Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35922 * 117.00052 * 2 1 4 4 C 1.38746 * 120.04140 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95886 * 179.97438 * 4 3 2 6 6 C 1.38397 * 120.04143 * 359.97438 * 5 4 3 7 7 Cl 1.73595 * 119.95544 * 180.02562 * 6 5 4 8 8 C 1.38339 * 120.08260 * 359.72447 * 6 5 4 9 9 C 1.38166 * 120.04557 * 0.55431 * 8 6 5 10 10 C 1.50693 * 120.02470 * 179.72299 * 9 8 6 11 11 N 1.46512 * 109.47085 * 259.72612 * 10 9 8 12 12 C 1.46500 * 119.99631 * 269.99848 * 11 10 9 13 13 C 1.34769 * 119.99934 * 89.99840 * 11 10 9 14 14 O 1.21285 * 120.00184 * 0.02562 * 13 11 10 15 15 C 1.50703 * 119.99927 * 180.02562 * 13 11 10 16 16 H 1.09002 * 109.47152 * 319.99914 * 15 13 11 17 17 N 1.46896 * 109.46997 * 199.99852 * 15 13 11 18 18 C 1.53000 * 109.46912 * 80.00142 * 15 13 11 19 19 C 1.53006 * 109.46846 * 185.00257 * 18 15 13 20 20 C 1.50701 * 109.47024 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99776 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99939 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99808 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46940 * 60.00461 * 24 22 20 26 26 H 1.48507 * 109.47004 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47465 * 299.99899 * 24 22 20 28 28 H 1.09002 * 109.47108 * 300.00410 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00040 * 1 2 3 30 30 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02386 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.98407 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.97958 * 180.27576 * 8 6 5 34 34 H 1.08996 * 109.47572 * 139.72841 * 10 9 8 35 35 H 1.08999 * 109.47480 * 19.72220 * 10 9 8 36 36 H 1.08994 * 109.47150 * 269.99833 * 12 11 10 37 37 H 1.08999 * 109.47181 * 30.00095 * 12 11 10 38 38 H 1.09003 * 109.46677 * 149.99729 * 12 11 10 39 39 H 1.00907 * 110.99811 * 176.04301 * 17 15 13 40 40 H 1.00900 * 111.00550 * 300.00040 * 17 15 13 41 41 H 1.09002 * 109.47069 * 304.99691 * 18 15 13 42 42 H 1.08991 * 109.47625 * 65.00010 * 18 15 13 43 43 H 1.09002 * 109.46824 * 299.99583 * 19 18 15 44 44 H 1.09001 * 109.47241 * 59.99481 * 19 18 15 45 45 H 0.96998 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9201 3.6050 0.0011 6 6 3.3022 3.6764 0.0016 7 17 4.0903 5.2232 0.0030 8 6 4.0565 2.5168 0.0074 9 6 3.4311 1.2847 0.0010 10 6 4.2533 0.0218 0.0010 11 7 4.3193 -0.5179 -1.3595 12 6 3.3050 -1.4695 -1.8199 13 6 5.3129 -0.1390 -2.1873 14 8 6.1529 0.6485 -1.8059 15 6 5.3805 -0.6937 -3.5869 16 1 5.1185 -1.7517 -3.5714 17 7 6.7433 -0.5343 -4.1115 18 6 4.3974 0.0621 -4.4830 19 6 4.3744 -0.5811 -5.8711 20 6 3.4056 0.1630 -6.7536 21 1 2.8611 1.0102 -6.3635 22 6 3.2153 -0.2372 -8.0592 23 7 3.8795 -1.2679 -8.5346 24 14 2.0149 0.6856 -9.1533 25 1 2.4418 2.1030 -9.2711 26 1 1.9935 0.0619 -10.5009 27 1 0.6559 0.6257 -8.5580 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3200 0.0005 32 1 1.3330 4.5114 0.0019 33 1 5.1350 2.5744 0.0123 34 1 3.7915 -0.7124 0.6611 35 1 5.2607 0.2440 0.3529 36 1 3.6318 -2.4851 -1.5968 37 1 2.3623 -1.2708 -1.3100 38 1 3.1663 -1.3605 -2.8955 39 1 6.8312 -0.9563 -5.0239 40 1 7.0099 0.4385 -4.1359 41 1 3.3998 0.0184 -4.0458 42 1 4.7107 1.1024 -4.5698 43 1 5.3720 -0.5374 -6.3083 44 1 4.0611 -1.6215 -5.7843 45 1 3.7453 -1.5497 -9.4530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424058865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -79.737756 kcal Electronic energy + Delta-G solvation = -27960.463302 eV Core-core repulsion = 24003.086330 eV Total energy + Delta-G solvation = -3957.376972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65958 -40.75827 -38.69414 -37.39647 -37.06201 -36.57786 -34.85533 -33.06173 -31.69853 -31.01601 -29.00470 -28.22391 -27.76521 -26.96652 -25.11169 -23.25564 -22.86381 -22.07265 -20.15219 -19.11300 -18.73607 -18.21641 -17.53650 -17.37353 -17.27752 -16.64947 -16.45918 -16.18186 -15.79926 -15.58320 -15.48988 -14.96042 -14.93017 -14.57485 -14.37292 -14.14257 -13.97887 -13.71622 -13.57576 -13.41459 -13.19056 -13.02572 -12.80617 -12.77223 -12.65309 -12.54419 -12.49831 -12.19063 -11.81954 -11.77131 -11.70571 -11.60917 -11.31936 -10.72992 -10.55362 -10.07813 -9.73050 -9.62435 -9.11481 -8.21002 -6.31454 0.07709 0.16587 1.15613 1.39188 1.41021 1.48896 1.61832 2.01366 2.26342 2.39810 2.61455 3.12477 3.54205 3.59024 3.72117 3.76488 4.01149 4.08601 4.11469 4.23519 4.28207 4.35391 4.40307 4.46000 4.46666 4.62922 4.66822 4.77682 4.78511 4.81345 4.83846 4.98862 5.04656 5.09179 5.15887 5.20690 5.45862 5.51492 5.56069 5.64473 5.80266 6.05099 6.21133 6.30109 6.38897 6.46928 6.82842 7.18598 7.37455 8.89576 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.003365 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.704236 B = 8319.958421 C = 8579.229698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.316 6.316 3 C 0.146 3.854 4 C -0.197 4.197 5 C -0.068 4.068 6 C -0.088 4.088 7 Cl -0.077 7.077 8 C -0.063 4.063 9 C -0.140 4.140 10 C 0.167 3.833 11 N -0.603 5.603 12 C 0.061 3.939 13 C 0.524 3.476 14 O -0.565 6.565 15 C 0.082 3.918 16 H 0.106 0.894 17 N -0.829 5.829 18 C -0.118 4.118 19 C 0.033 3.967 20 C -0.544 4.544 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.956 3.044 25 H -0.274 1.274 26 H -0.281 1.281 27 H -0.266 1.266 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.352 0.648 40 H 0.343 0.657 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.001 0.999 44 H 0.004 0.996 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 3.269 21.895 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.100 3.900 4 C -0.215 4.215 5 C -0.087 4.087 6 C -0.115 4.115 7 Cl -0.048 7.048 8 C -0.082 4.082 9 C -0.142 4.142 10 C 0.045 3.955 11 N -0.336 5.336 12 C -0.080 4.080 13 C 0.312 3.688 14 O -0.444 6.444 15 C -0.033 4.033 16 H 0.124 0.876 17 N -0.360 5.360 18 C -0.157 4.157 19 C -0.004 4.004 20 C -0.582 4.582 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.781 3.219 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.191 1.191 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.184 0.816 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.167 0.833 40 H 0.155 0.845 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.162 3.037 22.583 24.204 hybrid contribution -0.880 1.333 -1.773 2.386 sum -9.042 4.369 20.810 23.106 Atomic orbital electron populations 1.23431 0.76178 1.06008 1.02418 1.86044 1.23508 1.25601 1.87742 1.18927 0.91273 0.85493 0.94335 1.21477 1.01749 0.90742 1.07562 1.21127 0.91783 0.99357 0.96413 1.20906 0.93591 0.86488 1.10484 1.98354 1.80976 1.28245 1.97257 1.20881 1.00289 0.90275 0.96749 1.19553 0.91681 0.95676 1.07319 1.20203 0.99714 0.92282 0.83253 1.47857 1.27188 1.45186 1.13322 1.22285 0.92260 0.92330 1.01148 1.20764 0.80321 0.80541 0.87172 1.90592 1.40767 1.35923 1.77109 1.21407 0.90151 1.01124 0.90655 0.87585 1.58772 1.22400 1.22652 1.32179 1.22128 0.98651 0.98300 0.96665 1.18940 0.95664 0.95068 0.90704 1.21535 1.24761 1.14744 0.97205 0.93038 1.25818 0.97784 0.95876 0.99491 1.70050 1.42965 1.27133 1.16344 0.85637 0.79656 0.78732 0.77861 1.19884 1.20674 1.19053 0.90913 0.92121 0.85984 0.81624 0.82710 0.85407 0.86875 0.90092 0.90753 0.88036 0.91616 0.83318 0.84459 0.91818 0.94374 0.98044 0.97772 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.22 7.06 -92.67 -0.65 -5.88 16 3 C 0.15 2.97 6.66 22.50 0.15 3.12 16 4 C -0.20 -3.43 9.04 22.36 0.20 -3.22 16 5 C -0.07 -1.32 9.82 22.28 0.22 -1.10 16 6 C -0.09 -2.11 6.32 22.33 0.14 -1.97 16 7 Cl -0.08 -1.82 28.95 -2.72 -0.08 -1.90 16 8 C -0.06 -1.64 9.45 22.28 0.21 -1.43 16 9 C -0.14 -3.38 5.47 -19.77 -0.11 -3.49 16 10 C 0.17 3.96 5.23 85.63 0.45 4.41 16 11 N -0.60 -16.40 2.86 -851.13 -2.43 -18.83 16 12 C 0.06 1.38 9.85 127.77 1.26 2.64 16 13 C 0.52 17.99 6.92 87.66 0.61 18.60 16 14 O -0.57 -22.41 15.83 -3.05 -0.05 -22.46 16 15 C 0.08 2.89 2.37 44.17 0.10 3.00 16 16 H 0.11 3.52 7.21 -2.39 -0.02 3.51 16 17 N -0.83 -29.93 8.94 -171.80 -1.54 -31.47 16 18 C -0.12 -4.78 4.45 30.60 0.14 -4.64 16 19 C 0.03 1.65 4.74 29.85 0.14 1.80 16 20 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 21 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 22 C 0.01 0.50 5.46 84.65 0.46 0.96 16 23 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 24 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.17 1.82 6.30 -2.91 -0.02 1.80 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.13 3.67 8.03 -2.91 -0.02 3.64 16 34 H 0.11 2.08 7.78 -2.39 -0.02 2.06 16 35 H 0.08 2.09 7.28 -2.39 -0.02 2.07 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.96 5.18 -2.39 -0.01 1.95 16 38 H 0.07 1.73 4.83 -2.39 -0.01 1.72 16 39 H 0.35 12.76 7.55 -89.69 -0.68 12.09 16 40 H 0.34 12.70 8.58 -89.69 -0.77 11.93 16 41 H 0.06 2.49 6.43 -2.39 -0.02 2.47 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -68.40 380.53 2.47 -65.92 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.41 Total: 33.04 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.32 Total: -9.89 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -3.68 Total: -104.08 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.70 Total: -28.33 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -68.40 2.47 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424058865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds