Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99513 * 2 1 4 4 C 1.53006 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47050 * 174.99922 * 4 3 2 6 6 N 1.46500 * 109.46998 * 294.99868 * 4 3 2 7 7 C 1.34779 * 119.99741 * 275.00368 * 6 4 3 8 8 O 1.21279 * 120.00369 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99762 * 179.97438 * 7 6 4 10 10 H 1.09004 * 109.46674 * 39.99713 * 9 7 6 11 11 N 1.46897 * 109.47086 * 159.99749 * 9 7 6 12 12 C 1.52990 * 109.47177 * 280.00081 * 9 7 6 13 13 C 1.53008 * 109.47184 * 174.99914 * 12 9 7 14 14 C 1.50699 * 109.47272 * 179.97438 * 13 12 9 15 15 H 1.08007 * 119.99734 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47439 * 89.99982 * 18 16 14 20 20 H 1.48499 * 109.47232 * 210.00053 * 18 16 14 21 21 H 1.48508 * 109.47248 * 330.00031 * 18 16 14 22 22 C 1.50697 * 109.47239 * 54.99586 * 4 3 2 23 23 C 1.38240 * 119.98935 * 279.72986 * 22 4 3 24 24 C 1.38212 * 120.01125 * 179.72470 * 23 22 4 25 25 C 1.38355 * 119.98756 * 0.55048 * 24 23 22 26 26 Cl 1.73602 * 120.01486 * 179.70412 * 25 24 23 27 27 C 1.38353 * 119.97334 * 359.72015 * 25 24 23 28 28 C 1.38213 * 119.98738 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.47173 * 300.00021 * 1 2 3 30 30 H 1.09007 * 109.47491 * 59.99931 * 1 2 3 31 31 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47442 * 59.99944 * 3 2 1 33 33 H 1.09007 * 109.47471 * 299.99799 * 3 2 1 34 34 H 0.96997 * 120.00110 * 94.99637 * 6 4 3 35 35 H 1.00910 * 110.99969 * 296.04843 * 11 9 7 36 36 H 1.00900 * 111.00284 * 59.99521 * 11 9 7 37 37 H 1.09007 * 109.47166 * 294.99850 * 12 9 7 38 38 H 1.08997 * 109.47617 * 54.99936 * 12 9 7 39 39 H 1.08992 * 109.47028 * 300.00027 * 13 12 9 40 40 H 1.09006 * 109.46614 * 59.99692 * 13 12 9 41 41 H 0.97001 * 119.99772 * 179.97438 * 17 16 14 42 42 H 1.08002 * 119.99293 * 359.97438 * 23 22 4 43 43 H 1.08004 * 120.00661 * 180.27014 * 24 23 22 44 44 H 1.07998 * 120.00694 * 179.97438 * 27 25 24 45 45 H 1.08000 * 119.99352 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9766 0.5641 1.2509 7 6 4.1661 1.3224 2.3489 8 8 3.9719 2.5185 2.3008 9 6 4.6195 0.6838 3.6365 10 1 5.3676 -0.0789 3.4201 11 7 5.2039 1.7085 4.5120 12 6 3.4211 0.0389 4.3355 13 6 3.9003 -0.7154 5.5775 14 6 2.7199 -1.3502 6.2664 15 1 1.7270 -1.2276 5.8592 16 6 2.9072 -2.0866 7.4168 17 7 1.8770 -2.6410 8.0177 18 14 4.6241 -2.2968 8.1220 19 1 4.9049 -1.1956 9.0778 20 1 4.7129 -3.6000 8.8284 21 1 5.6194 -2.2620 7.0205 22 6 3.9714 0.3328 -1.1647 23 6 3.9020 -1.0450 -1.0769 24 6 4.2964 -1.8266 -2.1464 25 6 4.7714 -1.2301 -3.3008 26 17 5.2742 -2.2114 -4.6417 27 6 4.8459 0.1488 -3.3861 28 6 4.4463 0.9295 -2.3179 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 4.1323 -0.3925 1.2893 35 1 6.0356 2.1045 4.1002 36 1 4.5296 2.4275 4.7273 37 1 2.7130 0.8131 4.6312 38 1 2.9339 -0.6575 3.6530 39 1 4.6083 -1.4895 5.2818 40 1 4.3875 -0.0189 6.2600 41 1 2.0088 -3.1594 8.8269 42 1 3.5358 -1.5107 -0.1738 43 1 4.2381 -2.9030 -2.0792 44 1 5.2169 0.6149 -4.2868 45 1 4.5039 2.0059 -2.3845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = -73.498072 kcal Electronic energy + Delta-G solvation = -27229.205981 eV Core-core repulsion = 23272.099582 eV Total energy + Delta-G solvation = -3957.106399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56915 -39.39047 -37.95705 -36.82308 -35.53171 -34.98940 -32.76397 -31.76104 -31.30160 -30.48680 -29.04641 -26.93001 -26.22525 -24.20612 -23.42424 -23.04839 -21.11452 -20.38204 -19.89815 -17.97154 -17.18862 -16.87878 -16.55179 -16.37441 -15.92419 -15.66543 -15.63749 -15.34197 -14.76887 -14.48919 -14.16505 -14.00543 -13.84879 -13.79189 -13.53809 -13.09773 -12.79123 -12.63041 -12.50373 -12.35519 -11.88968 -11.82172 -11.72346 -11.60276 -11.27646 -11.13643 -11.00095 -10.87854 -10.40900 -10.00395 -9.85078 -9.71430 -9.59814 -9.37648 -9.25455 -9.11164 -8.94156 -8.51247 -8.39848 -5.99078 -3.96525 0.73642 0.95620 1.79515 2.63714 3.02146 3.34144 3.37923 3.44449 3.49843 3.61650 4.20054 4.42055 4.51717 4.53967 4.72470 4.81919 4.92748 4.97131 5.01094 5.08600 5.22857 5.26065 5.29137 5.34364 5.35577 5.39757 5.44459 5.58149 5.61229 5.67591 5.82704 5.89809 6.08900 6.29727 6.36083 6.41978 6.47847 6.88107 6.94562 7.22802 7.38790 7.46646 7.57657 7.65140 7.86769 8.18298 8.58484 9.05712 9.64079 11.14446 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002595 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.459564 B =10785.550887 C =11191.777343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.053 3.947 4 C 0.189 3.811 5 H 0.109 0.891 6 N -0.718 5.718 7 C 0.488 3.512 8 O -0.554 6.554 9 C 0.075 3.925 10 H 0.098 0.902 11 N -0.810 5.810 12 C -0.086 4.086 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.907 5.907 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.083 4.083 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.033 4.033 26 Cl -0.074 7.074 27 C -0.112 4.112 28 C -0.098 4.098 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.405 0.595 35 H 0.335 0.665 36 H 0.350 0.650 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.013 0.987 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 6.108 -25.847 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.025 4.025 4 C 0.084 3.916 5 H 0.127 0.873 6 N -0.371 5.371 7 C 0.274 3.726 8 O -0.432 6.432 9 C -0.040 4.040 10 H 0.116 0.884 11 N -0.339 5.339 12 C -0.125 4.125 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.084 4.084 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.060 4.060 26 Cl -0.045 7.045 27 C -0.131 4.131 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.822 6.018 -25.283 26.433 hybrid contribution 0.370 0.157 -0.572 0.699 sum 5.192 6.175 -25.856 27.085 Atomic orbital electron populations 1.22736 0.80824 1.02954 0.99847 1.87866 1.19782 1.26926 1.95407 1.22929 0.92801 0.85685 1.01076 1.19862 0.92516 0.97051 0.82172 0.87325 1.46219 1.69199 1.12097 1.09595 1.22681 0.75924 0.87647 0.86394 1.90647 1.52126 1.15365 1.85032 1.21867 0.99775 0.95311 0.87091 0.88388 1.59031 1.10320 1.19032 1.45470 1.21460 0.93567 0.98844 0.98582 1.19483 0.96889 0.94948 0.92837 1.21173 0.94314 1.31233 1.09086 0.91332 1.25016 0.96736 0.95183 0.96606 1.69927 1.30122 1.34980 1.19590 0.86732 0.85490 0.77222 0.79530 1.20319 1.21740 1.18876 1.19879 0.99000 0.94283 0.95196 1.20975 0.96980 0.92797 0.98688 1.21090 0.98983 1.00888 0.91751 1.20982 1.02977 0.91818 0.90229 1.98376 1.89762 1.70650 1.45755 1.20978 1.00961 0.91501 0.99633 1.20948 0.98263 1.00129 0.92322 0.93842 0.94425 0.89435 0.91962 0.92572 0.75836 0.85312 0.83618 0.92333 0.92039 0.96900 0.95285 0.92858 0.84424 0.84685 0.84907 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.30 9.11 -35.23 -0.32 -4.62 16 3 C 0.05 0.56 5.73 37.16 0.21 0.77 16 4 C 0.19 1.93 2.61 -69.08 -0.18 1.75 16 5 H 0.11 1.12 7.44 -51.93 -0.39 0.74 16 6 N -0.72 -8.26 4.97 -54.93 -0.27 -8.53 16 7 C 0.49 6.90 7.03 -10.98 -0.08 6.82 16 8 O -0.55 -9.09 15.91 5.56 0.09 -9.01 16 9 C 0.08 1.14 3.15 -68.87 -0.22 0.93 16 10 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 11 N -0.81 -12.27 8.44 -5.66 -0.05 -12.32 16 12 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 13 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 14 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 15 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 18 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.08 -0.75 4.83 -104.62 -0.51 -1.26 16 23 C -0.08 -0.70 8.06 -39.59 -0.32 -1.02 16 24 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 25 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 26 Cl -0.07 -0.63 28.96 -51.86 -1.50 -2.13 16 27 C -0.11 -0.89 9.83 -39.55 -0.39 -1.28 16 28 C -0.10 -0.78 9.67 -39.59 -0.38 -1.16 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.41 4.23 6.85 -40.82 -0.28 3.95 16 35 H 0.34 4.34 9.06 -39.29 -0.36 3.98 16 36 H 0.35 5.42 8.58 -39.29 -0.34 5.08 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 40 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.14 1.26 6.67 -52.49 -0.35 0.91 16 43 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.79 8.04 -52.49 -0.42 0.37 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -32.94 390.05 -8.81 -41.76 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.69 Total: 9.10 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.05 Total: -10.11 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.45 Total: -48.16 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.23 Total: -13.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.94 -8.81 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.739 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds