Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38743 * 120.04122 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95267 * 179.97438 * 4 3 2 6 6 C 1.38382 * 120.04709 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.95949 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08327 * 0.02562 * 6 5 4 9 9 C 1.38169 * 120.04074 * 359.70393 * 8 6 5 10 10 C 1.50697 * 120.01780 * 180.29822 * 9 8 6 11 11 N 1.46499 * 109.47092 * 260.24725 * 10 9 8 12 12 C 1.46501 * 120.00372 * 270.00386 * 11 10 9 13 13 C 1.34784 * 119.99733 * 90.00572 * 11 10 9 14 14 O 1.21280 * 119.99644 * 359.97438 * 13 11 10 15 15 C 1.50701 * 119.99871 * 179.97438 * 13 11 10 16 16 H 1.09005 * 109.46585 * 40.00310 * 15 13 11 17 17 N 1.46896 * 109.46573 * 159.99551 * 15 13 11 18 18 C 1.52993 * 109.47283 * 279.99976 * 15 13 11 19 19 C 1.52999 * 109.47091 * 175.00034 * 18 15 13 20 20 C 1.50701 * 109.47144 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99939 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00065 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99941 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 60.00059 * 24 22 20 26 26 H 1.48495 * 109.46765 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46955 * 300.00037 * 24 22 20 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 31 31 H 1.07998 * 120.02281 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97737 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.97842 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47587 * 20.25703 * 10 9 8 35 35 H 1.09011 * 109.46802 * 140.25251 * 10 9 8 36 36 H 1.08995 * 109.46942 * 90.00062 * 12 11 10 37 37 H 1.08999 * 109.46852 * 210.00183 * 12 11 10 38 38 H 1.09004 * 109.46952 * 330.00234 * 12 11 10 39 39 H 1.00895 * 111.00567 * 296.04720 * 17 15 13 40 40 H 1.00897 * 111.00245 * 60.00729 * 17 15 13 41 41 H 1.08997 * 109.46927 * 294.99980 * 18 15 13 42 42 H 1.09005 * 109.47108 * 54.99927 * 18 15 13 43 43 H 1.08997 * 109.47191 * 299.99784 * 19 18 15 44 44 H 1.08999 * 109.46843 * 60.00090 * 19 18 15 45 45 H 0.97006 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9202 3.6050 0.0011 6 6 3.3022 3.6764 0.0005 7 17 4.0903 5.2232 0.0019 8 6 4.0565 2.5167 -0.0011 9 6 3.4311 1.2847 0.0040 10 6 4.2533 0.0218 0.0091 11 7 4.3235 -0.5206 -1.3500 12 6 3.3108 -1.4731 -1.8118 13 6 5.3199 -0.1433 -2.1755 14 8 6.1581 0.6456 -1.7933 15 6 5.3925 -0.7017 -3.5734 16 1 4.3886 -0.7586 -3.9944 17 7 6.2246 0.1749 -4.4081 18 6 6.0083 -2.1016 -3.5320 19 6 5.9680 -2.7181 -4.9317 20 6 6.5751 -4.0968 -4.8911 21 1 6.9517 -4.4938 -3.9600 22 6 6.6489 -4.8518 -6.0425 23 7 6.1899 -4.3685 -7.1762 24 14 7.4009 -6.5610 -5.9920 25 1 6.6292 -7.4137 -5.0526 26 1 7.3618 -7.1592 -7.3505 27 1 8.8101 -6.4684 -5.5327 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2127 2.3199 0.0014 32 1 1.3330 4.5114 0.0019 33 1 5.1350 2.5745 -0.0019 34 1 5.2596 0.2447 0.3638 35 1 3.7894 -0.7111 0.6693 36 1 2.4824 -0.9304 -2.2670 37 1 3.7528 -2.1452 -2.5473 38 1 2.9437 -2.0524 -0.9645 39 1 5.8053 1.0876 -4.5040 40 1 7.1609 0.2442 -4.0385 41 1 7.0425 -2.0337 -3.1946 42 1 5.4416 -2.7277 -2.8427 43 1 4.9338 -2.7860 -5.2691 44 1 6.5347 -2.0920 -5.6209 45 1 6.2421 -4.8995 -7.9863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424058870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -59.567820 kcal Electronic energy + Delta-G solvation = -27549.528037 eV Core-core repulsion = 23593.025700 eV Total energy + Delta-G solvation = -3956.502338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83320 -39.72350 -38.00082 -36.52472 -35.62425 -35.23222 -32.80962 -32.20381 -30.30948 -30.07251 -28.07689 -27.31580 -26.67188 -25.51724 -23.36697 -22.54577 -21.85926 -20.26740 -19.01777 -18.37251 -17.23725 -16.64905 -16.56080 -16.47318 -16.17285 -15.77902 -15.39981 -15.07775 -14.67944 -14.43651 -14.32493 -14.04313 -13.52741 -13.41139 -13.26031 -12.91238 -12.71578 -12.57292 -12.32117 -12.19767 -12.06812 -11.93723 -11.70667 -11.50625 -11.49806 -11.05720 -10.99539 -10.85486 -10.63948 -10.53486 -10.05838 -9.75665 -9.39361 -9.31592 -8.99470 -8.68020 -8.43572 -8.29935 -8.13655 -5.92499 -3.94666 0.82041 0.90464 1.92394 2.80274 2.87797 3.01498 3.36738 3.41402 3.43724 3.46739 4.29471 4.36414 4.50804 4.64839 4.73974 4.77348 4.82119 4.88553 5.02308 5.11424 5.17268 5.22302 5.30743 5.42928 5.48075 5.56019 5.58839 5.65206 5.75661 5.82492 5.87480 5.90387 5.97004 6.27725 6.42401 6.56038 6.69467 6.93026 7.10708 7.38288 7.57016 7.77370 7.84268 7.97699 8.14994 8.32603 8.49843 9.13250 9.68361 11.18344 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.002585 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.223378 B =10827.844196 C =11901.566304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.147 3.853 4 C -0.202 4.202 5 C -0.069 4.069 6 C -0.075 4.075 7 Cl -0.072 7.072 8 C -0.048 4.048 9 C -0.123 4.123 10 C 0.162 3.838 11 N -0.608 5.608 12 C 0.077 3.923 13 C 0.485 3.515 14 O -0.552 6.552 15 C 0.079 3.921 16 H 0.096 0.904 17 N -0.807 5.807 18 C -0.097 4.097 19 C 0.032 3.968 20 C -0.523 4.523 21 H 0.051 0.949 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.333 0.667 40 H 0.347 0.653 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.012 0.988 44 H 0.035 0.965 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 14.750 17.773 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.101 3.899 4 C -0.221 4.221 5 C -0.088 4.088 6 C -0.101 4.101 7 Cl -0.043 7.043 8 C -0.067 4.067 9 C -0.125 4.125 10 C 0.039 3.961 11 N -0.341 5.341 12 C -0.066 4.066 13 C 0.273 3.727 14 O -0.430 6.430 15 C -0.037 4.037 16 H 0.114 0.886 17 N -0.335 5.335 18 C -0.135 4.135 19 C -0.005 4.005 20 C -0.561 4.561 21 H 0.070 0.930 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.844 14.496 17.171 26.395 hybrid contribution 0.024 0.008 0.867 0.867 sum -13.820 14.505 18.038 26.958 Atomic orbital electron populations 1.23120 0.78126 1.04383 1.01368 1.86133 1.21477 1.26217 1.88070 1.18892 0.91627 0.84521 0.94888 1.21144 1.00297 0.91530 1.09116 1.20818 0.92360 0.98065 0.97548 1.20772 0.92791 0.86899 1.09665 1.98366 1.80708 1.28072 1.97190 1.20938 1.00841 0.89349 0.95571 1.19584 0.90804 0.96124 1.06030 1.20146 0.99799 0.91568 0.84560 1.47986 1.27879 1.45026 1.13175 1.21971 0.91121 0.92305 1.01207 1.22772 0.79805 0.80714 0.89444 1.90613 1.39831 1.35560 1.76972 1.21838 0.99721 0.96348 0.85764 0.88584 1.59006 1.06214 1.16164 1.52086 1.21702 0.99219 0.89975 1.02592 1.19003 0.97288 0.94605 0.89584 1.21245 1.39660 1.00755 0.94438 0.93041 1.24986 0.95664 0.98025 0.95610 1.69965 1.46611 1.37369 0.99245 0.86719 0.79865 0.84805 0.76937 1.20373 1.21358 1.20327 0.87830 0.92635 0.92457 0.84552 0.84795 0.83852 0.89107 0.89275 0.92980 0.89496 0.90924 0.85539 0.83884 0.92835 0.92605 0.96935 0.94694 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.69 8.52 -19.51 -0.17 -2.85 16 3 C 0.15 1.46 6.66 -39.23 -0.26 1.20 16 4 C -0.20 -1.71 9.04 -39.44 -0.36 -2.07 16 5 C -0.07 -0.62 9.82 -39.57 -0.39 -1.01 16 6 C -0.07 -0.80 6.32 -39.49 -0.25 -1.05 16 7 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 8 C -0.05 -0.56 9.45 -39.57 -0.37 -0.93 16 9 C -0.12 -1.40 5.47 -104.48 -0.57 -1.97 16 10 C 0.16 1.92 5.24 -5.20 -0.03 1.89 16 11 N -0.61 -8.15 2.86 -182.95 -0.52 -8.67 16 12 C 0.08 0.90 8.82 59.85 0.53 1.43 16 13 C 0.49 7.85 6.91 -10.98 -0.08 7.77 16 14 O -0.55 -10.02 15.83 5.56 0.09 -9.94 16 15 C 0.08 1.36 2.31 -68.87 -0.16 1.20 16 16 H 0.10 1.60 7.21 -51.93 -0.37 1.23 16 17 N -0.81 -14.03 8.44 -5.66 -0.05 -14.08 16 18 C -0.10 -1.96 4.45 -26.74 -0.12 -2.07 16 19 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 20 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 21 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 24 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.14 0.80 6.30 -52.49 -0.33 0.47 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.79 8.04 -52.49 -0.42 1.36 16 34 H 0.09 1.15 7.29 -51.93 -0.38 0.77 16 35 H 0.09 0.91 7.60 -51.92 -0.39 0.51 16 36 H 0.05 0.57 8.02 -51.93 -0.42 0.16 16 37 H 0.09 1.14 4.83 -51.93 -0.25 0.89 16 38 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 39 H 0.33 5.14 9.06 -39.29 -0.36 4.79 16 40 H 0.35 6.09 8.58 -39.29 -0.34 5.76 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.06 6.43 -51.93 -0.33 0.73 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -32.71 385.35 -8.67 -41.38 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.43 Total: 7.32 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.61 Total: -7.25 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.17 Total: -48.89 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.71 -8.67 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424058870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.189 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds