Wall clock time and date at job start Sat Apr 11 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50695 * 109.47115 * 84.99992 * 3 2 1 5 5 H 1.07995 * 120.00143 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99827 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99998 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99994 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47150 * 120.00254 * 8 6 4 11 11 H 1.48499 * 109.47304 * 240.00318 * 8 6 4 12 12 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40010 * 203.53824 * 12 2 1 14 14 O 1.42094 * 106.39890 * 336.45188 * 12 2 1 15 15 N 1.65596 * 107.21969 * 89.99706 * 12 2 1 16 16 C 1.47424 * 125.64778 * 269.69175 * 15 12 2 17 17 C 1.55121 * 104.72347 * 155.81853 * 16 15 12 18 18 H 1.09005 * 110.94088 * 155.29076 * 17 16 15 19 19 O 1.42897 * 111.19481 * 279.18956 * 17 16 15 20 20 C 1.55160 * 101.48767 * 37.29392 * 17 16 15 21 21 C 1.47020 * 125.65103 * 90.00236 * 15 12 2 22 22 H 1.09000 * 109.88048 * 300.43777 * 21 15 12 23 23 C 1.50700 * 109.88529 * 61.44545 * 21 15 12 24 24 C 1.38236 * 119.99770 * 39.72633 * 23 21 15 25 25 C 1.38234 * 120.00451 * 179.76411 * 24 23 21 26 26 C 1.38245 * 119.99575 * 0.51262 * 25 24 23 27 27 C 1.38239 * 119.99836 * 359.74646 * 26 25 24 28 28 C 1.38235 * 120.00020 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.08999 * 109.47026 * 205.00489 * 3 2 1 33 33 H 1.09005 * 109.46953 * 325.00115 * 3 2 1 34 34 H 0.97008 * 119.99992 * 179.97438 * 7 6 4 35 35 H 1.09002 * 110.36286 * 274.74869 * 16 15 12 36 36 H 1.09002 * 110.36783 * 37.06627 * 16 15 12 37 37 H 0.96705 * 114.00308 * 292.18844 * 19 17 16 38 38 H 1.08995 * 110.72282 * 205.96568 * 20 17 16 39 39 H 1.09006 * 110.71512 * 82.69681 * 20 17 16 40 40 H 1.08002 * 119.99929 * 0.02562 * 24 23 21 41 41 H 1.07994 * 120.00478 * 180.22978 * 25 24 23 42 42 H 1.07992 * 120.00231 * 179.72243 * 26 25 24 43 43 H 1.07996 * 119.99989 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.99937 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4154 5 1 1.9289 1.1935 2.2331 6 6 3.0007 2.9503 1.6663 7 7 3.5034 3.6468 0.6705 8 14 3.1797 3.5660 3.4209 9 1 2.5322 2.6062 4.3508 10 1 4.6208 3.6862 3.7587 11 1 2.5290 4.8948 3.5481 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1570 0.5439 14 8 1.4114 -2.4067 0.5435 15 7 2.5381 -1.8581 -1.5826 16 6 1.6308 -2.6823 -2.4016 17 6 1.9451 -2.2783 -3.8660 18 1 1.6822 -3.0799 -4.5563 19 8 1.2820 -1.0631 -4.2203 20 6 3.4824 -2.0763 -3.8076 21 6 3.6995 -1.4801 -2.4009 22 1 3.7699 -0.3943 -2.4654 23 6 4.9594 -2.0399 -1.7923 24 6 4.9583 -3.3103 -1.2473 25 6 6.1151 -3.8258 -0.6934 26 6 7.2704 -3.0668 -0.6750 27 6 7.2701 -1.7943 -1.2152 28 6 6.1147 -1.2811 -1.7743 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1857 1.1177 -0.4344 33 1 1.6501 2.0043 -0.5895 34 1 3.9669 4.4805 0.8471 35 1 1.8358 -3.7414 -2.2455 36 1 0.5919 -2.4566 -2.1609 37 1 0.3193 -1.1401 -4.2693 38 1 3.8091 -1.3773 -4.5775 39 1 4.0006 -3.0302 -3.9064 40 1 4.0547 -3.9018 -1.2581 41 1 6.1153 -4.8197 -0.2710 42 1 8.1731 -3.4677 -0.2382 43 1 8.1724 -1.2011 -1.2004 44 1 6.1143 -0.2868 -2.1959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416597180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:31 Heat of formation + Delta-G solvation = -110.312457 kcal Electronic energy + Delta-G solvation = -29471.754735 eV Core-core repulsion = 25515.095651 eV Total energy + Delta-G solvation = -3956.659084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90583 -39.16344 -38.27376 -37.24088 -36.82981 -36.36738 -34.53563 -32.62857 -31.72001 -31.08629 -29.70861 -28.66168 -26.81713 -24.40486 -24.09175 -23.43958 -22.43041 -21.80829 -19.91332 -19.08479 -18.63304 -18.35879 -18.23844 -17.60454 -17.11063 -16.45296 -16.33355 -15.88297 -15.67117 -15.37838 -15.17131 -14.94378 -14.75789 -14.37199 -14.22307 -14.10706 -14.02082 -13.68476 -13.54017 -13.34249 -13.22513 -13.07433 -13.04990 -12.96790 -12.76343 -12.52465 -12.49700 -12.43100 -12.06602 -11.95906 -11.87912 -11.76922 -11.74092 -10.99985 -10.63514 -10.09754 -9.80857 -9.77203 -9.51915 -8.23239 -6.35641 -0.40836 0.47363 0.54148 1.34695 1.37240 1.48989 2.02748 2.36807 2.56195 2.90471 3.06995 3.14872 3.43907 3.55015 3.68714 3.87082 4.00033 4.05766 4.15239 4.21644 4.26776 4.34938 4.56645 4.64211 4.65514 4.67804 4.73984 4.77546 4.82616 4.93297 4.99774 5.03871 5.08833 5.12470 5.14731 5.22058 5.34180 5.49381 5.59322 5.63488 5.66518 5.74884 5.92470 6.07136 6.16315 6.72137 6.99307 7.33132 8.84539 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005388 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.072955 B = 5195.648532 C = 6450.481928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.005 6.005 3 C 0.280 3.720 4 C -0.548 4.548 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.266 1.266 12 S 2.801 3.199 13 O -0.991 6.991 14 O -1.008 7.008 15 N -1.006 6.006 16 C 0.078 3.922 17 C 0.104 3.896 18 H 0.121 0.879 19 O -0.575 6.575 20 C -0.103 4.103 21 C 0.193 3.807 22 H 0.057 0.943 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.010 0.990 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.396 0.604 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -15.587 -12.684 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.847 5.847 3 C 0.156 3.844 4 C -0.588 4.588 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.191 1.191 12 S 2.812 3.188 13 O -0.975 6.975 14 O -0.992 6.992 15 N -0.846 5.846 16 C -0.047 4.047 17 C 0.043 3.957 18 H 0.138 0.862 19 O -0.383 6.383 20 C -0.142 4.142 21 C 0.087 3.913 22 H 0.075 0.925 23 C -0.100 4.100 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.142 4.142 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.200 -15.655 -11.868 19.646 hybrid contribution -0.437 0.985 0.983 1.458 sum -0.637 -14.671 -10.885 18.279 Atomic orbital electron populations 1.21554 0.78295 1.03368 1.02419 1.57629 1.15729 1.22204 1.89088 1.18494 0.89972 0.80142 0.95760 1.21805 1.36359 1.06679 0.93923 0.93339 1.25740 0.94679 0.96674 1.01507 1.70022 1.37735 1.15691 1.32707 0.85546 0.78120 0.78510 0.79787 1.19554 1.20391 1.19138 1.01113 0.72420 0.72332 0.72949 1.93595 1.41912 1.85162 1.76816 1.93482 1.67768 1.60596 1.77390 1.59014 1.30358 1.65211 1.29973 1.23158 0.93809 0.95688 0.92029 1.23059 0.92086 0.87706 0.92800 0.86177 1.86540 1.25516 1.34606 1.91685 1.22767 0.95320 1.03194 0.92895 1.20192 0.81721 0.97928 0.91507 0.92499 1.20236 0.95117 0.95086 0.99593 1.21067 0.98794 0.95307 0.98991 1.21439 0.92872 1.01028 0.99305 1.21453 0.99188 0.94479 0.99425 1.21389 0.98401 0.96488 0.98206 1.21171 0.93510 0.99353 1.00180 0.90883 0.91166 0.90911 0.97180 0.95934 0.92331 0.88772 0.89692 0.75395 0.88748 0.87044 0.85866 0.83882 0.83652 0.84478 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.15 10.68 127.77 1.36 4.51 16 2 N -1.01 -44.49 3.23 -543.22 -1.75 -46.24 16 3 C 0.28 15.04 5.08 85.63 0.43 15.47 16 4 C -0.55 -32.42 9.38 25.60 0.24 -32.18 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.80 5.46 84.65 0.46 1.26 16 7 N -0.92 -55.50 13.29 21.45 0.28 -55.22 16 8 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 9 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 S 2.80 118.64 6.23 -56.49 -0.35 118.29 16 13 O -0.99 -50.63 15.21 -128.00 -1.95 -52.58 16 14 O -1.01 -43.22 16.32 -128.00 -2.09 -45.31 16 15 N -1.01 -31.66 2.72 -487.74 -1.33 -32.99 16 16 C 0.08 1.63 6.73 86.93 0.59 2.22 16 17 C 0.10 1.69 4.43 32.06 0.14 1.83 16 18 H 0.12 1.00 8.14 -2.38 -0.02 0.99 16 19 O -0.58 -11.21 13.48 -148.98 -2.01 -13.21 16 20 C -0.10 -2.06 6.19 31.78 0.20 -1.87 16 21 C 0.19 5.85 3.26 44.59 0.15 6.00 16 22 H 0.06 2.05 8.01 -2.39 -0.02 2.03 16 23 C -0.10 -3.18 3.40 -19.87 -0.07 -3.25 16 24 C -0.12 -3.66 8.97 22.27 0.20 -3.46 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 26 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 27 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 28 C -0.12 -4.07 9.67 22.27 0.22 -3.85 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.07 2.41 7.02 -2.38 -0.02 2.39 16 32 H 0.01 0.59 7.61 -2.39 -0.02 0.58 16 33 H 0.02 1.24 8.11 -2.38 -0.02 1.22 16 34 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.40 4.22 9.12 -74.05 -0.68 3.55 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 1.77 7.79 -2.38 -0.02 1.75 16 40 H 0.12 3.28 7.73 -2.91 -0.02 3.26 16 41 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.12 3.80 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -80.70 377.24 -2.25 -82.95 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.33 Total: 19.47 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.59 Total: -23.14 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -2.79 Total: -134.45 kcal Atomic # 8 Polarization: -105.05 SS G_CDS: -6.04 Total: -111.10 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 118.64 SS G_CDS: -0.35 Total: 118.29 kcal Total: -80.70 -2.25 -82.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416597180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.363 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds