3.950 21 O -0.375 6.375 22 C 0.037 3.963 23 H 0.101 0.899 24 C 0.075 3.925 25 F -0.212 7.212 26 C 0.107 3.893 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 11.102 1.022 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.008 3.992 5 N -0.825 5.825 6 C 0.124 3.876 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.704 3.296 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.191 1.191 15 S 2.791 3.209 16 O -0.982 6.982 17 O -0.956 6.956 18 N -0.844 5.844 19 C -0.036 4.036 20 C -0.028 4.028 21 O -0.294 6.294 22 C -0.023 4.023 23 H 0.119 0.881 24 C 0.019 3.981 25 F -0.193 7.193 26 C -0.020 4.020 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.118 11.094 0.270 11.154 hybrid contribution 0.618 -0.463 0.870 1.163 sum 1.736 10.631 1.140 10.832 Atomic orbital electron populations 1.22707 0.82296 1.02493 0.99119 1.88104 1.18495 1.26960 1.95154 1.23085 0.95300 0.85240 0.99874 1.21077 0.91467 0.97539 0.89070 1.57716 1.78186 1.19580 1.26995 1.19297 0.98170 0.71270 0.98877 1.21520 1.02822 0.92061 1.41755 0.92204 1.24885 0.96575 0.96842 0.95092 1.69926 1.34261 1.03280 1.44705 0.86904 0.84355 0.78225 0.80121 1.20255 1.21249 1.19066 1.01960 0.72358 0.72512 0.74047 1.93525 1.74165 1.43269 1.87221 1.93577 1.84799 1.70745 1.46519 1.58365 1.24900 1.34679 1.66502 1.22000 0.98564 0.88005 0.95015 1.22917 0.90715 0.95423 0.93745 1.87889 1.34135 1.36412 1.70957 1.23346 0.94215 0.87578 0.97114 0.88110 1.21941 0.89292 0.98351 0.88471 1.92770 1.71330 1.90358 1.64811 1.21801 0.91064 0.94492 0.94599 0.94763 0.94611 0.89802 0.93125 0.93319 0.89077 0.90543 0.92413 0.93657 0.92587 0.90801 0.88919 0.88149 0.92119 0.88788 0.90286 0.91112 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.63 9.02 -35.23 -0.32 -6.94 16 3 C 0.04 0.69 6.28 37.16 0.23 0.92 16 4 C 0.14 2.24 5.79 -4.04 -0.02 2.22 16 5 N -0.98 -19.43 2.81 -115.66 -0.33 -19.76 16 6 C 0.25 5.89 5.27 -5.19 -0.03 5.86 16 7 C -0.54 -13.39 9.18 -34.44 -0.32 -13.71 16 8 H 0.06 1.41 5.72 -52.48 -0.30 1.11 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.88 -24.64 13.29 55.43 0.74 -23.91 16 11 Si 0.88 20.25 29.54 -169.99 -5.02 15.23 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 S 2.78 53.35 6.07 -107.50 -0.65 52.70 16 16 O -1.00 -19.14 15.91 -57.17 -0.91 -20.05 16 17 O -0.97 -21.86 15.49 -57.17 -0.89 -22.75 16 18 N -1.01 -16.40 3.40 -113.06 -0.38 -16.79 16 19 C 0.09 1.18 6.57 -3.53 -0.02 1.16 16 20 C 0.05 0.65 6.99 37.31 0.26 0.91 16 21 O -0.38 -5.84 10.38 -35.23 -0.37 -6.21 16 22 C 0.04 0.60 3.14 -26.57 -0.08 0.52 16 23 H 0.10 1.93 5.78 -51.93 -0.30 1.63 16 24 C 0.07 1.12 7.21 37.16 0.27 1.39 16 25 F -0.21 -3.79 17.35 2.25 0.04 -3.75 16 26 C 0.11 1.71 5.86 -3.53 -0.02 1.69 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 33 H 0.08 1.04 7.61 -51.93 -0.40 0.64 16 34 H 0.06 1.51 6.60 -51.93 -0.34 1.16 16 35 H 0.05 1.21 6.91 -51.93 -0.36 0.85 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.10 7.25 -51.93 -0.38 0.72 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.11 1.95 7.25 -51.93 -0.38 1.57 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -32.30 370.43 -7.88 -40.18 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.66 Total: 2.25 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 1.28 Total: 4.21 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.03 Total: -60.45 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.48 Total: -55.95 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.65 Total: 52.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.30 -7.88 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416573197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.622 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds