Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99768 * 2 1 4 4 C 1.50706 * 109.46949 * 275.00438 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 S 1.65594 * 120.00146 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40753 * 23.53418 * 12 2 1 14 14 O 1.42099 * 106.40296 * 156.45801 * 12 2 1 15 15 N 1.65606 * 107.21631 * 269.99304 * 12 2 1 16 16 C 1.47424 * 125.64916 * 269.69242 * 15 12 2 17 17 C 1.54688 * 104.94221 * 204.07273 * 16 15 12 18 18 H 1.09000 * 110.84832 * 81.33669 * 17 16 15 19 19 O 1.42896 * 111.10543 * 205.10969 * 17 16 15 20 20 C 1.55167 * 101.67804 * 323.27917 * 17 16 15 21 21 C 1.47025 * 125.64731 * 89.99991 * 15 12 2 22 22 H 1.09000 * 109.87836 * 59.48631 * 21 15 12 23 23 C 1.50700 * 109.88286 * 298.47807 * 21 15 12 24 24 C 1.38237 * 119.99914 * 319.72948 * 23 21 15 25 25 C 1.38235 * 119.99632 * 179.76885 * 24 23 21 26 26 C 1.38237 * 120.00192 * 0.50036 * 25 24 23 27 27 C 1.38231 * 119.99683 * 359.74813 * 26 25 24 28 28 C 1.38230 * 120.00436 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47298 * 90.00028 * 1 2 3 30 30 H 1.09005 * 109.46612 * 209.99569 * 1 2 3 31 31 H 1.09000 * 109.47360 * 329.99153 * 1 2 3 32 32 H 1.09000 * 109.47175 * 155.00464 * 3 2 1 33 33 H 1.09001 * 109.47297 * 34.99971 * 3 2 1 34 34 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 35 35 H 1.08995 * 110.36780 * 323.00330 * 16 15 12 36 36 H 1.09003 * 110.36255 * 85.32595 * 16 15 12 37 37 H 0.96703 * 114.00092 * 292.37178 * 19 17 16 38 38 H 1.09002 * 110.71697 * 276.97228 * 20 17 16 39 39 H 1.08993 * 110.71807 * 153.69681 * 20 17 16 40 40 H 1.07993 * 119.99914 * 359.97438 * 24 23 21 41 41 H 1.08006 * 119.99707 * 180.22750 * 25 24 23 42 42 H 1.07996 * 119.99938 * 179.73053 * 26 25 24 43 43 H 1.08006 * 119.99605 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.00081 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4155 5 1 1.9323 1.1915 -2.2336 6 6 2.9995 2.9510 -1.6663 7 7 3.5023 3.6475 -0.6705 8 14 3.1772 3.5674 -3.4207 9 1 2.5299 2.6075 -4.3506 10 1 2.5255 4.8958 -3.5471 11 1 4.6180 3.6887 -3.7592 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5454 14 8 3.5759 -1.1565 -0.5450 15 7 2.5383 -1.8592 1.5810 16 6 3.7061 -1.4860 2.3999 17 6 3.7838 -2.5697 3.5010 18 1 4.2728 -3.4689 3.1264 19 8 4.4497 -2.0745 4.6642 20 6 2.2820 -2.8325 3.7895 21 6 1.6305 -2.6765 2.3993 22 1 1.4981 -3.6561 1.9399 23 6 0.2968 -1.9871 2.5292 24 6 0.2414 -0.6183 2.7140 25 6 -0.9822 0.0147 2.8283 26 6 -2.1501 -0.7224 2.7683 27 6 -2.0944 -2.0919 2.5886 28 6 -0.8711 -2.7243 2.4696 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 3.1858 1.1178 0.4342 33 1 1.6501 2.0043 0.5894 34 1 3.9657 4.4812 -0.8471 35 1 4.6123 -1.4943 1.7943 36 1 3.5569 -0.5035 2.8477 37 1 5.3909 -1.8954 4.5324 38 1 1.8877 -2.0920 4.4855 39 1 2.1340 -3.8417 4.1737 40 1 1.1539 -0.0430 2.7656 41 1 -1.0256 1.0847 2.9690 42 1 -3.1058 -0.2284 2.8620 43 1 -3.0069 -2.6679 2.5421 44 1 -0.8277 -3.7944 2.3296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416597172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -107.550805 kcal Electronic energy + Delta-G solvation = -29692.840990 eV Core-core repulsion = 25736.301660 eV Total energy + Delta-G solvation = -3956.539330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02498 -39.26769 -38.33496 -37.21862 -36.92605 -36.69156 -34.54315 -32.67326 -31.73836 -31.04690 -29.65492 -28.60502 -26.81443 -24.38104 -24.17425 -23.41387 -22.46354 -21.82582 -19.91291 -19.13118 -18.76333 -18.44127 -18.14028 -17.44269 -17.30378 -16.69170 -16.31890 -15.97253 -15.47257 -15.38529 -15.13993 -15.01656 -14.75435 -14.51294 -14.20914 -14.13502 -14.05721 -13.96948 -13.60124 -13.39734 -13.24356 -13.20355 -13.03020 -12.94530 -12.63775 -12.58805 -12.50462 -12.42274 -12.06686 -11.99128 -11.83488 -11.74812 -11.64534 -11.06121 -10.63082 -10.25304 -9.85342 -9.64317 -9.54980 -8.23228 -6.35006 -0.47688 0.43807 0.57371 1.35807 1.38109 1.49957 1.93125 2.36918 2.50753 2.90398 3.07137 3.12426 3.23802 3.55774 3.72906 3.86398 3.98418 4.03883 4.12648 4.20945 4.32487 4.39912 4.42933 4.58382 4.64567 4.70655 4.73159 4.74433 4.83585 4.88792 4.96183 5.01668 5.09618 5.12810 5.17226 5.24259 5.30471 5.45188 5.63850 5.66401 5.70485 5.76260 5.90251 6.07961 6.16134 6.72717 6.84899 7.33866 8.84411 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.005010 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.649092 B = 5587.239525 C = 6633.468229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.995 5.995 3 C 0.278 3.722 4 C -0.549 4.549 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.268 1.268 11 H -0.277 1.277 12 S 2.804 3.196 13 O -0.999 6.999 14 O -1.005 7.005 15 N -1.008 6.008 16 C 0.079 3.921 17 C 0.107 3.893 18 H 0.096 0.904 19 O -0.566 6.566 20 C -0.100 4.100 21 C 0.188 3.812 22 H 0.099 0.901 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.014 0.986 33 H 0.028 0.972 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -13.498 13.169 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.836 5.836 3 C 0.155 3.845 4 C -0.589 4.589 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.193 1.193 11 H -0.203 1.203 12 S 2.815 3.185 13 O -0.984 6.984 14 O -0.989 6.989 15 N -0.848 5.848 16 C -0.047 4.047 17 C 0.046 3.954 18 H 0.114 0.886 19 O -0.373 6.373 20 C -0.139 4.139 21 C 0.083 3.917 22 H 0.117 0.883 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.304 -13.851 12.601 20.099 hybrid contribution 0.885 1.284 -1.128 1.924 sum -6.419 -12.567 11.473 18.187 Atomic orbital electron populations 1.21619 0.78447 1.02978 1.00888 1.57510 1.15306 1.22020 1.88787 1.18572 0.90107 0.80036 0.95807 1.21831 1.36339 1.06601 0.94094 0.93423 1.25709 0.94696 0.96676 1.01420 1.70004 1.37804 1.15733 1.32639 0.85553 0.78116 0.78429 0.79896 1.19688 1.19317 1.20308 1.01013 0.72251 0.72451 0.72785 1.93499 1.67275 1.60491 1.77097 1.93554 1.42844 1.85559 1.76979 1.59019 1.30425 1.65859 1.29536 1.22847 0.87868 1.00163 0.93839 1.22842 0.94067 0.94405 0.84050 0.88622 1.86464 1.28739 1.87719 1.34418 1.22643 0.92318 1.04880 0.94063 1.20434 0.86019 0.93311 0.91985 0.88267 1.20288 0.95449 0.94360 1.03209 1.21025 0.98321 0.94295 0.98776 1.21301 0.92511 1.00505 1.00431 1.21461 0.98636 0.94498 0.98705 1.21438 0.98223 0.94944 0.99542 1.21265 0.91616 1.00875 0.98803 0.94672 0.90338 0.90538 0.96836 0.95430 0.92313 0.90430 0.91602 0.75016 0.90065 0.86647 0.87702 0.85644 0.83886 0.83396 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.94 7.96 127.77 1.02 4.96 16 2 N -1.00 -43.23 2.74 -543.20 -1.49 -44.72 16 3 C 0.28 14.41 5.12 85.63 0.44 14.85 16 4 C -0.55 -31.87 9.38 25.60 0.24 -31.63 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.84 5.46 84.66 0.46 1.30 16 7 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 8 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 S 2.80 117.69 5.97 -56.49 -0.34 117.35 16 13 O -1.00 -43.01 16.79 -128.00 -2.15 -45.16 16 14 O -1.01 -50.62 16.43 -128.00 -2.10 -52.72 16 15 N -1.01 -31.43 2.74 -488.54 -1.34 -32.77 16 16 C 0.08 2.16 6.83 86.78 0.59 2.75 16 17 C 0.11 2.09 4.41 31.91 0.14 2.23 16 18 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 19 O -0.57 -10.47 13.47 -148.98 -2.01 -12.48 16 20 C -0.10 -1.90 6.20 31.79 0.20 -1.70 16 21 C 0.19 4.55 3.03 44.59 0.13 4.69 16 22 H 0.10 2.18 8.01 -2.39 -0.02 2.16 16 23 C -0.13 -3.27 3.40 -19.87 -0.07 -3.33 16 24 C -0.11 -2.86 6.12 22.27 0.14 -2.73 16 25 C -0.13 -3.09 8.00 22.27 0.18 -2.91 16 26 C -0.12 -2.25 10.04 22.27 0.22 -2.02 16 27 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 28 C -0.11 -2.24 9.43 22.27 0.21 -2.03 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 2.60 4.65 -2.38 -0.01 2.59 16 31 H 0.08 2.64 6.95 -2.39 -0.02 2.62 16 32 H 0.01 0.76 7.61 -2.39 -0.02 0.74 16 33 H 0.03 1.45 7.96 -2.39 -0.02 1.43 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.08 2.23 7.78 -2.39 -0.02 2.21 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.40 4.28 9.12 -74.06 -0.68 3.61 16 38 H 0.08 1.70 7.77 -2.39 -0.02 1.68 16 39 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 3.23 7.74 -2.91 -0.02 3.21 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.14 2.33 8.04 -2.91 -0.02 2.30 16 Total: -1.00 -75.49 366.22 -2.65 -78.14 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.34 Total: 16.72 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.13 Total: -17.64 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -2.54 Total: -131.53 kcal Atomic # 8 Polarization: -104.10 SS G_CDS: -6.26 Total: -110.36 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 117.69 SS G_CDS: -0.34 Total: 117.35 kcal Total: -75.49 -2.65 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416597172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.410 kcal (2) G-P(sol) polarization free energy of solvation -75.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds