Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50703 * 109.46907 * 275.00275 * 3 2 1 5 5 H 1.08001 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99970 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00266 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47101 * 119.99857 * 8 6 4 11 11 H 1.48500 * 109.47126 * 240.00184 * 8 6 4 12 12 S 1.65595 * 119.99850 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40149 * 203.53728 * 12 2 1 14 14 O 1.42098 * 106.40317 * 336.45602 * 12 2 1 15 15 N 1.65606 * 107.22013 * 89.99911 * 12 2 1 16 16 C 1.47424 * 125.64489 * 269.69192 * 15 12 2 17 17 C 1.55126 * 104.72192 * 155.81755 * 16 15 12 18 18 H 1.09003 * 111.22310 * 279.17126 * 17 16 15 19 19 O 1.42899 * 110.90613 * 155.27591 * 17 16 15 20 20 C 1.55158 * 101.48612 * 37.29366 * 17 16 15 21 21 C 1.47020 * 125.65043 * 89.99799 * 15 12 2 22 22 H 1.09001 * 109.87967 * 300.59691 * 21 15 12 23 23 C 1.50694 * 109.88083 * 61.60575 * 21 15 12 24 24 C 1.38235 * 120.00228 * 39.72623 * 23 21 15 25 25 C 1.38232 * 119.99762 * 179.78462 * 24 23 21 26 26 C 1.38235 * 120.00297 * 0.44354 * 25 24 23 27 27 C 1.38229 * 119.99803 * 359.81280 * 26 25 24 28 28 C 1.38235 * 120.00461 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47325 * 269.99908 * 1 2 3 30 30 H 1.09004 * 109.47539 * 29.99621 * 1 2 3 31 31 H 1.08996 * 109.47424 * 150.00237 * 1 2 3 32 32 H 1.09001 * 109.47378 * 34.99890 * 3 2 1 33 33 H 1.09002 * 109.46925 * 155.00631 * 3 2 1 34 34 H 0.97003 * 120.00349 * 180.02562 * 7 6 4 35 35 H 1.09003 * 110.36497 * 274.74842 * 16 15 12 36 36 H 1.09004 * 110.36993 * 37.06579 * 16 15 12 37 37 H 0.96695 * 114.00532 * 67.97217 * 19 17 16 38 38 H 1.09005 * 110.71434 * 205.97245 * 20 17 16 39 39 H 1.08996 * 110.87393 * 82.77233 * 20 17 16 40 40 H 1.08001 * 120.00090 * 359.97438 * 24 23 21 41 41 H 1.08009 * 120.00230 * 180.27730 * 25 24 23 42 42 H 1.08006 * 119.99958 * 179.83154 * 26 25 24 43 43 H 1.08007 * 119.99989 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00449 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9287 1.1934 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5041 3.6464 -0.6709 8 14 3.1794 3.5661 -3.4210 9 1 2.5308 2.6068 -4.3508 10 1 2.5287 4.8947 -3.5481 11 1 4.6205 3.6862 -3.7589 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1570 0.5439 14 8 1.4113 -2.4067 0.5434 15 7 2.5380 -1.8580 -1.5827 16 6 1.6307 -2.6822 -2.4017 17 6 1.9450 -2.2782 -3.8661 18 1 1.4392 -1.3514 -4.1369 19 8 1.6004 -3.3296 -4.7703 20 6 3.4823 -2.0763 -3.8077 21 6 3.6995 -1.4800 -2.4010 22 1 3.7715 -0.3942 -2.4631 23 6 4.9588 -2.0431 -1.7944 24 6 4.9562 -3.3146 -1.2522 25 6 6.1126 -3.8328 -0.6999 26 6 7.2692 -3.0759 -0.6814 27 6 7.2704 -1.8024 -1.2189 28 6 6.1152 -1.2858 -1.7753 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6501 2.0043 0.5894 33 1 3.1858 1.1176 0.4342 34 1 3.9676 4.4801 -0.8474 35 1 1.8356 -3.7414 -2.2456 36 1 0.5918 -2.4565 -2.1610 37 1 0.6499 -3.4926 -4.8402 38 1 3.8089 -1.3771 -4.5776 39 1 4.0031 -3.0285 -3.9076 40 1 4.0515 -3.9044 -1.2629 41 1 6.1118 -4.8280 -0.2802 42 1 8.1720 -3.4797 -0.2474 43 1 8.1739 -1.2108 -1.2041 44 1 6.1162 -0.2910 -2.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416597182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -87.320574 kcal Electronic energy + Delta-G solvation = -29772.673701 eV Core-core repulsion = 25817.011620 eV Total energy + Delta-G solvation = -3955.662081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71816 -38.04196 -36.64078 -35.66658 -35.51309 -35.18965 -32.54253 -31.45325 -30.54445 -29.86565 -27.87169 -27.38469 -25.12586 -23.10526 -22.42720 -22.12780 -21.38485 -20.64616 -18.43359 -17.70801 -17.35664 -16.82606 -16.40147 -16.25269 -15.76067 -15.25127 -14.87789 -14.46162 -14.35330 -14.04532 -13.73755 -13.51773 -13.30834 -13.26351 -13.02960 -12.85302 -12.44305 -12.37681 -12.23025 -12.07880 -11.71771 -11.51212 -11.42079 -11.31376 -11.21128 -11.15148 -10.98986 -10.81906 -10.69665 -10.61038 -10.56409 -10.14893 -10.06698 -9.80792 -8.86360 -8.56539 -8.55821 -8.33277 -8.07921 -6.16762 -4.23846 1.16855 1.67077 1.75283 3.18046 3.26661 3.28025 3.40865 3.96892 4.16679 4.21275 4.29844 4.44721 4.73931 5.00418 5.06206 5.12465 5.17756 5.20717 5.27216 5.38535 5.39759 5.56695 5.63211 5.70063 5.82150 5.87283 5.93527 5.94964 6.01803 6.14234 6.22506 6.27186 6.29362 6.44314 6.46620 6.67178 6.76569 6.81468 7.00744 7.29817 7.33006 7.39026 7.53813 7.59575 7.79785 8.09594 8.80959 9.41980 10.91142 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.006071 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.907090 B = 4610.676505 C = 5018.843302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.996 5.996 3 C 0.243 3.757 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.281 1.281 12 S 2.795 3.205 13 O -0.958 6.958 14 O -0.998 6.998 15 N -1.005 6.005 16 C 0.096 3.904 17 C 0.092 3.908 18 H 0.080 0.920 19 O -0.559 6.559 20 C -0.109 4.109 21 C 0.191 3.809 22 H 0.108 0.892 23 C -0.081 4.081 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.093 4.093 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.379 0.621 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -11.766 -5.519 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.207 1.207 12 S 2.804 3.196 13 O -0.942 6.942 14 O -0.982 6.982 15 N -0.843 5.843 16 C -0.031 4.031 17 C 0.032 3.968 18 H 0.098 0.902 19 O -0.364 6.364 20 C -0.148 4.148 21 C 0.085 3.915 22 H 0.126 0.874 23 C -0.083 4.083 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.111 4.111 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.247 -12.069 -4.672 12.944 hybrid contribution -0.716 0.863 -1.049 1.536 sum -0.469 -11.206 -5.721 12.590 Atomic orbital electron populations 1.21223 0.80275 1.01928 1.00664 1.57740 1.14155 1.23645 1.88313 1.19236 0.92240 0.78803 0.97586 1.21556 1.36598 1.06834 0.92874 0.91917 1.24951 0.95222 0.96509 0.97096 1.69942 1.36577 1.15109 1.30828 0.86591 0.78045 0.78980 0.84729 1.19605 1.20923 1.20731 1.01591 0.73252 0.72614 0.72123 1.93618 1.40066 1.84965 1.75563 1.93534 1.67641 1.60592 1.76432 1.59172 1.29316 1.64993 1.30770 1.22587 0.93661 0.95545 0.91261 1.23079 0.96396 0.89973 0.87350 0.90236 1.86499 1.29123 1.55965 1.64782 1.22632 0.94215 1.02362 0.95550 1.20261 0.82108 1.00573 0.88578 0.87427 1.20069 0.95023 0.94376 0.98810 1.20878 0.97887 0.95323 0.98519 1.21015 0.93199 0.99724 1.00226 1.21048 0.97941 0.94941 1.00245 1.21064 0.98140 0.95661 0.98794 1.21018 0.92279 0.99286 0.98537 0.93717 0.90738 0.93165 0.94480 0.92999 0.92589 0.91004 0.90939 0.77426 0.89507 0.89655 0.86846 0.86589 0.86604 0.86268 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.31 59.85 0.62 2.43 16 2 N -1.00 -20.62 3.23 -123.05 -0.40 -21.02 16 3 C 0.24 5.95 5.41 -5.19 -0.03 5.92 16 4 C -0.54 -13.50 8.92 -34.44 -0.31 -13.81 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -24.62 13.29 55.43 0.74 -23.89 16 8 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 S 2.79 56.78 6.25 -107.50 -0.67 56.11 16 13 O -0.96 -22.35 14.81 -57.17 -0.85 -23.20 16 14 O -1.00 -20.94 16.79 -57.17 -0.96 -21.90 16 15 N -1.00 -16.99 2.72 -105.51 -0.29 -17.27 16 16 C 0.10 1.29 6.72 -2.41 -0.02 1.28 16 17 C 0.09 1.14 4.44 -24.46 -0.11 1.03 16 18 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 19 O -0.56 -6.10 13.47 -35.23 -0.47 -6.57 16 20 C -0.11 -1.47 6.19 -24.90 -0.15 -1.62 16 21 C 0.19 3.15 3.26 -68.11 -0.22 2.93 16 22 H 0.11 1.99 7.54 -51.93 -0.39 1.60 16 23 C -0.08 -1.38 3.40 -104.62 -0.36 -1.74 16 24 C -0.11 -1.75 8.99 -39.58 -0.36 -2.10 16 25 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 27 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 28 C -0.09 -1.55 9.68 -39.58 -0.38 -1.94 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 32 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.38 2.44 9.12 45.56 0.42 2.85 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 40 H 0.11 1.74 7.72 -52.49 -0.41 1.34 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 44 H 0.13 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -32.50 376.41 -10.59 -43.09 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.74 Total: 6.78 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.60 Total: -12.56 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.05 Total: -62.18 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -2.28 Total: -51.67 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 56.78 SS G_CDS: -0.67 Total: 56.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.50 -10.59 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416597182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.230 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds