Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42892 * 109.47421 * 2 1 4 4 C 1.42905 * 114.00022 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47158 * 329.99778 * 4 3 2 6 6 C 1.52996 * 109.47207 * 89.99723 * 4 3 2 7 7 C 1.50702 * 109.47007 * 209.99908 * 4 3 2 8 8 N 1.29425 * 124.80506 * 314.97478 * 7 4 3 9 9 C 1.30942 * 117.36409 * 180.02562 * 8 7 4 10 10 C 1.35662 * 114.19353 * 359.97438 * 9 8 7 11 11 C 1.46675 * 126.13324 * 179.97438 * 10 9 8 12 12 O 1.21692 * 119.99839 * 354.53337 * 11 10 9 13 13 N 1.34770 * 120.00269 * 174.53281 * 11 10 9 14 14 C 1.47024 * 125.64680 * 4.91276 * 13 11 10 15 15 C 1.54331 * 107.27024 * 181.02372 * 14 13 11 16 16 C 1.55152 * 102.94202 * 22.19430 * 15 14 13 17 17 O 1.42898 * 111.00902 * 82.57298 * 16 15 14 18 18 C 1.50702 * 111.00199 * 206.38545 * 16 15 14 19 19 H 1.08003 * 119.99997 * 359.97438 * 18 16 15 20 20 C 1.37881 * 120.00021 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99770 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99908 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46963 * 90.00643 * 22 20 18 24 24 H 1.48496 * 109.47240 * 210.00338 * 22 20 18 25 25 H 1.48496 * 109.47668 * 330.00356 * 22 20 18 26 26 C 1.47423 * 125.65112 * 184.60601 * 13 11 10 27 27 S 1.70949 * 124.80514 * 135.00013 * 7 4 3 28 28 H 1.09002 * 109.46821 * 300.00039 * 1 2 3 29 29 H 1.09003 * 109.47073 * 59.99570 * 1 2 3 30 30 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46821 * 239.99961 * 2 1 3 32 32 H 1.09003 * 109.47073 * 120.00430 * 2 1 3 33 33 H 1.09001 * 109.47072 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.47607 * 300.00230 * 6 4 3 35 35 H 1.09001 * 109.47016 * 59.99968 * 6 4 3 36 36 H 1.08007 * 122.90329 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.88250 * 300.43859 * 14 13 11 38 38 H 1.08996 * 109.88402 * 61.45044 * 14 13 11 39 39 H 1.08993 * 110.71722 * 140.55719 * 15 14 13 40 40 H 1.08996 * 110.71910 * 263.82478 * 15 14 13 41 41 H 0.96701 * 114.00527 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99984 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.36670 * 274.74476 * 26 13 11 44 44 H 1.09008 * 110.36692 * 37.06778 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9388 1.5003 -1.4432 7 6 3.8349 2.7261 0.7098 8 7 3.2800 3.8819 0.5326 9 6 3.7485 4.8875 1.2281 10 6 4.7736 4.5620 2.0549 11 6 5.4900 5.4797 2.9471 12 8 5.2453 6.6714 2.9181 13 7 6.4193 5.0031 3.7989 14 6 6.8849 3.6102 3.8674 15 6 7.9268 3.5307 5.0032 16 6 7.5754 4.7589 5.8837 17 8 6.5006 4.4587 6.7763 18 6 8.7842 5.2433 6.6422 19 1 9.7322 4.7389 6.5264 20 6 8.6799 6.3304 7.4839 21 7 7.5254 6.9442 7.6253 22 14 10.1781 6.9303 8.4246 23 1 10.8998 7.9425 7.6123 24 1 9.7454 7.5416 9.7068 25 1 11.0801 5.7839 8.7024 26 6 7.1420 5.7935 4.8120 27 16 5.0914 2.8394 1.8635 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0254 1.5859 -1.4437 34 1 3.6466 0.5846 -1.9571 35 1 3.5061 2.3589 -1.9568 36 1 3.3529 5.8895 1.1504 37 1 6.0462 2.9494 4.0869 38 1 7.3430 3.3255 2.9203 39 1 7.8117 2.6057 5.5680 40 1 8.9379 3.6177 4.6057 41 1 6.2458 5.1962 7.3474 42 1 7.4519 7.7087 8.2177 43 1 8.0152 6.2717 4.3681 44 1 6.4817 6.5409 5.2520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -83.651325 kcal Electronic energy + Delta-G solvation = -27348.010028 eV Core-core repulsion = 23392.507057 eV Total energy + Delta-G solvation = -3955.502970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.11042 -39.34754 -38.33743 -37.14740 -34.41907 -33.27925 -32.21944 -30.87369 -30.42442 -29.57877 -27.97627 -26.40943 -25.13257 -23.35438 -23.06449 -22.54857 -20.89993 -19.74361 -18.79179 -18.24166 -17.29134 -16.89659 -16.19219 -16.04242 -15.96360 -15.44176 -15.22892 -14.83427 -14.45326 -14.30013 -14.06263 -13.57572 -13.42159 -13.28761 -13.11669 -12.98482 -12.78651 -12.38024 -12.21799 -12.09173 -11.89116 -11.71553 -11.60316 -11.46943 -11.24660 -11.10486 -10.92463 -10.77473 -10.55833 -10.28254 -10.11882 -9.73032 -9.64937 -9.45524 -9.34489 -8.99257 -8.75353 -8.47779 -7.92387 -6.35930 -4.45838 0.25531 1.11201 1.56338 2.54291 3.16317 3.24624 3.26554 3.34681 3.47102 3.50529 3.90401 4.20712 4.43333 4.66118 4.80153 4.81495 4.90445 4.92841 5.01144 5.02910 5.20298 5.22262 5.32439 5.41956 5.45024 5.47289 5.59388 5.66959 5.82090 5.85563 5.87471 6.03217 6.12525 6.36381 6.59189 6.72282 6.80508 6.84457 7.13932 7.23117 7.64939 7.67212 7.89812 7.99444 8.48424 8.58107 9.24054 9.37966 10.71500 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002529 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.347374 B =11070.680390 C =11348.630338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.169 3.831 5 H 0.081 0.919 6 C -0.167 4.167 7 C 0.019 3.981 8 N -0.451 5.451 9 C 0.105 3.895 10 C -0.268 4.268 11 C 0.597 3.403 12 O -0.535 6.535 13 N -0.600 5.600 14 C 0.092 3.908 15 C -0.112 4.112 16 C 0.250 3.750 17 O -0.583 6.583 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.094 3.906 27 S 0.196 5.804 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.387 0.613 42 H 0.272 0.728 43 H 0.066 0.934 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 -14.511 -14.461 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.281 6.281 4 C 0.108 3.892 5 H 0.098 0.902 6 C -0.226 4.226 7 C -0.256 4.256 8 N -0.165 5.165 9 C -0.053 4.053 10 C -0.392 4.392 11 C 0.383 3.617 12 O -0.414 6.414 13 N -0.332 5.332 14 C -0.033 4.033 15 C -0.150 4.150 16 C 0.209 3.791 17 O -0.394 6.394 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.027 4.027 27 S 0.454 5.546 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.205 0.795 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.240 0.760 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.709 -14.847 -14.656 21.914 hybrid contribution 0.458 1.632 0.683 1.828 sum -6.251 -13.215 -13.973 20.222 Atomic orbital electron populations 1.21729 0.93442 1.02205 1.03418 1.22596 0.95989 0.83667 1.00138 1.88108 1.18863 1.26255 1.94923 1.20391 0.82991 0.90661 0.95159 0.90163 1.22256 1.01715 1.03642 0.94984 1.27464 0.99676 0.97630 1.00813 1.66142 1.28141 0.98089 1.24175 1.22184 0.92441 0.99397 0.91268 1.26023 1.06987 0.97083 1.09107 1.16340 0.79305 0.86517 0.79530 1.90823 1.66331 1.14816 1.69454 1.48616 1.38241 1.11162 1.35182 1.22168 0.98317 0.83250 0.99555 1.22611 0.96975 1.00855 0.94583 1.19630 0.85989 0.87691 0.85754 1.86063 1.54451 1.44195 1.54670 1.21472 0.95721 1.14221 1.26269 0.91319 1.25093 0.96692 0.95527 0.95933 1.69558 1.24098 1.21823 1.37867 0.86359 0.82188 0.78960 0.79162 1.20364 1.20942 1.19642 1.23455 0.95182 0.96460 0.87583 1.84207 1.32025 1.04260 1.34105 0.91713 0.91726 0.91044 0.93156 0.93168 0.91155 0.91339 0.90653 0.79543 0.91560 0.92109 0.90267 0.90051 0.76023 0.91752 0.91623 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.41 6.47 37.16 0.24 0.65 16 3 O -0.36 -4.13 9.96 -35.23 -0.35 -4.48 16 4 C 0.17 1.71 3.23 -27.88 -0.09 1.62 16 5 H 0.08 0.61 7.78 -51.93 -0.40 0.21 16 6 C -0.17 -1.38 9.51 37.16 0.35 -1.03 16 7 C 0.02 0.25 6.28 -13.29 -0.08 0.17 16 8 N -0.45 -6.89 10.49 -11.50 -0.12 -7.01 16 9 C 0.10 1.67 11.09 -18.85 -0.21 1.46 16 10 C -0.27 -4.50 6.40 -37.10 -0.24 -4.74 16 11 C 0.60 12.24 7.81 -12.86 -0.10 12.14 16 12 O -0.53 -12.59 17.17 5.20 0.09 -12.50 16 13 N -0.60 -12.28 3.32 -171.91 -0.57 -12.85 16 14 C 0.09 1.56 5.20 -3.06 -0.02 1.55 16 15 C -0.11 -2.11 6.12 -24.90 -0.15 -2.26 16 16 C 0.25 5.84 0.89 -89.50 -0.08 5.76 16 17 O -0.58 -14.56 13.19 -35.23 -0.46 -15.02 16 18 C -0.54 -13.47 8.25 -34.44 -0.28 -13.76 16 19 H 0.07 1.67 7.76 -52.48 -0.41 1.26 16 20 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 21 N -0.89 -23.29 10.72 55.43 0.59 -22.70 16 22 Si 0.91 19.83 29.54 -169.99 -5.02 14.80 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 26 C 0.09 2.20 5.63 -2.41 -0.01 2.19 16 27 S 0.20 2.53 18.68 -107.50 -2.01 0.52 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 32 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.19 2.80 8.06 -52.48 -0.42 2.38 16 37 H 0.07 1.08 6.71 -51.92 -0.35 0.73 16 38 H 0.06 0.87 7.19 -51.93 -0.37 0.50 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 41 H 0.39 10.06 6.93 45.56 0.32 10.38 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 43 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 44 H 0.09 2.25 7.69 -51.92 -0.40 1.85 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -30.23 376.01 -8.35 -38.58 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.78 Total: 10.24 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.38 Total: 4.76 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.10 Total: -42.56 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.73 Total: -32.01 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.01 Total: 0.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.23 -8.35 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.070 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds