Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 110.54499 * 2 1 4 4 O 1.42100 * 110.54074 * 223.25088 * 2 1 3 5 5 N 1.65600 * 104.45303 * 111.62677 * 2 1 3 6 6 C 1.39674 * 119.99802 * 298.76311 * 5 2 1 7 7 C 1.38932 * 120.07546 * 313.82915 * 6 5 2 8 8 C 1.38083 * 119.92204 * 179.97438 * 7 6 5 9 9 C 1.38304 * 120.07733 * 359.73340 * 8 7 6 10 10 C 1.38269 * 120.14830 * 0.54227 * 9 8 7 11 11 C 1.50700 * 119.95960 * 179.72957 * 10 9 8 12 12 N 1.46899 * 109.47003 * 269.72491 * 11 10 9 13 13 C 1.47441 * 110.99977 * 69.87531 * 12 11 10 14 14 C 1.54319 * 107.23591 * 236.74193 * 13 12 11 15 15 C 1.55139 * 103.01731 * 337.71675 * 14 13 12 16 16 O 1.42899 * 110.99417 * 277.55831 * 15 14 13 17 17 C 1.50707 * 110.98898 * 153.74397 * 15 14 13 18 18 H 1.08003 * 119.99702 * 247.73356 * 17 15 14 19 19 C 1.37875 * 119.99886 * 67.73295 * 17 15 14 20 20 N 1.31511 * 120.00253 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99644 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46889 * 90.00249 * 21 19 17 23 23 H 1.48495 * 109.47065 * 209.99567 * 21 19 17 24 24 H 1.48494 * 109.47494 * 330.00364 * 21 19 17 25 25 C 1.47842 * 110.99990 * 309.03424 * 12 11 10 26 26 C 1.38120 * 120.07283 * 359.45581 * 10 9 8 27 27 H 1.09001 * 109.46897 * 313.38974 * 1 2 3 28 28 H 1.09000 * 109.47536 * 73.38502 * 1 2 3 29 29 H 1.08999 * 109.47246 * 193.39236 * 1 2 3 30 30 H 0.96994 * 119.99976 * 118.75846 * 5 2 1 31 31 H 1.08000 * 120.03830 * 359.96458 * 7 6 5 32 32 H 1.08002 * 119.95959 * 180.02562 * 8 7 6 33 33 H 1.08001 * 119.92561 * 180.29598 * 9 8 7 34 34 H 1.09000 * 109.46784 * 149.72821 * 11 10 9 35 35 H 1.09004 * 109.47116 * 29.72566 * 11 10 9 36 36 H 1.09002 * 109.88952 * 356.14763 * 13 12 11 37 37 H 1.09004 * 109.89024 * 117.33540 * 13 12 11 38 38 H 1.09005 * 110.70217 * 96.09862 * 14 13 12 39 39 H 1.09001 * 110.70526 * 219.33298 * 14 13 12 40 40 H 0.96697 * 113.99620 * 292.27404 * 16 15 14 41 41 H 0.96997 * 119.99751 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.37603 * 265.19001 * 25 12 11 43 43 H 1.09003 * 110.37821 * 27.42427 * 25 12 11 44 44 H 1.07999 * 120.03567 * 180.29542 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8379 0.0919 2.6452 7 6 2.0062 1.4684 2.7300 8 6 1.6197 2.1405 3.8726 9 6 1.0605 1.4458 4.9297 10 6 0.8969 0.0751 4.8509 11 6 0.2928 -0.6785 6.0077 12 7 1.3592 -1.1108 6.9209 13 6 1.9493 0.0411 7.6271 14 6 3.4638 0.0318 7.3315 15 6 3.7347 -1.4451 6.9416 16 8 3.8999 -2.2595 8.1041 17 6 4.9337 -1.5528 6.0348 18 1 4.8069 -1.8551 5.0057 19 6 6.1922 -1.2655 6.5190 20 7 6.3465 -0.8979 7.7723 21 14 7.6783 -1.3997 5.3953 22 1 7.9102 -0.0958 4.7234 23 1 8.8742 -1.7628 6.1973 24 1 7.4320 -2.4470 4.3717 25 6 2.4331 -1.8132 6.1866 26 6 1.2813 -0.6034 3.7109 27 1 -0.3633 0.7060 0.7468 28 1 -0.3634 0.2938 -0.9847 29 1 -0.3634 -0.9997 0.2380 30 1 2.7397 -1.4115 1.5621 31 1 2.4389 2.0121 1.9032 32 1 1.7498 3.2106 3.9390 33 1 0.7547 1.9746 5.8204 34 1 -0.2411 -1.5519 5.6332 35 1 -0.4015 -0.0294 6.5413 36 1 1.5057 0.9672 7.2613 37 1 1.7802 -0.0552 8.6997 38 1 3.6986 0.6988 6.5019 39 1 4.0317 0.3061 8.2206 40 1 4.7012 -2.0656 8.6095 41 1 7.2319 -0.6954 8.1127 42 1 2.2700 -2.8905 6.2145 43 1 2.4790 -1.4636 5.1551 44 1 1.1488 -1.6734 3.6481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -102.626688 kcal Electronic energy + Delta-G solvation = -28846.257019 eV Core-core repulsion = 24889.931215 eV Total energy + Delta-G solvation = -3956.325804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22950 -39.55785 -38.25591 -37.16864 -36.91523 -35.64233 -34.09286 -32.94692 -30.89450 -30.35860 -30.14696 -29.53883 -27.25916 -25.58995 -23.51515 -22.77638 -21.56680 -21.22806 -20.33745 -19.10036 -18.86253 -18.32359 -17.35154 -17.25887 -16.90647 -16.78624 -16.44490 -16.25410 -16.05405 -15.66785 -15.03960 -14.67611 -14.52547 -14.14547 -14.10986 -14.07062 -13.91677 -13.65927 -13.42526 -13.33671 -13.27891 -13.13242 -13.00093 -12.69270 -12.60552 -12.45543 -12.34257 -12.29756 -12.16449 -12.10638 -11.96813 -11.58044 -11.37727 -11.09868 -10.59460 -10.03685 -9.70178 -9.38733 -9.01337 -8.23011 -6.36474 -0.84125 0.35555 0.43602 1.35469 1.38666 1.46641 1.54619 2.35220 2.70317 2.75521 3.02369 3.17282 3.32364 3.87989 3.90266 3.97171 4.07288 4.09224 4.14447 4.20821 4.27556 4.31303 4.43338 4.54664 4.58012 4.78468 4.85020 4.87951 4.90419 5.00714 5.05039 5.13210 5.15491 5.34208 5.38891 5.51980 5.55394 5.61080 5.64188 5.83060 5.85207 6.00309 6.15305 6.24399 6.35250 6.68941 7.34992 7.54292 8.82606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.004424 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.469325 B = 6328.194895 C = 7823.353907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.612 3.388 3 O -0.987 6.987 4 O -0.991 6.991 5 N -1.058 6.058 6 C 0.135 3.865 7 C -0.168 4.168 8 C -0.101 4.101 9 C -0.120 4.120 10 C -0.103 4.103 11 C 0.084 3.916 12 N -0.521 5.521 13 C 0.048 3.952 14 C -0.133 4.133 15 C 0.234 3.766 16 O -0.593 6.593 17 C -0.551 4.551 18 H 0.052 0.948 19 C 0.033 3.967 20 N -0.914 5.914 21 Si 0.949 3.051 22 H -0.279 1.279 23 H -0.279 1.279 24 H -0.272 1.272 25 C 0.052 3.948 26 C -0.123 4.123 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.429 0.571 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.374 0.626 41 H 0.269 0.731 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.123 5.048 -11.002 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.710 3.290 3 O -0.977 6.977 4 O -0.982 6.982 5 N -0.808 5.808 6 C 0.040 3.960 7 C -0.189 4.189 8 C -0.119 4.119 9 C -0.140 4.140 10 C -0.105 4.105 11 C -0.044 4.044 12 N -0.243 5.243 13 C -0.079 4.079 14 C -0.172 4.172 15 C 0.194 3.806 16 O -0.402 6.402 17 C -0.590 4.590 18 H 0.071 0.929 19 C -0.167 4.167 20 N -0.554 5.554 21 Si 0.775 3.225 22 H -0.205 1.205 23 H -0.205 1.205 24 H -0.196 1.196 25 C -0.075 4.075 26 C -0.146 4.146 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.171 0.829 30 H 0.267 0.733 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.244 4.871 -11.459 20.467 hybrid contribution 2.055 0.193 -0.375 2.097 sum -14.190 5.064 -11.834 19.158 Atomic orbital electron populations 1.30251 1.21878 1.13977 1.13701 1.04786 0.79791 0.73013 0.71419 1.93532 1.79247 1.39460 1.85419 1.93582 1.80234 1.62272 1.62104 1.53198 1.68139 1.38914 1.20599 1.17383 0.99106 0.91230 0.88324 1.21947 1.02293 0.93727 1.00956 1.21275 0.97157 1.01113 0.92395 1.21356 0.99932 0.93674 0.99002 1.20638 0.99549 0.94637 0.95701 1.21606 0.93914 0.99272 0.89575 1.63899 1.11463 1.22997 1.25920 1.22795 0.93718 0.92750 0.98638 1.23000 0.95012 0.99687 0.99523 1.19790 0.91503 0.86261 0.83080 1.86095 1.48270 1.63977 1.41840 1.21817 0.93057 1.46585 0.97512 0.92926 1.25588 1.01181 0.93571 0.96405 1.69655 1.24175 1.46642 1.14947 0.85703 0.79359 0.78317 0.79130 1.20506 1.20464 1.19648 1.23174 0.89481 0.97905 0.96954 1.21187 0.99692 1.00557 0.93132 0.83847 0.82653 0.82925 0.73333 0.83465 0.83688 0.84432 0.88725 0.88050 0.90996 0.92005 0.93944 0.93630 0.77579 0.92175 0.92610 0.90653 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.00 10.74 113.37 1.22 -4.78 16 2 S 2.61 51.08 6.00 -56.49 -0.34 50.74 16 3 O -0.99 -25.96 15.18 -127.65 -1.94 -27.90 16 4 O -0.99 -25.90 18.08 -127.65 -2.31 -28.21 16 5 N -1.06 -23.02 5.67 -51.37 -0.29 -23.32 16 6 C 0.14 3.38 6.02 38.22 0.23 3.61 16 7 C -0.17 -4.38 9.24 22.40 0.21 -4.18 16 8 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 9 C -0.12 -2.89 8.62 22.29 0.19 -2.70 16 10 C -0.10 -2.61 4.21 -19.88 -0.08 -2.69 16 11 C 0.08 2.11 5.52 85.56 0.47 2.58 16 12 N -0.52 -18.11 5.41 -890.09 -4.82 -22.93 16 13 C 0.05 1.74 6.40 86.65 0.55 2.30 16 14 C -0.13 -6.03 5.63 31.77 0.18 -5.85 16 15 C 0.23 11.54 0.89 -10.15 -0.01 11.53 16 16 O -0.59 -31.83 13.18 -148.98 -1.96 -33.80 16 17 C -0.55 -29.60 8.25 25.60 0.21 -29.39 16 18 H 0.05 2.81 7.77 -2.91 -0.02 2.79 16 19 C 0.03 1.74 5.29 84.65 0.45 2.19 16 20 N -0.91 -49.55 10.77 21.45 0.23 -49.32 16 21 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.05 2.14 5.62 86.77 0.49 2.63 16 26 C -0.12 -3.10 7.33 22.40 0.16 -2.93 16 27 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.43 8.88 8.92 -96.75 -0.86 8.01 16 31 H 0.15 3.99 5.64 -2.91 -0.02 3.98 16 32 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.14 2.81 6.90 -2.91 -0.02 2.79 16 34 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.10 2.10 7.98 -2.38 -0.02 2.08 16 36 H 0.07 2.14 5.20 -2.39 -0.01 2.13 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.04 1.99 8.03 -2.38 -0.02 1.97 16 39 H 0.04 2.25 7.83 -2.39 -0.02 2.24 16 40 H 0.37 20.73 6.93 -74.06 -0.51 20.21 16 41 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 2.92 4.02 -2.39 -0.01 2.91 16 44 H 0.14 3.10 7.85 -2.91 -0.02 3.07 16 Total: -1.00 -71.72 361.18 -5.23 -76.95 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.33 Total: 42.52 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 4.50 Total: -29.86 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -4.88 Total: -95.57 kcal Atomic # 8 Polarization: -83.70 SS G_CDS: -6.21 Total: -89.91 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.34 Total: 50.74 kcal Total: -71.72 -5.23 -76.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.672 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds