Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47407 * 2 1 4 4 C 1.35902 * 117.00320 * 180.02562 * 3 2 1 5 5 C 1.38734 * 120.04563 * 0.02562 * 4 3 2 6 6 C 1.38237 * 119.92799 * 179.97438 * 5 4 3 7 7 Cl 1.73607 * 119.98248 * 179.97438 * 6 5 4 8 8 C 1.38404 * 120.03165 * 359.72490 * 6 5 4 9 9 C 1.38225 * 120.09777 * 0.55575 * 8 6 5 10 10 C 1.38174 * 120.06526 * 359.44126 * 9 8 6 11 11 C 1.50700 * 120.01391 * 180.25748 * 10 9 8 12 12 N 1.46499 * 109.47299 * 260.00185 * 11 10 9 13 13 C 1.34779 * 120.00349 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99577 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00217 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47408 * 40.00598 * 15 13 12 17 17 N 1.46899 * 109.47251 * 160.00679 * 15 13 12 18 18 C 1.52999 * 109.47251 * 280.00486 * 15 13 12 19 19 C 1.53009 * 109.47061 * 175.00108 * 18 15 13 20 20 C 1.50697 * 109.46873 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00338 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00058 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00010 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46913 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47418 * 119.99832 * 24 22 20 27 27 H 1.48504 * 109.47121 * 240.00054 * 24 22 20 28 28 H 1.09002 * 109.47226 * 59.99662 * 1 2 3 29 29 H 1.08994 * 109.47472 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46844 * 300.00450 * 1 2 3 31 31 H 1.09004 * 109.46967 * 240.00274 * 2 1 3 32 32 H 1.09002 * 109.47226 * 120.00338 * 2 1 3 33 33 H 1.07995 * 120.03332 * 359.95391 * 5 4 3 34 34 H 1.08001 * 119.95204 * 180.29276 * 8 6 5 35 35 H 1.08002 * 119.97018 * 179.72740 * 9 8 6 36 36 H 1.08998 * 109.46984 * 20.00563 * 11 10 9 37 37 H 1.09000 * 109.47105 * 140.00459 * 11 10 9 38 38 H 0.97000 * 119.99694 * 0.02562 * 12 11 10 39 39 H 1.00906 * 110.99674 * 296.04766 * 17 15 13 40 40 H 1.00899 * 111.00368 * 59.99753 * 17 15 13 41 41 H 1.08996 * 109.47434 * 294.99951 * 18 15 13 42 42 H 1.09005 * 109.47267 * 55.00182 * 18 15 13 43 43 H 1.09003 * 109.46577 * 299.99565 * 19 18 15 44 44 H 1.08991 * 109.47111 * 59.99844 * 19 18 15 45 45 H 0.97002 * 120.00067 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1997 0.4258 -0.0016 6 6 5.5698 0.6097 -0.0027 7 17 6.6297 -0.7652 -0.0033 8 6 6.0968 1.8895 -0.0085 9 6 5.2551 2.9858 -0.0016 10 6 3.8850 2.8067 -0.0005 11 6 2.9684 4.0028 0.0011 12 7 2.4821 4.2436 1.3619 13 6 1.6428 5.2695 1.6061 14 8 1.2897 5.9931 0.6990 15 6 1.1422 5.5168 3.0057 16 1 1.9532 5.3545 3.7157 17 7 0.6636 6.9012 3.1172 18 6 -0.0060 4.5539 3.3143 19 6 -0.4315 4.7188 4.7748 20 6 -1.5620 3.7700 5.0788 21 1 -1.9391 3.1145 4.3078 22 6 -2.1143 3.7378 6.3418 23 7 -1.6541 4.5349 7.2812 24 14 -3.5152 2.5611 6.7190 25 1 -3.8455 1.7782 5.5011 26 1 -3.1059 1.6365 7.8065 27 1 -4.7084 3.3337 7.1489 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7883 -0.5728 -0.0012 34 1 7.1674 2.0317 -0.0141 35 1 5.6686 3.9835 -0.0017 36 1 3.5135 4.8788 -0.3503 37 1 2.1219 3.8128 -0.6588 38 1 2.7648 3.6651 2.0874 39 1 1.4185 7.5568 2.9812 40 1 -0.0891 7.0769 2.4686 41 1 -0.8511 4.7754 2.6625 42 1 0.3241 3.5288 3.1456 43 1 0.4137 4.4972 5.4265 44 1 -0.7615 5.7438 4.9435 45 1 -2.0424 4.5121 8.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424176167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = -76.618355 kcal Electronic energy + Delta-G solvation = -26987.201491 eV Core-core repulsion = 23029.959787 eV Total energy + Delta-G solvation = -3957.241704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82880 -39.56913 -38.15086 -36.87642 -35.32802 -34.78483 -32.77602 -32.22886 -31.49586 -30.12892 -30.01859 -27.12647 -25.60432 -24.46566 -23.38250 -22.22288 -21.64056 -20.61952 -19.77188 -18.68836 -17.25712 -16.78145 -16.55383 -16.24788 -16.19194 -15.81457 -15.41929 -15.08802 -14.60907 -14.40634 -14.10291 -14.07657 -13.89577 -13.61550 -13.29586 -12.98232 -12.91112 -12.77214 -12.30780 -12.13321 -12.06935 -11.92536 -11.70767 -11.49491 -11.37407 -11.29869 -10.95680 -10.90883 -10.65381 -10.51098 -10.11825 -9.77716 -9.36140 -9.30089 -9.00761 -8.95895 -8.65402 -8.31112 -8.15235 -5.92865 -3.94675 0.59551 0.90434 1.66511 2.80187 2.84628 3.01592 3.33705 3.41319 3.44722 3.59134 4.27964 4.31646 4.50586 4.58695 4.61548 4.65359 4.77174 4.93678 4.95548 5.02157 5.14662 5.21582 5.29168 5.42760 5.43572 5.57835 5.59300 5.61346 5.67408 5.78096 5.88599 5.91898 6.00621 6.19154 6.45105 6.50901 6.69928 6.96615 7.12307 7.42561 7.65934 7.78271 7.83941 7.98432 8.15148 8.37869 8.50252 9.13629 9.68264 11.18131 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.002787 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.309332 B =10043.379673 C =11321.982990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.299 6.299 4 C 0.165 3.835 5 C -0.206 4.206 6 C 0.012 3.988 7 Cl -0.067 7.067 8 C -0.152 4.152 9 C -0.049 4.049 10 C -0.137 4.137 11 C 0.171 3.829 12 N -0.722 5.722 13 C 0.484 3.516 14 O -0.556 6.556 15 C 0.079 3.921 16 H 0.097 0.903 17 N -0.807 5.807 18 C -0.094 4.094 19 C 0.031 3.969 20 C -0.520 4.520 21 H 0.052 0.948 22 C 0.057 3.943 23 N -0.892 5.892 24 Si 0.888 3.112 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.284 1.284 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.333 0.667 40 H 0.348 0.652 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.035 0.965 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.650 -8.947 -17.554 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 O -0.211 6.211 4 C 0.118 3.882 5 C -0.225 4.225 6 C -0.015 4.015 7 Cl -0.038 7.038 8 C -0.171 4.171 9 C -0.068 4.068 10 C -0.138 4.138 11 C 0.047 3.953 12 N -0.375 5.375 13 C 0.270 3.730 14 O -0.434 6.434 15 C -0.037 4.037 16 H 0.115 0.885 17 N -0.335 5.335 18 C -0.132 4.132 19 C -0.006 4.006 20 C -0.559 4.559 21 H 0.070 0.930 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.716 3.284 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.066 -8.541 -17.274 25.089 hybrid contribution -0.034 -1.416 -0.430 1.480 sum 16.032 -9.957 -17.704 25.876 Atomic orbital electron populations 1.21795 0.92027 1.03098 1.04267 1.22912 0.96603 0.81271 1.01422 1.86221 1.17610 1.29858 1.87450 1.18683 0.83001 0.92730 0.93798 1.21101 0.92103 0.99367 1.09971 1.20690 0.90488 0.88686 1.01615 1.98386 1.65526 1.43151 1.96697 1.20951 1.00887 0.90184 1.05104 1.20915 0.91213 0.99181 0.95482 1.19393 0.94253 0.92327 1.07865 1.19932 0.96255 0.93643 0.85473 1.46173 1.48970 1.32460 1.09870 1.22729 0.77141 0.79432 0.93679 1.90642 1.57914 1.47771 1.47047 1.21825 0.99905 0.92195 0.89776 0.88545 1.59008 1.13564 1.01544 1.59349 1.21637 0.94212 0.95074 1.02275 1.19020 0.95743 0.98166 0.87684 1.21315 1.17586 1.20949 0.96001 0.92968 1.24993 0.97020 0.95836 0.96517 1.69983 1.42035 1.38232 1.02937 0.86613 0.82552 0.81076 0.78185 1.19873 1.21132 1.21066 0.91477 0.90196 0.90660 0.92002 0.91587 0.84184 0.84539 0.84054 0.90865 0.90395 0.76321 0.85509 0.83847 0.92901 0.92860 0.96935 0.94686 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.45 5.46 37.16 0.20 0.66 16 3 O -0.30 -3.35 9.37 -19.43 -0.18 -3.53 16 4 C 0.17 1.70 6.66 -39.22 -0.26 1.44 16 5 C -0.21 -1.88 8.82 -39.40 -0.35 -2.23 16 6 C 0.01 0.11 6.32 -39.52 -0.25 -0.14 16 7 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 8 C -0.15 -1.20 9.83 -39.52 -0.39 -1.59 16 9 C -0.05 -0.39 9.66 -39.61 -0.38 -0.78 16 10 C -0.14 -1.35 5.26 -104.47 -0.55 -1.90 16 11 C 0.17 1.97 5.46 -5.19 -0.03 1.94 16 12 N -0.72 -9.32 5.55 -61.47 -0.34 -9.66 16 13 C 0.48 7.70 7.07 -10.99 -0.08 7.62 16 14 O -0.56 -10.30 16.25 5.55 0.09 -10.21 16 15 C 0.08 1.33 3.15 -68.87 -0.22 1.12 16 16 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 17 N -0.81 -13.72 8.44 -5.66 -0.05 -13.77 16 18 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 19 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 20 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 24 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.86 8.04 -52.49 -0.42 0.43 16 36 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 37 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 38 H 0.40 4.75 8.46 -40.82 -0.35 4.41 16 39 H 0.33 4.90 9.06 -39.29 -0.36 4.55 16 40 H 0.35 6.01 8.58 -39.29 -0.34 5.68 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -32.95 395.36 -9.64 -42.58 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.74 Total: 9.88 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.59 Total: -9.65 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.35 Total: -49.63 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.95 -9.64 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424176167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.036 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds