Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00191 * 2 1 4 4 C 1.53001 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47215 * 174.99761 * 4 3 2 6 6 N 1.46496 * 109.46861 * 294.99654 * 4 3 2 7 7 C 1.34772 * 120.00222 * 275.00027 * 6 4 3 8 8 O 1.21283 * 119.99912 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99971 * 180.02562 * 7 6 4 10 10 H 1.09001 * 109.46817 * 319.98961 * 9 7 6 11 11 N 1.46910 * 109.46728 * 199.99907 * 9 7 6 12 12 C 1.52992 * 109.47798 * 79.99728 * 9 7 6 13 13 C 1.52997 * 109.47482 * 185.00026 * 12 9 7 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.50699 * 109.47057 * 55.00047 * 4 3 2 23 23 C 1.38248 * 119.98449 * 279.72632 * 22 4 3 24 24 C 1.38216 * 120.00938 * 179.72872 * 23 22 4 25 25 C 1.38344 * 119.98749 * 0.54615 * 24 23 22 26 26 Cl 1.73604 * 120.01178 * 179.70455 * 25 24 23 27 27 C 1.38352 * 119.97753 * 359.72843 * 25 24 23 28 28 C 1.38217 * 119.98143 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.46982 * 300.00127 * 1 2 3 30 30 H 1.08994 * 109.46917 * 59.99875 * 1 2 3 31 31 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47545 * 59.99618 * 3 2 1 33 33 H 1.09007 * 109.46820 * 300.00362 * 3 2 1 34 34 H 0.97003 * 119.99378 * 95.00171 * 6 4 3 35 35 H 1.00892 * 110.99957 * 299.99600 * 11 9 7 36 36 H 1.00899 * 110.99816 * 63.94833 * 11 9 7 37 37 H 1.09002 * 109.47103 * 64.99779 * 12 9 7 38 38 H 1.08998 * 109.46862 * 305.00591 * 12 9 7 39 39 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 40 40 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 41 41 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99227 * 359.97438 * 23 22 4 43 43 H 1.07997 * 120.00082 * 180.27241 * 24 23 22 44 44 H 1.07995 * 120.01119 * 179.97438 * 27 25 24 45 45 H 1.08005 * 119.98863 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 7 3.9767 0.5640 1.2509 7 6 4.1663 1.3222 2.3489 8 8 3.9721 2.5185 2.3007 9 6 4.6207 0.6839 3.6361 10 1 4.1094 -0.2696 3.7690 11 7 4.3015 1.5717 4.7623 12 6 6.1316 0.4495 3.5838 13 6 6.5736 -0.3103 4.8360 14 6 8.0619 -0.5416 4.7841 15 1 8.6352 -0.1823 3.9424 16 6 8.6917 -1.2112 5.8118 17 7 7.9936 -1.6483 6.8370 18 14 10.5365 -1.4973 5.7478 19 1 11.2385 -0.1900 5.6881 20 1 10.9655 -2.2349 6.9632 21 1 10.8722 -2.2950 4.5410 22 6 3.9714 0.3328 -1.1648 23 6 3.9020 -1.0451 -1.0770 24 6 4.2965 -1.8268 -2.1465 25 6 4.7714 -1.2303 -3.3008 26 17 5.2741 -2.2117 -4.6417 27 6 4.8459 0.1486 -3.3862 28 6 4.4454 0.9293 -2.3183 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 4.1323 -0.3926 1.2892 35 1 4.7638 2.4629 4.6623 36 1 3.3041 1.6904 4.8576 37 1 6.6468 1.4091 3.5402 38 1 6.3780 -0.1356 2.6978 39 1 6.0584 -1.2699 4.8796 40 1 6.3272 0.2749 5.7220 41 1 8.4367 -2.1197 7.5598 42 1 3.5358 -1.5108 -0.1739 43 1 4.2380 -2.9031 -2.0793 44 1 5.2169 0.6148 -4.2869 45 1 4.5032 2.0058 -2.3849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424167683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -98.008253 kcal Electronic energy + Delta-G solvation = -27109.549472 eV Core-core repulsion = 23151.380232 eV Total energy + Delta-G solvation = -3958.169240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49045 -40.26331 -38.78009 -37.49930 -36.83100 -35.99982 -34.79419 -32.55693 -31.99416 -31.88438 -29.81819 -28.13649 -27.12641 -25.62230 -24.38578 -23.90984 -22.48066 -21.63377 -21.10578 -18.97587 -18.30002 -18.05375 -17.57067 -17.25823 -16.97345 -16.58827 -16.53027 -16.36877 -16.08338 -15.86058 -15.28208 -15.11243 -14.90811 -14.49067 -14.41464 -14.26251 -13.94715 -13.75190 -13.56240 -13.40945 -13.30030 -12.76768 -12.59666 -12.51567 -12.48797 -12.31047 -12.24655 -12.03559 -11.77177 -11.74576 -11.63021 -11.24429 -10.99092 -10.65793 -10.47023 -10.22901 -9.99793 -9.69379 -9.51991 -8.12349 -6.22415 0.07217 0.33041 1.14752 1.42636 1.45232 1.50350 1.53333 2.09188 2.45757 2.63350 2.82499 3.20691 3.45019 3.59120 3.78600 3.83930 3.94435 4.02276 4.14770 4.27575 4.33676 4.34214 4.36599 4.48162 4.54146 4.56482 4.58109 4.71548 4.80320 4.86447 4.96346 4.98425 5.17842 5.24267 5.27296 5.30495 5.53879 5.58819 5.78345 5.86632 6.00663 6.10837 6.16494 6.32255 6.43603 6.55350 6.96278 7.11017 7.45574 8.98636 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.002998 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.015267 B = 9338.436096 C =11656.655811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.060 3.940 4 C 0.190 3.810 5 H 0.106 0.894 6 N -0.707 5.707 7 C 0.495 3.505 8 O -0.577 6.577 9 C 0.086 3.914 10 H 0.107 0.893 11 N -0.818 5.818 12 C -0.081 4.081 13 C 0.040 3.960 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.090 4.090 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.043 4.043 26 Cl -0.074 7.074 27 C -0.114 4.114 28 C -0.098 4.098 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.346 0.654 36 H 0.346 0.654 37 H 0.043 0.957 38 H 0.065 0.935 39 H -0.007 1.007 40 H 0.006 0.994 41 H 0.262 0.738 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.919 2.930 -22.968 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.018 4.018 4 C 0.085 3.915 5 H 0.123 0.877 6 N -0.359 5.359 7 C 0.280 3.720 8 O -0.456 6.456 9 C -0.030 4.030 10 H 0.125 0.875 11 N -0.347 5.347 12 C -0.119 4.119 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.091 4.091 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.069 4.069 26 Cl -0.046 7.046 27 C -0.132 4.132 28 C -0.116 4.116 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.012 0.988 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.540 2.878 -22.488 26.933 hybrid contribution 0.340 0.051 -0.460 0.574 sum -14.200 2.929 -22.947 27.144 Atomic orbital electron populations 1.22863 0.79933 1.03651 1.00374 1.87858 1.20831 1.27168 1.95495 1.22856 0.92295 0.85512 1.01154 1.19928 0.92852 0.97080 0.81660 0.87658 1.46141 1.67966 1.12291 1.09509 1.22289 0.75495 0.87281 0.86888 1.90633 1.53475 1.16042 1.85498 1.21615 0.98209 0.97674 0.85516 0.87490 1.58962 1.15021 1.19152 1.41580 1.21375 0.91029 0.99810 0.99725 1.18814 0.93833 0.93824 0.93224 1.21715 0.95143 1.35933 1.05458 0.92657 1.25883 1.02929 0.95598 0.95124 1.70095 1.37583 1.39374 1.09908 0.85621 0.80012 0.78469 0.77645 1.19576 1.20938 1.19166 1.19833 0.99839 0.94199 0.95185 1.20990 0.97432 0.92904 0.98720 1.21210 0.99086 1.01407 0.91763 1.21140 1.03099 0.92319 0.90355 1.98373 1.89787 1.70713 1.45687 1.21216 1.00399 0.91264 1.00332 1.21186 0.97365 1.01256 0.91806 0.94159 0.93154 0.88565 0.93574 0.90682 0.75167 0.84048 0.84048 0.93785 0.91653 0.98844 0.97573 0.92945 0.84431 0.83887 0.83216 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.14 9.11 -148.98 -1.36 -8.50 16 3 C 0.06 1.07 5.73 71.98 0.41 1.48 16 4 C 0.19 3.72 2.61 44.25 0.12 3.84 16 5 H 0.11 2.20 7.44 -2.39 -0.02 2.18 16 6 N -0.71 -16.21 4.97 -446.11 -2.22 -18.43 16 7 C 0.49 14.30 7.03 87.66 0.62 14.92 16 8 O -0.58 -19.21 15.91 -3.04 -0.05 -19.26 16 9 C 0.09 2.76 3.15 44.16 0.14 2.90 16 10 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 11 N -0.82 -26.94 8.44 -171.79 -1.45 -28.39 16 12 C -0.08 -3.22 4.78 30.59 0.15 -3.07 16 13 C 0.04 2.08 4.86 29.85 0.15 2.23 16 14 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 15 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.09 -1.61 4.83 -19.86 -0.10 -1.70 16 23 C -0.08 -1.48 8.06 22.27 0.18 -1.30 16 24 C -0.12 -2.06 9.83 22.29 0.22 -1.84 16 25 C -0.04 -0.75 6.32 22.32 0.14 -0.61 16 26 Cl -0.07 -1.28 28.96 -2.72 -0.08 -1.36 16 27 C -0.11 -1.78 9.83 22.29 0.22 -1.56 16 28 C -0.10 -1.52 9.67 22.26 0.22 -1.30 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.41 8.59 6.85 -92.71 -0.64 7.96 16 35 H 0.35 11.59 8.58 -89.70 -0.77 10.82 16 36 H 0.35 9.72 9.06 -89.69 -0.81 8.90 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.01 0.33 7.75 -2.39 -0.02 0.32 16 41 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.14 2.36 6.67 -2.91 -0.02 2.34 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.15 1.70 8.04 -2.91 -0.02 1.68 16 Total: -1.00 -68.97 393.65 0.36 -68.60 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.19 Total: 31.70 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.40 Total: -14.46 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -3.38 Total: -103.24 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.41 Total: -27.76 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -68.97 0.36 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.403 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds