Wall clock time and date at job start Sat Apr 11 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99791 * 2 1 4 4 H 1.09001 * 109.47006 * 30.00284 * 3 2 1 5 5 C 1.53000 * 109.47280 * 150.00020 * 3 2 1 6 6 N 1.46498 * 109.47009 * 300.00234 * 5 3 2 7 7 C 1.34779 * 119.99978 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99890 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99775 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47793 * 40.00300 * 9 7 6 11 11 N 1.46901 * 109.46912 * 159.99971 * 9 7 6 12 12 C 1.53006 * 109.47301 * 279.99751 * 9 7 6 13 13 C 1.52999 * 109.46997 * 175.00426 * 12 9 7 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 9 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.50698 * 109.47014 * 270.00123 * 3 2 1 23 23 C 1.38265 * 119.99220 * 324.72196 * 22 3 2 24 24 C 1.38222 * 120.02257 * 179.76888 * 23 22 3 25 25 C 1.38233 * 120.01694 * 0.51071 * 24 23 22 26 26 C 1.38337 * 119.98267 * 359.74284 * 25 24 23 27 27 Cl 1.73603 * 120.00894 * 180.02562 * 26 25 24 28 28 C 1.38199 * 119.99396 * 144.99981 * 22 3 2 29 29 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47218 * 299.99845 * 1 2 3 31 31 H 1.09001 * 109.47467 * 60.00478 * 1 2 3 32 32 H 1.08996 * 109.47284 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47048 * 59.99660 * 5 3 2 34 34 H 0.97004 * 120.00084 * 359.97438 * 6 5 3 35 35 H 1.00900 * 111.00110 * 60.00140 * 11 9 7 36 36 H 1.00905 * 111.00268 * 183.95255 * 11 9 7 37 37 H 1.09000 * 109.46866 * 55.00213 * 12 9 7 38 38 H 1.09001 * 109.46611 * 295.00330 * 12 9 7 39 39 H 1.09000 * 109.47486 * 60.00167 * 13 12 9 40 40 H 1.09001 * 109.47362 * 299.99445 * 13 12 9 41 41 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 42 42 H 1.08004 * 119.98774 * 0.02562 * 23 22 3 43 43 H 1.08007 * 119.98866 * 180.25545 * 24 23 22 44 44 H 1.08002 * 120.00937 * 179.72410 * 25 24 23 45 45 H 1.07994 * 120.00307 * 359.97438 * 28 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2634 0.7212 6 7 3.1603 0.8173 2.1024 7 6 4.2161 0.7041 2.9325 8 8 5.3306 0.9712 2.5358 9 6 4.0117 0.2457 4.3534 10 1 3.2712 -0.5539 4.3744 11 7 5.2836 -0.2505 4.8955 12 6 3.5189 1.4195 5.2021 13 6 3.1927 0.9269 6.6134 14 6 2.7067 2.0830 7.4491 15 1 2.6418 3.0711 7.0182 16 6 2.3500 1.8801 8.7654 17 7 2.4343 0.6778 9.2918 18 14 1.7470 3.3130 9.8011 19 1 0.2714 3.4264 9.6781 20 1 2.1088 3.0828 11.2229 21 1 2.3813 4.5688 9.3259 22 6 2.2144 1.7644 -1.4208 23 6 2.5651 0.8516 -2.3983 24 6 2.7479 1.2710 -3.7026 25 6 2.5906 2.6051 -4.0285 26 6 2.2449 3.5197 -3.0498 27 17 2.0466 5.1953 -3.4585 28 6 2.0569 3.0985 -1.7454 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8020 2.2593 0.7216 33 1 4.0241 0.5695 0.2074 34 1 2.2688 0.6040 2.4198 35 1 5.9871 0.4727 4.8870 36 1 5.1597 -0.6234 5.8250 37 1 2.6230 1.8443 4.7494 38 1 4.2962 2.1819 5.2540 39 1 4.0886 0.5021 7.0662 40 1 2.4153 0.1646 6.5616 41 1 2.1837 0.5352 10.2179 42 1 2.6921 -0.1902 -2.1434 43 1 3.0178 0.5568 -4.4665 44 1 2.7379 2.9334 -5.0468 45 1 1.7870 3.8120 -0.9809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:03 Heat of formation + Delta-G solvation = -80.199813 kcal Electronic energy + Delta-G solvation = -26478.017945 eV Core-core repulsion = 22520.620937 eV Total energy + Delta-G solvation = -3957.397008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36740 -39.45424 -38.14053 -36.76465 -35.55445 -34.64267 -32.85451 -32.46695 -31.13415 -29.88866 -29.07308 -26.92742 -26.14773 -24.40361 -23.12900 -23.09798 -21.43782 -20.71039 -19.76757 -17.78690 -17.39462 -17.08401 -16.45146 -16.21820 -15.90993 -15.45774 -15.22025 -14.98247 -14.81895 -14.46601 -14.37152 -14.14200 -13.95439 -13.79749 -13.41523 -13.23504 -12.97927 -12.60828 -12.25627 -12.14756 -12.00767 -11.97696 -11.73003 -11.67916 -11.33323 -11.29168 -11.08081 -10.93450 -10.69581 -10.18077 -9.99353 -9.91039 -9.42239 -9.28648 -9.20614 -9.09585 -8.97969 -8.44948 -8.16734 -6.09455 -4.12567 0.70584 0.78762 1.72127 2.95994 3.07828 3.25860 3.28695 3.32215 3.33029 3.36310 4.20083 4.35943 4.38460 4.61605 4.63802 4.68515 4.85836 4.95931 5.04342 5.08766 5.13492 5.20348 5.23309 5.26854 5.37535 5.39663 5.45719 5.60977 5.69332 5.74511 5.77762 5.90368 6.00151 6.28556 6.33263 6.48539 6.52722 6.75077 6.87252 7.44666 7.51692 7.61175 7.71871 7.87729 7.92822 8.30301 8.48570 8.93465 9.52312 11.01426 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.002155 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.700451 B =12989.425071 C =13779.084546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.120 3.880 4 H 0.082 0.918 5 C 0.132 3.868 6 N -0.730 5.730 7 C 0.527 3.473 8 O -0.539 6.539 9 C 0.075 3.925 10 H 0.097 0.903 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.100 4.100 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.107 4.107 26 C -0.037 4.037 27 Cl -0.070 7.070 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.403 0.597 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 1.005 -27.210 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C 0.061 3.939 4 H 0.099 0.901 5 C 0.007 3.993 6 N -0.383 5.383 7 C 0.313 3.687 8 O -0.415 6.415 9 C -0.040 4.040 10 H 0.115 0.885 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.101 4.101 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.063 4.063 27 Cl -0.041 7.041 28 C -0.118 4.118 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.473 0.559 -27.972 28.192 hybrid contribution -1.267 1.841 1.399 2.637 sum -4.740 2.399 -26.573 27.099 Atomic orbital electron populations 1.22887 0.80477 1.03256 1.00344 1.87992 1.20130 1.26053 1.94713 1.21204 0.95551 0.85962 0.91155 0.90055 1.21323 0.94555 1.01280 0.82103 1.45836 1.10960 1.70241 1.11292 1.20885 0.83958 0.76218 0.87593 1.90637 1.24044 1.49406 1.77389 1.21463 0.93892 0.98572 0.90041 0.88546 1.58736 1.07301 1.40150 1.30078 1.22381 1.00344 0.96127 0.98827 1.19106 0.96833 0.96740 0.88636 1.21180 1.44078 0.94903 0.96017 0.92740 1.25015 0.95655 0.95705 0.97965 1.69947 1.48232 1.20826 1.14164 0.86589 0.79065 0.82735 0.79591 1.20629 1.21146 1.19897 1.20173 1.00761 0.93005 0.96194 1.21169 0.96471 1.00515 0.92199 1.21172 0.99682 0.95119 0.96813 1.21124 0.99556 0.92803 0.99116 1.20870 1.04878 0.85726 0.94838 1.98385 1.95908 1.15945 1.93895 1.20938 1.00131 0.95728 0.94973 0.89164 0.93392 0.93970 0.90116 0.90575 0.76255 0.84156 0.83065 0.92611 0.92686 0.96376 0.96317 0.92876 0.84543 0.84836 0.84913 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.81 101.05 1.09 1.28 16 2 O -0.37 -3.37 9.25 -35.23 -0.33 -3.70 16 3 C 0.12 1.05 2.40 -27.88 -0.07 0.98 16 4 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 5 C 0.13 1.48 5.35 -4.04 -0.02 1.46 16 6 N -0.73 -9.37 5.45 -60.30 -0.33 -9.70 16 7 C 0.53 8.72 7.08 -10.99 -0.08 8.65 16 8 O -0.54 -10.59 16.25 5.56 0.09 -10.50 16 9 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 10 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 11 N -0.83 -14.44 8.94 -5.65 -0.05 -14.49 16 12 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 13 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 14 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.10 -0.85 4.96 -104.63 -0.52 -1.37 16 23 C -0.09 -0.68 9.35 -39.58 -0.37 -1.05 16 24 C -0.11 -0.75 10.04 -39.59 -0.40 -1.15 16 25 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 26 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 27 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 28 C -0.10 -0.83 9.47 -39.55 -0.37 -1.20 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 4.48 8.35 -40.82 -0.34 4.14 16 35 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 36 H 0.35 6.15 7.55 -39.29 -0.30 5.85 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.14 1.05 7.64 -52.48 -0.40 0.65 16 43 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -31.98 396.01 -9.44 -41.42 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.74 Total: 10.57 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.26 Total: -8.46 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.36 Total: -49.34 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.24 Total: -14.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.98 -9.44 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.776 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds