Wall clock time and date at job start Sat Apr 11 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50703 * 109.46907 * 275.00275 * 3 2 1 5 5 H 1.08001 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99970 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00266 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47101 * 119.99857 * 8 6 4 11 11 H 1.48500 * 109.47126 * 240.00184 * 8 6 4 12 12 S 1.65595 * 119.99850 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40149 * 203.53728 * 12 2 1 14 14 O 1.42098 * 106.40317 * 336.45602 * 12 2 1 15 15 N 1.65606 * 107.22013 * 89.99911 * 12 2 1 16 16 C 1.47424 * 125.64489 * 269.69192 * 15 12 2 17 17 C 1.55126 * 104.72192 * 155.81755 * 16 15 12 18 18 H 1.09003 * 111.22310 * 279.17126 * 17 16 15 19 19 O 1.42899 * 110.90613 * 155.27591 * 17 16 15 20 20 C 1.55158 * 101.48612 * 37.29366 * 17 16 15 21 21 C 1.47020 * 125.65043 * 89.99799 * 15 12 2 22 22 H 1.09001 * 109.87967 * 300.59691 * 21 15 12 23 23 C 1.50694 * 109.88083 * 61.60575 * 21 15 12 24 24 C 1.38235 * 120.00228 * 39.72623 * 23 21 15 25 25 C 1.38232 * 119.99762 * 179.78462 * 24 23 21 26 26 C 1.38235 * 120.00297 * 0.44354 * 25 24 23 27 27 C 1.38229 * 119.99803 * 359.81280 * 26 25 24 28 28 C 1.38235 * 120.00461 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47325 * 269.99908 * 1 2 3 30 30 H 1.09004 * 109.47539 * 29.99621 * 1 2 3 31 31 H 1.08996 * 109.47424 * 150.00237 * 1 2 3 32 32 H 1.09001 * 109.47378 * 34.99890 * 3 2 1 33 33 H 1.09002 * 109.46925 * 155.00631 * 3 2 1 34 34 H 0.97003 * 120.00349 * 180.02562 * 7 6 4 35 35 H 1.09003 * 110.36497 * 274.74842 * 16 15 12 36 36 H 1.09004 * 110.36993 * 37.06579 * 16 15 12 37 37 H 0.96695 * 114.00532 * 67.97217 * 19 17 16 38 38 H 1.09005 * 110.71434 * 205.97245 * 20 17 16 39 39 H 1.08996 * 110.87393 * 82.77233 * 20 17 16 40 40 H 1.08001 * 120.00090 * 359.97438 * 24 23 21 41 41 H 1.08009 * 120.00230 * 180.27730 * 25 24 23 42 42 H 1.08006 * 119.99958 * 179.83154 * 26 25 24 43 43 H 1.08007 * 119.99989 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00449 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9287 1.1934 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5041 3.6464 -0.6709 8 14 3.1794 3.5661 -3.4210 9 1 2.5308 2.6068 -4.3508 10 1 2.5287 4.8947 -3.5481 11 1 4.6205 3.6862 -3.7589 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1570 0.5439 14 8 1.4113 -2.4067 0.5434 15 7 2.5380 -1.8580 -1.5827 16 6 1.6307 -2.6822 -2.4017 17 6 1.9450 -2.2782 -3.8661 18 1 1.4392 -1.3514 -4.1369 19 8 1.6004 -3.3296 -4.7703 20 6 3.4823 -2.0763 -3.8077 21 6 3.6995 -1.4800 -2.4010 22 1 3.7715 -0.3942 -2.4631 23 6 4.9588 -2.0431 -1.7944 24 6 4.9562 -3.3146 -1.2522 25 6 6.1126 -3.8328 -0.6999 26 6 7.2692 -3.0759 -0.6814 27 6 7.2704 -1.8024 -1.2189 28 6 6.1152 -1.2858 -1.7753 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6501 2.0043 0.5894 33 1 3.1858 1.1176 0.4342 34 1 3.9676 4.4801 -0.8474 35 1 1.8356 -3.7414 -2.2456 36 1 0.5918 -2.4565 -2.1610 37 1 0.6499 -3.4926 -4.8402 38 1 3.8089 -1.3771 -4.5776 39 1 4.0031 -3.0285 -3.9076 40 1 4.0515 -3.9044 -1.2629 41 1 6.1118 -4.8280 -0.2802 42 1 8.1720 -3.4797 -0.2474 43 1 8.1739 -1.2108 -1.2041 44 1 6.1162 -0.2910 -2.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416597182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:33 Heat of formation + Delta-G solvation = -110.655270 kcal Electronic energy + Delta-G solvation = -29773.685570 eV Core-core repulsion = 25817.011620 eV Total energy + Delta-G solvation = -3956.673949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88579 -39.13371 -38.30918 -37.23350 -36.89021 -36.66122 -34.48201 -32.64236 -31.71921 -30.99921 -29.68515 -28.54029 -26.79488 -24.41084 -24.07483 -23.41725 -22.45292 -21.86516 -19.89818 -18.94104 -18.82873 -18.35062 -18.16947 -17.46614 -17.20684 -16.69539 -16.27220 -15.97399 -15.47567 -15.38242 -15.05843 -14.86555 -14.67217 -14.63375 -14.19648 -14.02829 -13.99607 -13.91097 -13.59043 -13.41307 -13.30992 -13.13464 -13.01619 -12.91931 -12.68317 -12.56533 -12.48146 -12.41991 -12.08171 -11.94392 -11.85549 -11.69500 -11.61325 -11.01820 -10.58865 -10.14722 -9.80651 -9.76694 -9.51344 -8.16111 -6.29952 -0.40696 0.47967 0.54826 1.42570 1.44876 1.55317 1.93221 2.42159 2.52646 2.89610 3.14338 3.17206 3.24477 3.62195 3.75366 3.87904 3.98767 4.03580 4.15117 4.17540 4.27748 4.43792 4.44971 4.58389 4.65048 4.66622 4.73695 4.76584 4.88478 4.89053 5.00716 5.04162 5.10658 5.15593 5.23282 5.25520 5.36358 5.49918 5.59738 5.63877 5.73303 5.78504 5.92191 6.09923 6.17018 6.81787 6.90479 7.40128 8.92474 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.006071 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.907090 B = 4610.676505 C = 5018.843302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.004 6.004 3 C 0.259 3.741 4 C -0.535 4.535 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.929 5.929 8 Si 0.953 3.047 9 H -0.252 1.252 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.807 3.193 13 O -0.995 6.995 14 O -1.005 7.005 15 N -1.003 6.003 16 C 0.088 3.912 17 C 0.107 3.893 18 H 0.085 0.915 19 O -0.564 6.564 20 C -0.104 4.104 21 C 0.191 3.809 22 H 0.080 0.920 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.400 0.600 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -13.378 -7.389 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.845 5.845 3 C 0.135 3.865 4 C -0.574 4.574 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.568 5.568 8 Si 0.778 3.222 9 H -0.175 1.175 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.817 3.183 13 O -0.979 6.979 14 O -0.989 6.989 15 N -0.843 5.843 16 C -0.038 4.038 17 C 0.046 3.954 18 H 0.103 0.897 19 O -0.371 6.371 20 C -0.143 4.143 21 C 0.084 3.916 22 H 0.098 0.902 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.464 -13.712 -6.545 15.201 hybrid contribution -0.523 1.272 -0.429 1.441 sum -0.987 -12.440 -6.974 14.295 Atomic orbital electron populations 1.21483 0.78103 1.03453 1.01880 1.57662 1.15676 1.22280 1.88895 1.18775 0.90684 0.79921 0.97081 1.21791 1.35804 1.06629 0.93205 0.90740 1.25788 0.94946 0.96848 1.01024 1.70079 1.37860 1.15694 1.33193 0.85574 0.77921 0.78519 0.80184 1.17530 1.20974 1.20799 1.00980 0.72317 0.72288 0.72713 1.93566 1.41888 1.85395 1.77098 1.93514 1.67665 1.60495 1.77244 1.58835 1.30263 1.65110 1.30075 1.22904 0.93797 0.95497 0.91562 1.22849 0.95243 0.90579 0.86723 0.89670 1.86465 1.31376 1.55313 1.63974 1.22595 0.95599 1.02468 0.93626 1.20246 0.81960 0.99170 0.90181 0.90194 1.20194 0.95195 0.94957 0.99445 1.21051 0.98814 0.95267 0.99193 1.21424 0.92848 1.00986 0.99443 1.21447 0.99049 0.94406 0.99437 1.21394 0.98306 0.96484 0.98209 1.21182 0.93414 0.99378 1.00012 0.92771 0.90370 0.90447 0.96399 0.96567 0.92649 0.90111 0.89288 0.74945 0.88606 0.89368 0.86452 0.83919 0.83412 0.84286 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.18 10.31 127.77 1.32 4.49 16 2 N -1.00 -41.73 3.23 -543.22 -1.75 -43.48 16 3 C 0.26 13.08 5.41 85.63 0.46 13.54 16 4 C -0.54 -27.04 8.92 25.60 0.23 -26.82 16 5 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 6 C 0.01 0.71 5.46 84.66 0.46 1.17 16 7 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 8 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 9 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 S 2.81 114.27 6.25 -56.49 -0.35 113.91 16 13 O -1.00 -47.95 14.81 -128.00 -1.90 -49.84 16 14 O -1.00 -41.26 16.79 -128.00 -2.15 -43.41 16 15 N -1.00 -33.15 2.72 -487.73 -1.32 -34.48 16 16 C 0.09 2.16 6.72 86.93 0.58 2.74 16 17 C 0.11 2.34 4.44 32.06 0.14 2.48 16 18 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 19 O -0.56 -10.39 13.47 -148.98 -2.01 -12.40 16 20 C -0.10 -2.66 6.19 31.78 0.20 -2.46 16 21 C 0.19 6.28 3.26 44.59 0.15 6.42 16 22 H 0.08 3.05 7.54 -2.39 -0.02 3.03 16 23 C -0.10 -3.31 3.40 -19.87 -0.07 -3.37 16 24 C -0.12 -3.99 8.99 22.27 0.20 -3.79 16 25 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 27 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 28 C -0.12 -4.17 9.68 22.27 0.22 -3.95 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 31 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 32 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 33 H 0.02 0.93 6.92 -2.39 -0.02 0.92 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.40 3.63 9.12 -74.06 -0.68 2.95 16 38 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.09 2.21 7.77 -2.39 -0.02 2.19 16 40 H 0.12 3.52 7.72 -2.91 -0.02 3.50 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.12 4.05 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -70.98 376.41 -2.28 -73.26 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.33 Total: 26.28 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.56 Total: -19.59 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -2.79 Total: -130.70 kcal Atomic # 8 Polarization: -99.60 SS G_CDS: -6.05 Total: -105.65 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: 114.27 SS G_CDS: -0.35 Total: 113.91 kcal Total: -70.98 -2.28 -73.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416597182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.394 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds