Wall clock time and date at job start Sat Apr 11 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00191 * 2 1 4 4 C 1.53001 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47215 * 174.99761 * 4 3 2 6 6 N 1.46496 * 109.46861 * 294.99654 * 4 3 2 7 7 C 1.34772 * 120.00222 * 275.00027 * 6 4 3 8 8 O 1.21283 * 119.99912 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99971 * 180.02562 * 7 6 4 10 10 H 1.09001 * 109.46817 * 319.98961 * 9 7 6 11 11 N 1.46910 * 109.46728 * 199.99907 * 9 7 6 12 12 C 1.52992 * 109.47798 * 79.99728 * 9 7 6 13 13 C 1.52997 * 109.47482 * 185.00026 * 12 9 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.50699 * 109.47057 * 55.00047 * 4 3 2 23 23 C 1.38248 * 119.98449 * 279.72632 * 22 4 3 24 24 C 1.38216 * 120.00938 * 179.72872 * 23 22 4 25 25 C 1.38344 * 119.98749 * 0.54615 * 24 23 22 26 26 Cl 1.73604 * 120.01178 * 179.70455 * 25 24 23 27 27 C 1.38352 * 119.97753 * 359.72843 * 25 24 23 28 28 C 1.38217 * 119.98143 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.46982 * 300.00127 * 1 2 3 30 30 H 1.08994 * 109.46917 * 59.99875 * 1 2 3 31 31 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47545 * 59.99618 * 3 2 1 33 33 H 1.09007 * 109.46820 * 300.00362 * 3 2 1 34 34 H 0.97003 * 119.99378 * 95.00171 * 6 4 3 35 35 H 1.00892 * 110.99957 * 299.99600 * 11 9 7 36 36 H 1.00899 * 110.99816 * 63.94833 * 11 9 7 37 37 H 1.09002 * 109.47103 * 64.99779 * 12 9 7 38 38 H 1.08998 * 109.46862 * 305.00591 * 12 9 7 39 39 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 40 40 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 41 41 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99227 * 359.97438 * 23 22 4 43 43 H 1.07997 * 120.00082 * 180.27241 * 24 23 22 44 44 H 1.07995 * 120.01119 * 179.97438 * 27 25 24 45 45 H 1.08005 * 119.98863 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9767 0.5640 1.2509 7 6 4.1663 1.3222 2.3489 8 8 3.9721 2.5185 2.3007 9 6 4.6207 0.6839 3.6361 10 1 4.1094 -0.2696 3.7690 11 7 4.3015 1.5717 4.7623 12 6 6.1316 0.4495 3.5838 13 6 6.5736 -0.3103 4.8360 14 6 8.0619 -0.5416 4.7841 15 1 8.6352 -0.1823 3.9424 16 6 8.6917 -1.2112 5.8118 17 7 7.9936 -1.6483 6.8370 18 14 10.5365 -1.4973 5.7478 19 1 11.2385 -0.1900 5.6881 20 1 10.9655 -2.2349 6.9632 21 1 10.8722 -2.2950 4.5410 22 6 3.9714 0.3328 -1.1648 23 6 3.9020 -1.0451 -1.0770 24 6 4.2965 -1.8268 -2.1465 25 6 4.7714 -1.2303 -3.3008 26 17 5.2741 -2.2117 -4.6417 27 6 4.8459 0.1486 -3.3862 28 6 4.4454 0.9293 -2.3183 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 4.1323 -0.3926 1.2892 35 1 4.7638 2.4629 4.6623 36 1 3.3041 1.6904 4.8576 37 1 6.6468 1.4091 3.5402 38 1 6.3780 -0.1356 2.6978 39 1 6.0584 -1.2699 4.8796 40 1 6.3272 0.2749 5.7220 41 1 8.4367 -2.1197 7.5598 42 1 3.5358 -1.5108 -0.1739 43 1 4.2380 -2.9031 -2.0793 44 1 5.2169 0.6148 -4.2869 45 1 4.5032 2.0058 -2.3849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:18 Heat of formation + Delta-G solvation = -76.288279 kcal Electronic energy + Delta-G solvation = -27108.607623 eV Core-core repulsion = 23151.380232 eV Total energy + Delta-G solvation = -3957.227391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52020 -39.31684 -38.02890 -36.77457 -35.42359 -34.91925 -32.79392 -31.70521 -31.24309 -30.08814 -29.05326 -26.78941 -26.11996 -24.23653 -23.39986 -23.05852 -21.18364 -20.43849 -19.83589 -17.92211 -17.13803 -16.80519 -16.39390 -16.22687 -15.91836 -15.67586 -15.53930 -15.24521 -14.90827 -14.41049 -14.18464 -14.05854 -13.76913 -13.75609 -13.52040 -13.06859 -12.78866 -12.61612 -12.30166 -12.01133 -11.90880 -11.80196 -11.58571 -11.52655 -11.32298 -11.07743 -10.86720 -10.67821 -10.57157 -10.18625 -9.95342 -9.78972 -9.37502 -9.31435 -9.20091 -8.99848 -8.88319 -8.34964 -8.20281 -5.92744 -3.94879 0.79958 1.02000 1.85840 2.70981 3.08161 3.37208 3.39432 3.41629 3.44260 3.52488 4.22774 4.47609 4.51077 4.59648 4.76841 4.84786 4.98437 5.00074 5.02819 5.06631 5.13998 5.15080 5.28202 5.35269 5.39439 5.42759 5.45261 5.53480 5.65395 5.82984 5.88546 5.95085 6.14167 6.38510 6.45353 6.47660 6.65325 6.83602 7.09193 7.35246 7.56102 7.76648 7.78999 7.96958 8.13903 8.25541 8.49401 9.12898 9.68229 11.18119 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.002998 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.015267 B = 9338.436096 C =11656.655811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.055 3.945 4 C 0.189 3.811 5 H 0.110 0.890 6 N -0.718 5.718 7 C 0.487 3.513 8 O -0.556 6.556 9 C 0.079 3.921 10 H 0.098 0.902 11 N -0.806 5.806 12 C -0.095 4.095 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.051 0.949 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.083 4.083 23 C -0.075 4.075 24 C -0.108 4.108 25 C -0.033 4.033 26 Cl -0.074 7.074 27 C -0.111 4.111 28 C -0.097 4.097 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.405 0.595 35 H 0.348 0.652 36 H 0.333 0.667 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.013 0.987 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 2.841 -21.235 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.023 4.023 4 C 0.083 3.917 5 H 0.128 0.872 6 N -0.372 5.372 7 C 0.273 3.727 8 O -0.434 6.434 9 C -0.037 4.037 10 H 0.116 0.884 11 N -0.334 5.334 12 C -0.133 4.133 13 C -0.005 4.005 14 C -0.561 4.561 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.084 4.084 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.059 4.059 26 Cl -0.045 7.045 27 C -0.130 4.130 28 C -0.116 4.116 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.242 0.758 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.683 2.805 -20.719 25.549 hybrid contribution 0.446 0.105 -0.970 1.073 sum -14.237 2.909 -21.690 26.107 Atomic orbital electron populations 1.22719 0.81113 1.02739 0.99817 1.87880 1.19520 1.27226 1.95401 1.22945 0.93026 0.85367 1.00983 1.19852 0.92145 0.97320 0.82358 0.87236 1.46233 1.69199 1.12147 1.09579 1.22818 0.75307 0.87712 0.86861 1.90637 1.52227 1.15266 1.85248 1.21844 1.00561 0.96969 0.84297 0.88374 1.58996 1.13913 1.19241 1.41229 1.21658 0.88518 1.01108 1.02061 1.19005 0.95028 0.94682 0.91793 1.21245 0.93556 1.36062 1.05285 0.93045 1.24983 0.97890 0.95879 0.95527 1.69963 1.35506 1.38577 1.09149 0.86719 0.86057 0.78286 0.77264 1.20322 1.21338 1.20353 1.19858 0.99152 0.94270 0.95120 1.20924 0.97191 0.92772 0.98487 1.21069 0.99048 1.00831 0.91764 1.20971 1.02871 0.91817 0.90258 1.98374 1.89785 1.70645 1.45742 1.20981 1.00839 0.91508 0.99691 1.20949 0.98143 1.00163 0.92315 0.94155 0.94287 0.89584 0.92171 0.92466 0.75833 0.83824 0.85508 0.92846 0.92806 0.96881 0.94691 0.93051 0.84618 0.84724 0.84882 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.74 9.11 -35.23 -0.32 -4.06 16 3 C 0.05 0.53 5.73 37.16 0.21 0.74 16 4 C 0.19 1.99 2.61 -69.08 -0.18 1.81 16 5 H 0.11 1.22 7.44 -51.93 -0.39 0.84 16 6 N -0.72 -8.66 4.97 -54.93 -0.27 -8.93 16 7 C 0.49 7.24 7.03 -10.99 -0.08 7.16 16 8 O -0.56 -9.47 15.91 5.55 0.09 -9.39 16 9 C 0.08 1.29 3.15 -68.86 -0.22 1.07 16 10 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 11 N -0.81 -13.24 8.44 -5.65 -0.05 -13.29 16 12 C -0.10 -1.89 4.78 -26.74 -0.13 -2.02 16 13 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 14 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.08 -0.81 4.83 -104.62 -0.51 -1.32 16 23 C -0.08 -0.73 8.06 -39.59 -0.32 -1.05 16 24 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 25 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 26 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.19 16 27 C -0.11 -0.99 9.83 -39.55 -0.39 -1.37 16 28 C -0.10 -0.86 9.67 -39.59 -0.38 -1.24 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.41 4.49 6.85 -40.82 -0.28 4.21 16 35 H 0.35 5.79 8.58 -39.30 -0.34 5.45 16 36 H 0.33 4.73 9.06 -39.29 -0.36 4.37 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.14 1.24 6.67 -52.48 -0.35 0.89 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.13 0.91 8.04 -52.48 -0.42 0.49 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -32.46 393.65 -9.19 -41.65 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.73 Total: 9.34 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.06 Total: -9.66 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.42 Total: -48.38 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.23 Total: -13.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.46 -9.19 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.637 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds