Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50695 * 109.47115 * 84.99992 * 3 2 1 5 5 H 1.07995 * 120.00143 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99827 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99998 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99994 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47150 * 120.00254 * 8 6 4 11 11 H 1.48499 * 109.47304 * 240.00318 * 8 6 4 12 12 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40010 * 203.53824 * 12 2 1 14 14 O 1.42094 * 106.39890 * 336.45188 * 12 2 1 15 15 N 1.65596 * 107.21969 * 89.99706 * 12 2 1 16 16 C 1.47424 * 125.64778 * 269.69175 * 15 12 2 17 17 C 1.55121 * 104.72347 * 155.81853 * 16 15 12 18 18 H 1.09005 * 110.94088 * 155.29076 * 17 16 15 19 19 O 1.42897 * 111.19481 * 279.18956 * 17 16 15 20 20 C 1.55160 * 101.48767 * 37.29392 * 17 16 15 21 21 C 1.47020 * 125.65103 * 90.00236 * 15 12 2 22 22 H 1.09000 * 109.88048 * 300.43777 * 21 15 12 23 23 C 1.50700 * 109.88529 * 61.44545 * 21 15 12 24 24 C 1.38236 * 119.99770 * 39.72633 * 23 21 15 25 25 C 1.38234 * 120.00451 * 179.76411 * 24 23 21 26 26 C 1.38245 * 119.99575 * 0.51262 * 25 24 23 27 27 C 1.38239 * 119.99836 * 359.74646 * 26 25 24 28 28 C 1.38235 * 120.00020 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.08999 * 109.47026 * 205.00489 * 3 2 1 33 33 H 1.09005 * 109.46953 * 325.00115 * 3 2 1 34 34 H 0.97008 * 119.99992 * 179.97438 * 7 6 4 35 35 H 1.09002 * 110.36286 * 274.74869 * 16 15 12 36 36 H 1.09002 * 110.36783 * 37.06627 * 16 15 12 37 37 H 0.96705 * 114.00308 * 292.18844 * 19 17 16 38 38 H 1.08995 * 110.72282 * 205.96568 * 20 17 16 39 39 H 1.09006 * 110.71512 * 82.69681 * 20 17 16 40 40 H 1.08002 * 119.99929 * 0.02562 * 24 23 21 41 41 H 1.07994 * 120.00478 * 180.22978 * 25 24 23 42 42 H 1.07992 * 120.00231 * 179.72243 * 26 25 24 43 43 H 1.07996 * 119.99989 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.99937 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4154 5 1 1.9289 1.1935 2.2331 6 6 3.0007 2.9503 1.6663 7 7 3.5034 3.6468 0.6705 8 14 3.1797 3.5660 3.4209 9 1 2.5322 2.6062 4.3508 10 1 4.6208 3.6862 3.7587 11 1 2.5290 4.8948 3.5481 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1570 0.5439 14 8 1.4114 -2.4067 0.5435 15 7 2.5381 -1.8581 -1.5826 16 6 1.6308 -2.6823 -2.4016 17 6 1.9451 -2.2783 -3.8660 18 1 1.6822 -3.0799 -4.5563 19 8 1.2820 -1.0631 -4.2203 20 6 3.4824 -2.0763 -3.8076 21 6 3.6995 -1.4801 -2.4009 22 1 3.7699 -0.3943 -2.4654 23 6 4.9594 -2.0399 -1.7923 24 6 4.9583 -3.3103 -1.2473 25 6 6.1151 -3.8258 -0.6934 26 6 7.2704 -3.0668 -0.6750 27 6 7.2701 -1.7943 -1.2152 28 6 6.1147 -1.2811 -1.7743 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1857 1.1177 -0.4344 33 1 1.6501 2.0043 -0.5895 34 1 3.9669 4.4805 0.8471 35 1 1.8358 -3.7414 -2.2455 36 1 0.5919 -2.4566 -2.1609 37 1 0.3193 -1.1401 -4.2693 38 1 3.8091 -1.3773 -4.5775 39 1 4.0006 -3.0302 -3.9064 40 1 4.0547 -3.9018 -1.2581 41 1 6.1153 -4.8197 -0.2710 42 1 8.1731 -3.4677 -0.2382 43 1 8.1724 -1.2011 -1.2004 44 1 6.1143 -0.2868 -2.1959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416597180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -82.955437 kcal Electronic energy + Delta-G solvation = -29470.568445 eV Core-core repulsion = 25515.095651 eV Total energy + Delta-G solvation = -3955.472794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84783 -38.16356 -36.56020 -35.45773 -35.41570 -35.06569 -32.39931 -31.52544 -30.61185 -30.08847 -27.77369 -27.60602 -25.02990 -23.18807 -22.38250 -22.15865 -21.48362 -20.70802 -18.52613 -17.66221 -17.36493 -16.87378 -16.39703 -16.26378 -15.42024 -15.26307 -14.80173 -14.71178 -14.37123 -14.32275 -13.73703 -13.49572 -13.34159 -13.14274 -13.08432 -12.69294 -12.57233 -12.22787 -12.13530 -12.09593 -11.75084 -11.57401 -11.36486 -11.25337 -11.09799 -11.05492 -11.03584 -10.88301 -10.75077 -10.65374 -10.48998 -10.17427 -9.99247 -9.70486 -8.91881 -8.63393 -8.43418 -8.38507 -8.00392 -6.03408 -4.07017 1.18022 1.60249 1.68215 3.32450 3.39962 3.45278 3.52365 3.96992 4.01643 4.17638 4.40227 4.46975 4.58702 4.74646 5.01050 5.08202 5.12685 5.21632 5.28616 5.31398 5.42891 5.45854 5.55285 5.62216 5.68998 5.73739 5.78324 5.83206 5.99327 6.02676 6.14557 6.20739 6.30457 6.36281 6.47686 6.65721 6.69810 6.75089 6.90526 7.25753 7.28071 7.44892 7.54514 7.65431 7.94172 8.24148 8.95290 9.57877 11.05125 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005388 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.072955 B = 5195.648532 C = 6450.481928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.994 5.994 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 S 2.788 3.212 13 O -0.945 6.945 14 O -0.998 6.998 15 N -1.010 6.010 16 C 0.093 3.907 17 C 0.092 3.908 18 H 0.076 0.924 19 O -0.551 6.551 20 C -0.110 4.110 21 C 0.197 3.803 22 H 0.089 0.911 23 C -0.086 4.086 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.094 4.094 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.378 0.622 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -13.949 -12.079 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.837 5.837 3 C 0.138 3.862 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.210 1.210 12 S 2.798 3.202 13 O -0.929 6.929 14 O -0.982 6.982 15 N -0.847 5.847 16 C -0.034 4.034 17 C 0.032 3.968 18 H 0.093 0.907 19 O -0.356 6.356 20 C -0.149 4.149 21 C 0.091 3.909 22 H 0.107 0.893 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.113 4.113 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.225 0.775 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.420 -14.010 -11.263 17.981 hybrid contribution -0.605 0.522 0.856 1.171 sum -0.185 -13.488 -10.407 17.037 Atomic orbital electron populations 1.21328 0.80411 1.03261 1.00078 1.57690 1.14204 1.23468 1.88293 1.19018 0.90907 0.78738 0.97535 1.21518 1.35924 1.06234 0.92913 0.92281 1.24915 0.95135 0.96507 0.97384 1.69933 1.37417 1.15267 1.30778 0.86485 0.78004 0.78487 0.84742 1.19684 1.20795 1.20951 1.01843 0.73567 0.72771 0.72054 1.93661 1.39836 1.84628 1.74738 1.93509 1.67716 1.60721 1.76277 1.59482 1.29074 1.65119 1.31020 1.22673 0.94160 0.95211 0.91343 1.22982 0.93401 0.86974 0.93459 0.90659 1.86574 1.23719 1.33537 1.91783 1.22735 0.93675 1.02463 0.95984 1.20093 0.82208 0.99361 0.89281 0.89325 1.20089 0.94962 0.94576 0.99154 1.20851 0.97827 0.95354 0.98587 1.21030 0.93174 0.99809 0.99986 1.21072 0.98047 0.94912 0.99990 1.21073 0.98182 0.95657 0.98529 1.20974 0.92384 0.99133 0.98781 0.94364 0.90410 0.91896 0.94575 0.94857 0.92801 0.90916 0.90627 0.77458 0.89047 0.89145 0.86825 0.86500 0.86511 0.86188 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.68 59.85 0.64 2.36 16 2 N -0.99 -21.60 3.23 -123.05 -0.40 -21.99 16 3 C 0.26 6.71 5.08 -5.19 -0.03 6.69 16 4 C -0.53 -15.14 9.38 -34.44 -0.32 -15.46 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 S 2.79 58.30 6.23 -107.50 -0.67 57.63 16 13 O -0.94 -23.27 15.21 -57.18 -0.87 -24.14 16 14 O -1.00 -21.63 16.32 -57.18 -0.93 -22.56 16 15 N -1.01 -16.12 2.72 -105.52 -0.29 -16.41 16 16 C 0.09 1.09 6.73 -2.41 -0.02 1.07 16 17 C 0.09 0.89 4.43 -24.47 -0.11 0.79 16 18 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 19 O -0.55 -5.99 13.48 -35.23 -0.47 -6.47 16 20 C -0.11 -1.19 6.19 -24.90 -0.15 -1.34 16 21 C 0.20 2.95 3.26 -68.11 -0.22 2.73 16 22 H 0.09 1.48 8.01 -51.93 -0.42 1.06 16 23 C -0.09 -1.36 3.40 -104.62 -0.36 -1.72 16 24 C -0.11 -1.63 8.97 -39.58 -0.36 -1.99 16 25 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 26 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 27 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 28 C -0.09 -1.48 9.67 -39.58 -0.38 -1.87 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 32 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 33 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.38 2.53 9.12 45.56 0.42 2.95 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.83 7.79 -51.93 -0.40 0.43 16 40 H 0.11 1.59 7.73 -52.49 -0.41 1.18 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -36.38 377.24 -10.59 -46.97 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.76 Total: 3.02 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.60 Total: -13.30 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.05 Total: -64.08 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -2.28 Total: -53.16 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.67 Total: 57.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.38 -10.59 -46.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416597180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.987 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds