Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35922 * 117.00052 * 2 1 4 4 C 1.38746 * 120.04140 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95886 * 179.97438 * 4 3 2 6 6 C 1.38397 * 120.04143 * 359.97438 * 5 4 3 7 7 Cl 1.73595 * 119.95544 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.08260 * 359.72447 * 6 5 4 9 9 C 1.38166 * 120.04557 * 0.55431 * 8 6 5 10 10 C 1.50693 * 120.02470 * 179.72299 * 9 8 6 11 11 N 1.46512 * 109.47085 * 259.72612 * 10 9 8 12 12 C 1.46500 * 119.99631 * 269.99848 * 11 10 9 13 13 C 1.34769 * 119.99934 * 89.99840 * 11 10 9 14 14 O 1.21285 * 120.00184 * 0.02562 * 13 11 10 15 15 C 1.50703 * 119.99927 * 180.02562 * 13 11 10 16 16 H 1.09002 * 109.47152 * 319.99914 * 15 13 11 17 17 N 1.46896 * 109.46997 * 199.99852 * 15 13 11 18 18 C 1.53000 * 109.46912 * 80.00142 * 15 13 11 19 19 C 1.53006 * 109.46846 * 185.00257 * 18 15 13 20 20 C 1.50701 * 109.47024 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99776 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99939 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99808 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46940 * 60.00461 * 24 22 20 26 26 H 1.48507 * 109.47004 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47465 * 299.99899 * 24 22 20 28 28 H 1.09002 * 109.47108 * 300.00410 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00040 * 1 2 3 30 30 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02386 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.98407 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.97958 * 180.27576 * 8 6 5 34 34 H 1.08996 * 109.47572 * 139.72841 * 10 9 8 35 35 H 1.08999 * 109.47480 * 19.72220 * 10 9 8 36 36 H 1.08994 * 109.47150 * 269.99833 * 12 11 10 37 37 H 1.08999 * 109.47181 * 30.00095 * 12 11 10 38 38 H 1.09003 * 109.46677 * 149.99729 * 12 11 10 39 39 H 1.00907 * 110.99811 * 176.04301 * 17 15 13 40 40 H 1.00900 * 111.00550 * 300.00040 * 17 15 13 41 41 H 1.09002 * 109.47069 * 304.99691 * 18 15 13 42 42 H 1.08991 * 109.47625 * 65.00010 * 18 15 13 43 43 H 1.09002 * 109.46824 * 299.99583 * 19 18 15 44 44 H 1.09001 * 109.47241 * 59.99481 * 19 18 15 45 45 H 0.96998 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9201 3.6050 0.0011 6 6 3.3022 3.6764 0.0016 7 17 4.0903 5.2232 0.0030 8 6 4.0565 2.5168 0.0074 9 6 3.4311 1.2847 0.0010 10 6 4.2533 0.0218 0.0010 11 7 4.3193 -0.5179 -1.3595 12 6 3.3050 -1.4695 -1.8199 13 6 5.3129 -0.1390 -2.1873 14 8 6.1529 0.6485 -1.8059 15 6 5.3805 -0.6937 -3.5869 16 1 5.1185 -1.7517 -3.5714 17 7 6.7433 -0.5343 -4.1115 18 6 4.3974 0.0621 -4.4830 19 6 4.3744 -0.5811 -5.8711 20 6 3.4056 0.1630 -6.7536 21 1 2.8611 1.0102 -6.3635 22 6 3.2153 -0.2372 -8.0592 23 7 3.8795 -1.2679 -8.5346 24 14 2.0149 0.6856 -9.1533 25 1 2.4418 2.1030 -9.2711 26 1 1.9935 0.0619 -10.5009 27 1 0.6559 0.6257 -8.5580 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3200 0.0005 32 1 1.3330 4.5114 0.0019 33 1 5.1350 2.5744 0.0123 34 1 3.7915 -0.7124 0.6611 35 1 5.2607 0.2440 0.3529 36 1 3.6318 -2.4851 -1.5968 37 1 2.3623 -1.2708 -1.3100 38 1 3.1663 -1.3605 -2.8955 39 1 6.8312 -0.9563 -5.0239 40 1 7.0099 0.4385 -4.1359 41 1 3.3998 0.0184 -4.0458 42 1 4.7107 1.1024 -4.5698 43 1 5.3720 -0.5374 -6.3083 44 1 4.0611 -1.6215 -5.7843 45 1 3.7453 -1.5497 -9.4530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424058865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -59.832073 kcal Electronic energy + Delta-G solvation = -27959.600127 eV Core-core repulsion = 24003.086330 eV Total energy + Delta-G solvation = -3956.513796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74128 -39.56419 -37.89685 -36.40249 -35.62360 -35.32524 -32.86836 -32.11463 -30.19194 -29.87181 -28.04408 -27.27045 -26.64933 -25.48545 -23.52315 -22.43852 -21.79815 -20.40724 -18.89567 -18.25541 -17.35210 -16.65359 -16.51384 -16.41962 -16.15172 -15.61713 -15.13597 -14.71125 -14.53977 -14.42947 -14.14599 -14.03358 -13.56899 -13.46446 -13.12846 -12.92633 -12.63566 -12.51439 -12.45147 -12.11022 -12.07084 -11.94706 -11.70530 -11.61096 -11.36665 -11.02195 -10.93644 -10.89562 -10.85378 -10.69973 -9.94420 -9.88322 -9.36568 -9.25399 -9.04795 -8.57985 -8.43210 -8.28446 -8.11679 -6.08078 -4.11071 0.94672 1.03387 2.05216 2.92043 2.99282 3.10158 3.27889 3.32909 3.35385 3.55602 4.39162 4.41576 4.48270 4.74580 4.81097 4.88343 4.94515 4.99491 5.19225 5.23021 5.26390 5.28194 5.28989 5.42063 5.57301 5.61501 5.65128 5.72695 5.81427 5.86954 5.92697 6.01654 6.09007 6.32617 6.39651 6.55360 6.63303 6.89528 7.02431 7.43729 7.52576 7.62011 7.68981 7.89040 7.95053 8.31975 8.49651 8.94532 9.53636 11.02798 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.003365 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.704236 B = 8319.958421 C = 8579.229698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.146 3.854 4 C -0.200 4.200 5 C -0.069 4.069 6 C -0.072 4.072 7 Cl -0.072 7.072 8 C -0.047 4.047 9 C -0.124 4.124 10 C 0.167 3.833 11 N -0.611 5.611 12 C 0.063 3.937 13 C 0.527 3.473 14 O -0.537 6.537 15 C 0.075 3.925 16 H 0.096 0.904 17 N -0.831 5.831 18 C -0.138 4.138 19 C 0.026 3.974 20 C -0.523 4.523 21 H 0.053 0.947 22 C 0.060 3.940 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.353 0.647 40 H 0.345 0.655 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 3.362 21.114 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.100 3.900 4 C -0.219 4.219 5 C -0.088 4.088 6 C -0.099 4.099 7 Cl -0.044 7.044 8 C -0.066 4.066 9 C -0.126 4.126 10 C 0.044 3.956 11 N -0.345 5.345 12 C -0.079 4.079 13 C 0.316 3.684 14 O -0.413 6.413 15 C -0.040 4.040 16 H 0.114 0.886 17 N -0.362 5.362 18 C -0.177 4.177 19 C -0.011 4.011 20 C -0.561 4.561 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.632 3.146 21.774 22.709 hybrid contribution -1.592 1.352 -1.572 2.614 sum -7.223 4.498 20.201 21.920 Atomic orbital electron populations 1.23128 0.78133 1.04338 1.01544 1.86071 1.21558 1.26374 1.88117 1.18864 0.91625 0.84457 0.95053 1.21133 1.00298 0.91531 1.08909 1.20822 0.92385 0.98074 0.97470 1.20764 0.92784 0.86890 1.09485 1.98363 1.80714 1.28112 1.97181 1.20923 1.00830 0.89346 0.95536 1.19556 0.90786 0.96145 1.06112 1.20090 0.99838 0.91481 0.84199 1.47822 1.28039 1.45638 1.13016 1.22160 0.91971 0.91736 1.02073 1.20925 0.79713 0.80668 0.87141 1.90602 1.39402 1.34653 1.76614 1.21484 0.91085 1.00930 0.90476 0.88634 1.58757 1.22338 1.22843 1.32304 1.22410 0.97508 0.99463 0.98353 1.19093 0.97323 0.95892 0.88836 1.21133 1.24176 1.14524 0.96299 0.92873 1.24992 0.96074 0.95079 0.98034 1.69937 1.41585 1.25774 1.15891 0.86666 0.81578 0.80117 0.79711 1.20235 1.21187 1.20263 0.92611 0.92251 0.87892 0.84558 0.84795 0.83802 0.89327 0.89025 0.92836 0.89696 0.89934 0.83165 0.84204 0.92461 0.92788 0.96406 0.96366 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.00 7.06 -19.49 -0.14 -3.14 16 3 C 0.15 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.20 -2.00 9.04 -39.44 -0.36 -2.36 16 5 C -0.07 -0.73 9.82 -39.57 -0.39 -1.12 16 6 C -0.07 -0.89 6.32 -39.49 -0.25 -1.13 16 7 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 16 8 C -0.05 -0.61 9.45 -39.57 -0.37 -0.99 16 9 C -0.12 -1.54 5.47 -104.48 -0.57 -2.11 16 10 C 0.17 2.04 5.23 -5.19 -0.03 2.02 16 11 N -0.61 -8.61 2.86 -182.95 -0.52 -9.14 16 12 C 0.06 0.77 9.85 59.85 0.59 1.36 16 13 C 0.53 9.07 6.92 -10.99 -0.08 9.00 16 14 O -0.54 -10.46 15.83 5.55 0.09 -10.37 16 15 C 0.08 1.33 2.37 -68.87 -0.16 1.17 16 16 H 0.10 1.61 7.21 -51.93 -0.37 1.24 16 17 N -0.83 -14.78 8.94 -5.65 -0.05 -14.83 16 18 C -0.14 -2.78 4.45 -26.73 -0.12 -2.89 16 19 C 0.03 0.63 4.74 -27.88 -0.13 0.49 16 20 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 21 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 24 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.14 1.02 6.30 -52.49 -0.33 0.68 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.94 8.03 -52.48 -0.42 1.52 16 34 H 0.09 0.90 7.78 -51.93 -0.40 0.50 16 35 H 0.09 1.17 7.28 -51.93 -0.38 0.79 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.93 5.18 -51.93 -0.27 0.66 16 38 H 0.08 1.14 4.83 -51.93 -0.25 0.89 16 39 H 0.35 6.27 7.55 -39.29 -0.30 5.97 16 40 H 0.34 6.24 8.58 -39.29 -0.34 5.90 16 41 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -31.87 380.53 -8.43 -40.29 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.20 Total: 9.95 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.55 Total: -7.17 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.16 Total: -49.20 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.05 Total: -13.50 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.87 -8.43 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424058865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.540 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds