Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00405 * 2 1 4 4 C 1.53007 * 109.47460 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46919 * 64.99196 * 4 3 2 6 6 C 1.46500 * 120.00269 * 275.00129 * 5 4 3 7 7 C 1.50701 * 109.46932 * 275.00265 * 6 5 4 8 8 H 1.07997 * 120.00453 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99385 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00363 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46984 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.46946 * 119.99936 * 11 9 7 14 14 H 1.48496 * 109.46853 * 239.99997 * 11 9 7 15 15 S 1.65607 * 119.99471 * 95.00683 * 5 4 3 16 16 O 1.42102 * 106.40096 * 336.45589 * 15 5 4 17 17 O 1.42099 * 106.39735 * 203.53718 * 15 5 4 18 18 N 1.65598 * 107.21863 * 89.99631 * 15 5 4 19 19 C 1.47148 * 120.98443 * 269.97706 * 18 15 5 20 20 C 1.53297 * 108.38428 * 230.55827 * 19 18 15 21 21 O 1.42963 * 109.22213 * 307.69818 * 20 19 18 22 22 C 1.42955 * 114.16797 * 62.57976 * 21 20 19 23 23 H 1.08995 * 109.51564 * 57.34576 * 22 21 20 24 24 C 1.53003 * 109.51067 * 177.49968 * 22 21 20 25 25 F 1.39907 * 109.46699 * 294.74158 * 24 22 21 26 26 C 1.47156 * 120.97991 * 89.99730 * 18 15 5 27 27 H 1.09000 * 109.47024 * 300.00228 * 1 2 3 28 28 H 1.09000 * 109.46967 * 60.00366 * 1 2 3 29 29 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47756 * 59.99782 * 3 2 1 31 31 H 1.08999 * 109.46836 * 299.99825 * 3 2 1 32 32 H 1.09005 * 109.46426 * 304.99798 * 4 3 2 33 33 H 1.08997 * 109.47117 * 184.99985 * 4 3 2 34 34 H 1.08995 * 109.46989 * 35.00391 * 6 5 4 35 35 H 1.09001 * 109.46865 * 155.00218 * 6 5 4 36 36 H 0.97002 * 119.99888 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.67946 * 350.27549 * 19 18 15 38 38 H 1.08994 * 109.68347 * 110.79829 * 19 18 15 39 39 H 1.09004 * 109.51370 * 67.62117 * 20 19 18 40 40 H 1.08996 * 109.51403 * 187.77028 * 20 19 18 41 41 H 1.08989 * 109.47352 * 54.74264 * 24 22 21 42 42 H 1.09001 * 109.47097 * 174.75081 * 24 22 21 43 43 H 1.09001 * 109.68077 * 249.16639 * 26 18 15 44 44 H 1.08998 * 109.68021 * 9.72367 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5641 -1.2527 6 6 4.0004 -0.8953 -1.3780 7 6 5.2993 -1.4249 -0.8273 8 1 6.0330 -0.7427 -0.4239 9 6 5.5511 -2.7804 -0.8385 10 7 4.6580 -3.6111 -1.3302 11 14 7.1610 -3.4370 -0.1552 12 1 7.9892 -2.3056 0.3340 13 1 6.8794 -4.3669 0.9678 14 1 7.8943 -4.1603 -1.2249 15 16 4.4455 1.5127 -2.5263 16 8 3.8179 2.7739 -2.3402 17 8 4.2758 0.7253 -3.6970 18 7 6.0734 1.7727 -2.3695 19 6 6.5870 2.9259 -1.6134 20 6 7.6132 3.6578 -2.4859 21 8 8.5865 2.7210 -2.9539 22 6 8.0529 1.6903 -3.7884 23 1 7.5493 2.1391 -4.6445 24 6 9.1887 0.7891 -4.2769 25 9 10.0431 1.5238 -5.1062 26 6 7.0492 0.8576 -2.9827 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8462 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9786 2.1763 0.0889 34 1 3.1678 -1.3221 -0.8188 35 1 3.9118 -1.1713 -2.4288 36 1 4.8354 -4.5648 -1.3384 37 1 5.7658 3.5998 -1.3691 38 1 7.0639 2.5806 -0.6962 39 1 7.1080 4.1139 -3.3373 40 1 8.1060 4.4313 -1.8970 41 1 9.7483 0.4132 -3.4205 42 1 8.7727 -0.0493 -4.8356 43 1 7.5731 0.3040 -2.2035 44 1 6.5341 0.1618 -3.6450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416573210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -208.029474 kcal Electronic energy + Delta-G solvation = -30308.108678 eV Core-core repulsion = 25916.443042 eV Total energy + Delta-G solvation = -4391.665636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.54396 -39.23811 -37.76962 -36.83176 -35.40619 -35.30757 -34.63088 -32.60191 -32.48892 -29.53075 -28.18273 -26.79967 -25.69999 -25.45002 -23.11448 -22.84840 -21.78667 -21.08442 -18.59249 -17.50581 -17.11418 -16.97296 -16.44807 -16.23213 -15.92628 -15.81233 -15.60019 -15.28590 -15.07018 -14.88323 -14.56427 -14.50748 -14.29217 -13.96433 -13.61310 -13.36314 -12.69349 -12.43426 -12.30852 -12.09387 -11.94935 -11.86619 -11.74322 -11.68991 -11.28808 -11.27130 -11.14682 -11.12762 -11.09560 -10.91630 -10.71516 -10.42820 -10.39315 -10.13641 -10.06471 -9.76109 -9.31513 -8.69301 -8.46447 -8.04230 -6.08632 -4.14731 1.09727 3.22696 3.26382 3.32237 3.34381 3.56943 3.95022 4.14209 4.36193 4.42375 4.75210 4.84421 4.89834 4.94845 5.04983 5.14393 5.25372 5.27120 5.32502 5.35793 5.40553 5.46628 5.54158 5.59219 5.63225 5.66587 5.74028 5.83162 5.84443 5.92430 6.15414 6.16881 6.28696 6.48049 6.68848 7.06112 7.46215 7.49442 7.52557 7.74135 7.90021 8.19856 8.90600 9.50254 10.99239 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009697 B = 0.005672 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.793539 B = 4935.609399 C = 6959.460134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.982 5.982 6 C 0.245 3.755 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 S 2.782 3.218 16 O -0.998 6.998 17 O -0.973 6.973 18 N -1.006 6.006 19 C 0.084 3.916 20 C 0.054 3.946 21 O -0.372 6.372 22 C 0.047 3.953 23 H 0.073 0.927 24 C 0.072 3.928 25 F -0.214 7.214 26 C 0.100 3.900 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 11.557 0.633 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.823 5.823 6 C 0.123 3.877 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 S 2.792 3.208 16 O -0.982 6.982 17 O -0.957 6.957 18 N -0.844 5.844 19 C -0.042 4.042 20 C -0.024 4.024 21 O -0.291 6.291 22 C -0.013 4.013 23 H 0.090 0.910 24 C 0.016 3.984 25 F -0.195 7.195 26 C -0.026 4.026 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.221 11.532 -0.072 11.597 hybrid contribution 0.588 -0.407 0.759 1.043 sum 1.809 11.125 0.687 11.292 Atomic orbital electron populations 1.22707 0.82302 1.02497 0.99122 1.88101 1.18495 1.26984 1.95152 1.23094 0.95336 0.85230 0.99869 1.21076 0.91386 0.97613 0.89056 1.57677 1.78125 1.19531 1.26982 1.19309 0.98224 0.71301 0.98874 1.21593 1.02804 0.92140 1.41166 0.92102 1.24927 0.96701 0.96890 0.95280 1.69952 1.34283 1.03145 1.45120 0.86605 0.83799 0.79087 0.78863 1.19739 1.21015 1.20921 1.01907 0.72380 0.72505 0.74031 1.93519 1.74158 1.43293 1.87274 1.93570 1.84786 1.70759 1.46606 1.58297 1.24887 1.34829 1.66379 1.22063 0.98863 0.87974 0.95328 1.22899 0.90648 0.91160 0.97707 1.87939 1.33794 1.39802 1.67534 1.23125 0.94599 0.89920 0.93654 0.90953 1.22000 0.89719 0.92703 0.93953 1.92764 1.72575 1.79866 1.74303 1.21910 0.91062 0.91545 0.98128 0.94761 0.94608 0.89799 0.93102 0.93341 0.89076 0.90456 0.92436 0.93677 0.92749 0.88379 0.90546 0.92725 0.87753 0.89446 0.88492 0.89532 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.68 9.02 -35.23 -0.32 -6.99 16 3 C 0.04 0.69 6.28 37.16 0.23 0.92 16 4 C 0.14 2.27 5.79 -4.04 -0.02 2.25 16 5 N -0.98 -19.67 2.81 -115.66 -0.33 -19.99 16 6 C 0.24 5.97 5.27 -5.19 -0.03 5.94 16 7 C -0.54 -13.58 9.38 -34.44 -0.32 -13.90 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 11 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 S 2.78 53.39 6.12 -107.50 -0.66 52.73 16 16 O -1.00 -19.02 15.73 -57.17 -0.90 -19.92 16 17 O -0.97 -21.83 15.31 -57.17 -0.88 -22.71 16 18 N -1.01 -16.33 3.40 -113.06 -0.38 -16.71 16 19 C 0.08 1.09 6.71 -3.53 -0.02 1.06 16 20 C 0.05 0.64 6.99 37.31 0.26 0.90 16 21 O -0.37 -5.25 10.38 -35.23 -0.37 -5.62 16 22 C 0.05 0.65 3.14 -26.58 -0.08 0.57 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 C 0.07 0.88 7.21 37.16 0.27 1.15 16 25 F -0.21 -3.02 17.35 2.25 0.04 -2.98 16 26 C 0.10 1.58 6.00 -3.53 -0.02 1.56 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 34 H 0.06 1.52 6.60 -51.93 -0.34 1.17 16 35 H 0.05 1.22 6.91 -51.93 -0.36 0.86 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.10 1.17 6.94 -51.93 -0.36 0.81 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.99 8.14 -51.94 -0.42 0.57 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.11 1.85 6.94 -51.93 -0.36 1.49 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -32.66 374.45 -8.01 -40.67 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.86 Total: 1.37 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 1.28 Total: 3.60 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.03 Total: -60.91 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -2.46 Total: -55.24 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.66 Total: 52.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.66 -8.01 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416573210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.359 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds