Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47407 * 2 1 4 4 C 1.35902 * 117.00320 * 180.02562 * 3 2 1 5 5 C 1.38734 * 120.04563 * 0.02562 * 4 3 2 6 6 C 1.38237 * 119.92799 * 179.97438 * 5 4 3 7 7 Cl 1.73607 * 119.98248 * 179.97438 * 6 5 4 8 8 C 1.38404 * 120.03165 * 359.72490 * 6 5 4 9 9 C 1.38225 * 120.09777 * 0.55575 * 8 6 5 10 10 C 1.38174 * 120.06526 * 359.44126 * 9 8 6 11 11 C 1.50700 * 120.01391 * 180.25748 * 10 9 8 12 12 N 1.46499 * 109.47299 * 260.00185 * 11 10 9 13 13 C 1.34779 * 120.00349 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99577 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00217 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47408 * 40.00598 * 15 13 12 17 17 N 1.46899 * 109.47251 * 160.00679 * 15 13 12 18 18 C 1.52999 * 109.47251 * 280.00486 * 15 13 12 19 19 C 1.53009 * 109.47061 * 175.00108 * 18 15 13 20 20 C 1.50697 * 109.46873 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00338 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00058 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00010 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46913 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47418 * 119.99832 * 24 22 20 27 27 H 1.48504 * 109.47121 * 240.00054 * 24 22 20 28 28 H 1.09002 * 109.47226 * 59.99662 * 1 2 3 29 29 H 1.08994 * 109.47472 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46844 * 300.00450 * 1 2 3 31 31 H 1.09004 * 109.46967 * 240.00274 * 2 1 3 32 32 H 1.09002 * 109.47226 * 120.00338 * 2 1 3 33 33 H 1.07995 * 120.03332 * 359.95391 * 5 4 3 34 34 H 1.08001 * 119.95204 * 180.29276 * 8 6 5 35 35 H 1.08002 * 119.97018 * 179.72740 * 9 8 6 36 36 H 1.08998 * 109.46984 * 20.00563 * 11 10 9 37 37 H 1.09000 * 109.47105 * 140.00459 * 11 10 9 38 38 H 0.97000 * 119.99694 * 0.02562 * 12 11 10 39 39 H 1.00906 * 110.99674 * 296.04766 * 17 15 13 40 40 H 1.00899 * 111.00368 * 59.99753 * 17 15 13 41 41 H 1.08996 * 109.47434 * 294.99951 * 18 15 13 42 42 H 1.09005 * 109.47267 * 55.00182 * 18 15 13 43 43 H 1.09003 * 109.46577 * 299.99565 * 19 18 15 44 44 H 1.08991 * 109.47111 * 59.99844 * 19 18 15 45 45 H 0.97002 * 120.00067 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1997 0.4258 -0.0016 6 6 5.5698 0.6097 -0.0027 7 17 6.6297 -0.7652 -0.0033 8 6 6.0968 1.8895 -0.0085 9 6 5.2551 2.9858 -0.0016 10 6 3.8850 2.8067 -0.0005 11 6 2.9684 4.0028 0.0011 12 7 2.4821 4.2436 1.3619 13 6 1.6428 5.2695 1.6061 14 8 1.2897 5.9931 0.6990 15 6 1.1422 5.5168 3.0057 16 1 1.9532 5.3545 3.7157 17 7 0.6636 6.9012 3.1172 18 6 -0.0060 4.5539 3.3143 19 6 -0.4315 4.7188 4.7748 20 6 -1.5620 3.7700 5.0788 21 1 -1.9391 3.1145 4.3078 22 6 -2.1143 3.7378 6.3418 23 7 -1.6541 4.5349 7.2812 24 14 -3.5152 2.5611 6.7190 25 1 -3.8455 1.7782 5.5011 26 1 -3.1059 1.6365 7.8065 27 1 -4.7084 3.3337 7.1489 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7883 -0.5728 -0.0012 34 1 7.1674 2.0317 -0.0141 35 1 5.6686 3.9835 -0.0017 36 1 3.5135 4.8788 -0.3503 37 1 2.1219 3.8128 -0.6588 38 1 2.7648 3.6651 2.0874 39 1 1.4185 7.5568 2.9812 40 1 -0.0891 7.0769 2.4686 41 1 -0.8511 4.7754 2.6625 42 1 0.3241 3.5288 3.1456 43 1 0.4137 4.4972 5.4265 44 1 -0.7615 5.7438 4.9435 45 1 -2.0424 4.5121 8.1698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424176167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = -98.797729 kcal Electronic energy + Delta-G solvation = -26988.163261 eV Core-core repulsion = 23029.959787 eV Total energy + Delta-G solvation = -3958.203474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60246 -40.80148 -38.85358 -37.57893 -36.82491 -35.93171 -34.79537 -32.95945 -32.28357 -31.90390 -30.80385 -28.48615 -27.04362 -25.18513 -24.95229 -22.94888 -22.47744 -22.22679 -21.16068 -19.42261 -18.70124 -18.06149 -17.59409 -17.43852 -17.12470 -16.80102 -16.68224 -16.41283 -15.94136 -15.67607 -15.29423 -14.95188 -14.77726 -14.65919 -14.31856 -14.26460 -13.90378 -13.73201 -13.68660 -13.47248 -13.38190 -12.84083 -12.81888 -12.72967 -12.51261 -12.39162 -12.22294 -12.01136 -12.00402 -11.75868 -11.65025 -11.61069 -11.23882 -10.98359 -10.48835 -10.13674 -10.00039 -9.62505 -9.27448 -8.12984 -6.22988 -0.10202 0.24344 1.01053 1.41350 1.42494 1.53506 1.55720 2.12692 2.14738 2.45018 2.64778 3.20060 3.53077 3.60810 3.64141 3.87943 3.92923 3.99517 4.00889 4.09947 4.13090 4.31573 4.32718 4.34526 4.49568 4.56457 4.71350 4.79717 4.83196 4.89193 4.92636 4.96748 5.13657 5.20675 5.26097 5.28653 5.38416 5.55148 5.58402 5.85736 5.99945 6.11761 6.26574 6.31906 6.46823 6.56488 6.95643 7.15416 7.44942 8.98478 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.002787 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.309332 B =10043.379673 C =11321.982990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 O -0.322 6.322 4 C 0.152 3.848 5 C -0.209 4.209 6 C 0.006 3.994 7 Cl -0.063 7.063 8 C -0.150 4.150 9 C -0.042 4.042 10 C -0.147 4.147 11 C 0.175 3.825 12 N -0.708 5.708 13 C 0.491 3.509 14 O -0.582 6.582 15 C 0.086 3.914 16 H 0.109 0.891 17 N -0.818 5.818 18 C -0.079 4.079 19 C 0.040 3.960 20 C -0.541 4.541 21 H 0.055 0.945 22 C 0.002 3.998 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.281 1.281 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.347 0.653 40 H 0.345 0.655 41 H 0.041 0.959 42 H 0.062 0.938 43 H -0.007 1.007 44 H 0.006 0.994 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.756 -10.319 -18.273 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.236 6.236 4 C 0.105 3.895 5 C -0.229 4.229 6 C -0.021 4.021 7 Cl -0.034 7.034 8 C -0.168 4.168 9 C -0.060 4.060 10 C -0.149 4.149 11 C 0.052 3.948 12 N -0.359 5.359 13 C 0.276 3.724 14 O -0.463 6.463 15 C -0.030 4.030 16 H 0.127 0.873 17 N -0.347 5.347 18 C -0.117 4.117 19 C 0.003 3.997 20 C -0.579 4.579 21 H 0.073 0.927 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.784 3.216 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.207 1.207 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.245 0.755 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.012 0.988 44 H 0.024 0.976 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.205 -9.940 -18.002 26.813 hybrid contribution -0.313 -1.016 -0.218 1.085 sum 16.893 -10.956 -18.220 27.155 Atomic orbital electron populations 1.21811 0.92375 1.04082 1.02793 1.23066 0.96339 0.80620 1.02609 1.86190 1.18317 1.31270 1.87784 1.18838 0.82856 0.93286 0.94531 1.21201 0.92264 0.99553 1.09841 1.20860 0.90512 0.89285 1.01469 1.98390 1.65277 1.43029 1.96655 1.21218 1.01968 0.89659 1.04004 1.21149 0.90313 1.00399 0.94183 1.19340 0.94754 0.91456 1.09307 1.19920 0.96009 0.94923 0.83949 1.46085 1.47673 1.31208 1.10958 1.22312 0.77536 0.79918 0.92605 1.90635 1.59179 1.48986 1.47465 1.21616 0.98846 0.91442 0.91080 0.87310 1.58979 1.14249 1.01967 1.59506 1.21351 0.95189 0.96688 0.98498 1.18823 0.94411 0.95886 0.90581 1.21746 1.18419 1.21417 0.96357 0.92715 1.25896 0.99764 0.97582 0.96369 1.70110 1.43579 1.39882 1.03434 0.85500 0.78944 0.78833 0.78363 1.18739 1.20270 1.20705 0.91947 0.88031 0.93014 0.90184 0.90940 0.83217 0.82499 0.81833 0.89868 0.92296 0.75503 0.83959 0.84155 0.94061 0.91908 0.98830 0.97551 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.05 0.78 5.46 71.98 0.39 1.18 16 3 O -0.32 -7.09 9.37 -92.44 -0.87 -7.96 16 4 C 0.15 2.97 6.66 22.50 0.15 3.12 16 5 C -0.21 -3.50 8.82 22.39 0.20 -3.30 16 6 C 0.01 0.09 6.32 22.31 0.14 0.23 16 7 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.99 16 8 C -0.15 -1.98 9.83 22.31 0.22 -1.76 16 9 C -0.04 -0.57 9.66 22.25 0.22 -0.36 16 10 C -0.15 -2.70 5.26 -19.77 -0.10 -2.80 16 11 C 0.18 3.87 5.46 85.63 0.47 4.34 16 12 N -0.71 -17.59 5.55 -466.79 -2.59 -20.18 16 13 C 0.49 15.31 7.07 87.65 0.62 15.93 16 14 O -0.58 -21.38 16.25 -3.05 -0.05 -21.43 16 15 C 0.09 2.89 3.15 44.17 0.14 3.03 16 16 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 17 N -0.82 -27.93 8.44 -171.81 -1.45 -29.38 16 18 C -0.08 -3.24 4.78 30.60 0.15 -3.09 16 19 C 0.04 2.10 4.86 29.85 0.15 2.25 16 20 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 21 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 22 C 0.00 0.09 5.46 84.66 0.46 0.56 16 23 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 24 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 0.99 7.66 -2.38 -0.02 0.98 16 32 H 0.07 1.06 7.66 -2.39 -0.02 1.05 16 33 H 0.15 2.10 6.30 -2.91 -0.02 2.08 16 34 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.16 1.45 8.04 -2.91 -0.02 1.43 16 36 H 0.08 1.69 8.00 -2.39 -0.02 1.67 16 37 H 0.06 1.55 7.85 -2.39 -0.02 1.54 16 38 H 0.41 9.16 8.46 -92.71 -0.78 8.38 16 39 H 0.35 10.07 9.06 -89.69 -0.81 9.26 16 40 H 0.34 12.09 8.58 -89.69 -0.77 11.32 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 45 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -70.91 395.36 0.11 -70.81 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -1.33 Total: 32.37 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.16 Total: -13.18 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.75 Total: -106.09 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.92 Total: -29.39 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -70.91 0.11 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424176167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.991 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds