Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38743 * 120.04122 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.95267 * 179.97438 * 4 3 2 6 6 C 1.38382 * 120.04709 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.95949 * 180.02562 * 6 5 4 8 8 C 1.38349 * 120.08327 * 0.02562 * 6 5 4 9 9 C 1.38169 * 120.04074 * 359.70393 * 8 6 5 10 10 C 1.50697 * 120.01780 * 180.29822 * 9 8 6 11 11 N 1.46499 * 109.47092 * 260.24725 * 10 9 8 12 12 C 1.46501 * 120.00372 * 270.00386 * 11 10 9 13 13 C 1.34784 * 119.99733 * 90.00572 * 11 10 9 14 14 O 1.21280 * 119.99644 * 359.97438 * 13 11 10 15 15 C 1.50701 * 119.99871 * 179.97438 * 13 11 10 16 16 H 1.09005 * 109.46585 * 40.00310 * 15 13 11 17 17 N 1.46896 * 109.46573 * 159.99551 * 15 13 11 18 18 C 1.52993 * 109.47283 * 279.99976 * 15 13 11 19 19 C 1.52999 * 109.47091 * 175.00034 * 18 15 13 20 20 C 1.50701 * 109.47144 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99939 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00065 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99941 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 60.00059 * 24 22 20 26 26 H 1.48495 * 109.46765 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46955 * 300.00037 * 24 22 20 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 31 31 H 1.07998 * 120.02281 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97737 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.97842 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47587 * 20.25703 * 10 9 8 35 35 H 1.09011 * 109.46802 * 140.25251 * 10 9 8 36 36 H 1.08995 * 109.46942 * 90.00062 * 12 11 10 37 37 H 1.08999 * 109.46852 * 210.00183 * 12 11 10 38 38 H 1.09004 * 109.46952 * 330.00234 * 12 11 10 39 39 H 1.00895 * 111.00567 * 296.04720 * 17 15 13 40 40 H 1.00897 * 111.00245 * 60.00729 * 17 15 13 41 41 H 1.08997 * 109.46927 * 294.99980 * 18 15 13 42 42 H 1.09005 * 109.47108 * 54.99927 * 18 15 13 43 43 H 1.08997 * 109.47191 * 299.99784 * 19 18 15 44 44 H 1.08999 * 109.46843 * 60.00090 * 19 18 15 45 45 H 0.97006 * 119.99832 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9202 3.6050 0.0011 6 6 3.3022 3.6764 0.0005 7 17 4.0903 5.2232 0.0019 8 6 4.0565 2.5167 -0.0011 9 6 3.4311 1.2847 0.0040 10 6 4.2533 0.0218 0.0091 11 7 4.3235 -0.5206 -1.3500 12 6 3.3108 -1.4731 -1.8118 13 6 5.3199 -0.1433 -2.1755 14 8 6.1581 0.6456 -1.7933 15 6 5.3925 -0.7017 -3.5734 16 1 4.3886 -0.7586 -3.9944 17 7 6.2246 0.1749 -4.4081 18 6 6.0083 -2.1016 -3.5320 19 6 5.9680 -2.7181 -4.9317 20 6 6.5751 -4.0968 -4.8911 21 1 6.9517 -4.4938 -3.9600 22 6 6.6489 -4.8518 -6.0425 23 7 6.1899 -4.3685 -7.1762 24 14 7.4009 -6.5610 -5.9920 25 1 6.6292 -7.4137 -5.0526 26 1 7.3618 -7.1592 -7.3505 27 1 8.8101 -6.4684 -5.5327 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2127 2.3199 0.0014 32 1 1.3330 4.5114 0.0019 33 1 5.1350 2.5745 -0.0019 34 1 5.2596 0.2447 0.3638 35 1 3.7894 -0.7111 0.6693 36 1 2.4824 -0.9304 -2.2670 37 1 3.7528 -2.1452 -2.5473 38 1 2.9437 -2.0524 -0.9645 39 1 5.8053 1.0876 -4.5040 40 1 7.1609 0.2442 -4.0385 41 1 7.0425 -2.0337 -3.1946 42 1 5.4416 -2.7277 -2.8427 43 1 4.9338 -2.7860 -5.2691 44 1 6.5347 -2.0920 -5.6209 45 1 6.2421 -4.8995 -7.9863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424058870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -80.564510 kcal Electronic energy + Delta-G solvation = -27550.438522 eV Core-core repulsion = 23593.025700 eV Total energy + Delta-G solvation = -3957.412822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67868 -40.83278 -38.69248 -37.37147 -36.84546 -36.64587 -34.81881 -33.06384 -31.92337 -31.02055 -28.94142 -28.18887 -27.81325 -26.98093 -24.92191 -23.26155 -22.88723 -21.93835 -20.23911 -19.09287 -18.52791 -18.18702 -17.46687 -17.38899 -17.35697 -16.82087 -16.59906 -16.39361 -16.05195 -15.50829 -15.37733 -14.98245 -14.73426 -14.38613 -14.26543 -14.24844 -13.90506 -13.73721 -13.54240 -13.41193 -13.28061 -12.95434 -12.78805 -12.73247 -12.55723 -12.49357 -12.22198 -12.20690 -11.80527 -11.70743 -11.62884 -11.60854 -11.21383 -10.97637 -10.47021 -10.16760 -9.74330 -9.60282 -9.12792 -8.11859 -6.22149 0.06123 0.15083 1.14529 1.42990 1.45953 1.51484 1.54041 2.02025 2.29843 2.46129 2.60445 3.21098 3.48468 3.57122 3.65980 3.74973 3.99297 4.07371 4.11459 4.24621 4.31242 4.35614 4.39907 4.45258 4.46115 4.63538 4.71608 4.76206 4.77496 4.83251 4.91245 4.99800 5.04593 5.11507 5.18985 5.27189 5.49091 5.52902 5.58996 5.85739 6.00257 6.08372 6.30816 6.32025 6.34554 6.49664 6.96132 7.08164 7.45853 8.99186 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.002585 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.223378 B =10827.844196 C =11901.566304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.317 6.317 3 C 0.148 3.852 4 C -0.196 4.196 5 C -0.065 4.065 6 C -0.088 4.088 7 Cl -0.076 7.076 8 C -0.062 4.062 9 C -0.140 4.140 10 C 0.164 3.836 11 N -0.600 5.600 12 C 0.076 3.924 13 C 0.487 3.513 14 O -0.576 6.576 15 C 0.087 3.913 16 H 0.103 0.897 17 N -0.818 5.818 18 C -0.081 4.081 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.056 0.944 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.344 0.656 40 H 0.345 0.655 41 H 0.041 0.959 42 H 0.070 0.930 43 H -0.006 1.006 44 H 0.003 0.997 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 14.101 19.130 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.214 4.214 5 C -0.084 4.084 6 C -0.115 4.115 7 Cl -0.048 7.048 8 C -0.081 4.081 9 C -0.142 4.142 10 C 0.041 3.959 11 N -0.332 5.332 12 C -0.066 4.066 13 C 0.274 3.726 14 O -0.456 6.456 15 C -0.029 4.029 16 H 0.121 0.879 17 N -0.347 5.347 18 C -0.119 4.119 19 C 0.005 3.995 20 C -0.581 4.581 21 H 0.074 0.926 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.784 3.216 25 H -0.189 1.189 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.013 0.987 44 H 0.022 0.978 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.913 13.842 18.559 28.094 hybrid contribution 0.552 0.222 0.461 0.753 sum -15.362 14.064 19.020 28.206 Atomic orbital electron populations 1.23414 0.76153 1.05867 1.02442 1.86115 1.23480 1.25612 1.87734 1.18937 0.91176 0.85570 0.94192 1.21480 1.01754 0.90621 1.07592 1.21128 0.91676 0.99363 0.96236 1.20894 0.93609 0.86412 1.10589 1.98359 1.80988 1.28170 1.97260 1.20849 1.00171 0.90281 0.96837 1.19503 0.91707 0.95415 1.07609 1.20213 0.99517 0.92551 0.83572 1.48001 1.27191 1.44526 1.13434 1.22063 0.90676 0.91985 1.01845 1.22375 0.80391 0.80726 0.89139 1.90608 1.41005 1.36747 1.77223 1.21609 0.99545 0.94705 0.86997 0.87936 1.58990 1.06317 1.16968 1.52414 1.21424 0.99108 0.91870 0.99542 1.18797 0.95236 0.93627 0.91851 1.21696 1.39700 1.01981 0.94761 0.92584 1.25892 0.96068 1.02392 0.95183 1.70102 1.47833 1.39112 0.99959 0.85604 0.79123 0.79666 0.77253 1.18927 1.20989 1.19730 0.86309 0.91149 0.91706 0.81503 0.82561 0.85693 0.90555 0.87327 0.91916 0.91047 0.88620 0.84329 0.84151 0.94028 0.91138 0.98729 0.97823 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.22 16 2 O -0.32 -4.61 8.52 -92.74 -0.79 -5.40 16 3 C 0.15 2.61 6.66 22.50 0.15 2.76 16 4 C -0.20 -2.74 9.04 22.36 0.20 -2.54 16 5 C -0.07 -1.03 9.82 22.28 0.22 -0.81 16 6 C -0.09 -1.83 6.32 22.33 0.14 -1.69 16 7 Cl -0.08 -1.57 28.95 -2.72 -0.08 -1.65 16 8 C -0.06 -1.46 9.45 22.28 0.21 -1.25 16 9 C -0.14 -3.07 5.47 -19.77 -0.11 -3.18 16 10 C 0.16 3.75 5.24 85.63 0.45 4.19 16 11 N -0.60 -15.55 2.86 -851.12 -2.43 -17.98 16 12 C 0.08 1.65 8.82 127.77 1.13 2.78 16 13 C 0.49 15.74 6.91 87.66 0.61 16.34 16 14 O -0.58 -21.30 15.83 -3.03 -0.05 -21.35 16 15 C 0.09 3.02 2.31 44.17 0.10 3.13 16 16 H 0.10 3.41 7.21 -2.38 -0.02 3.40 16 17 N -0.82 -29.11 8.44 -171.81 -1.45 -30.56 16 18 C -0.08 -3.32 4.45 30.59 0.14 -3.19 16 19 C 0.04 2.20 4.86 29.85 0.15 2.34 16 20 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 21 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 22 C 0.00 0.14 5.46 84.66 0.46 0.61 16 23 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 24 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.29 7.66 -2.38 -0.02 0.27 16 30 H 0.06 0.37 7.66 -2.39 -0.02 0.35 16 31 H 0.17 1.25 6.30 -2.91 -0.02 1.23 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.13 3.32 8.04 -2.91 -0.02 3.29 16 34 H 0.08 1.96 7.29 -2.39 -0.02 1.94 16 35 H 0.11 2.02 7.60 -2.38 -0.02 2.00 16 36 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 37 H 0.07 1.79 4.83 -2.39 -0.01 1.78 16 38 H 0.10 1.64 7.89 -2.39 -0.02 1.62 16 39 H 0.34 10.79 9.06 -89.70 -0.81 9.98 16 40 H 0.34 12.50 8.58 -89.70 -0.77 11.73 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.65 6.43 -2.38 -0.02 2.64 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.00 0.19 7.75 -2.39 -0.02 0.18 16 45 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -71.17 385.35 2.15 -69.02 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.55 Total: 27.90 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.19 Total: -9.87 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.60 Total: -105.00 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.84 Total: -26.75 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -71.17 2.15 -69.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424058870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.546 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds