Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42892 * 109.47421 * 2 1 4 4 C 1.42905 * 114.00022 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47158 * 329.99778 * 4 3 2 6 6 C 1.52996 * 109.47207 * 89.99723 * 4 3 2 7 7 C 1.50702 * 109.47007 * 209.99908 * 4 3 2 8 8 N 1.29425 * 124.80506 * 314.97478 * 7 4 3 9 9 C 1.30942 * 117.36409 * 180.02562 * 8 7 4 10 10 C 1.35662 * 114.19353 * 359.97438 * 9 8 7 11 11 C 1.46675 * 126.13324 * 179.97438 * 10 9 8 12 12 O 1.21692 * 119.99839 * 354.53337 * 11 10 9 13 13 N 1.34770 * 120.00269 * 174.53281 * 11 10 9 14 14 C 1.47024 * 125.64680 * 4.91276 * 13 11 10 15 15 C 1.54331 * 107.27024 * 181.02372 * 14 13 11 16 16 C 1.55152 * 102.94202 * 22.19430 * 15 14 13 17 17 O 1.42898 * 111.00902 * 82.57298 * 16 15 14 18 18 C 1.50702 * 111.00199 * 206.38545 * 16 15 14 19 19 H 1.08003 * 119.99997 * 359.97438 * 18 16 15 20 20 C 1.37881 * 120.00021 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99770 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99908 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46963 * 90.00643 * 22 20 18 24 24 H 1.48496 * 109.47240 * 210.00338 * 22 20 18 25 25 H 1.48496 * 109.47668 * 330.00356 * 22 20 18 26 26 C 1.47423 * 125.65112 * 184.60601 * 13 11 10 27 27 S 1.70949 * 124.80514 * 135.00013 * 7 4 3 28 28 H 1.09002 * 109.46821 * 300.00039 * 1 2 3 29 29 H 1.09003 * 109.47073 * 59.99570 * 1 2 3 30 30 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46821 * 239.99961 * 2 1 3 32 32 H 1.09003 * 109.47073 * 120.00430 * 2 1 3 33 33 H 1.09001 * 109.47072 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.47607 * 300.00230 * 6 4 3 35 35 H 1.09001 * 109.47016 * 59.99968 * 6 4 3 36 36 H 1.08007 * 122.90329 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.88250 * 300.43859 * 14 13 11 38 38 H 1.08996 * 109.88402 * 61.45044 * 14 13 11 39 39 H 1.08993 * 110.71722 * 140.55719 * 15 14 13 40 40 H 1.08996 * 110.71910 * 263.82478 * 15 14 13 41 41 H 0.96701 * 114.00527 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99984 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.36670 * 274.74476 * 26 13 11 44 44 H 1.09008 * 110.36692 * 37.06778 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.8636 0.6013 0.5130 6 6 3.9388 1.5003 -1.4432 7 6 3.8349 2.7261 0.7098 8 7 3.2800 3.8819 0.5326 9 6 3.7485 4.8875 1.2281 10 6 4.7736 4.5620 2.0549 11 6 5.4900 5.4797 2.9471 12 8 5.2453 6.6714 2.9181 13 7 6.4193 5.0031 3.7989 14 6 6.8849 3.6102 3.8674 15 6 7.9268 3.5307 5.0032 16 6 7.5754 4.7589 5.8837 17 8 6.5006 4.4587 6.7763 18 6 8.7842 5.2433 6.6422 19 1 9.7322 4.7389 6.5264 20 6 8.6799 6.3304 7.4839 21 7 7.5254 6.9442 7.6253 22 14 10.1781 6.9303 8.4246 23 1 10.8998 7.9425 7.6123 24 1 9.7454 7.5416 9.7068 25 1 11.0801 5.7839 8.7024 26 6 7.1420 5.7935 4.8120 27 16 5.0914 2.8394 1.8635 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0254 1.5859 -1.4437 34 1 3.6466 0.5846 -1.9571 35 1 3.5061 2.3589 -1.9568 36 1 3.3529 5.8895 1.1504 37 1 6.0462 2.9494 4.0869 38 1 7.3430 3.3255 2.9203 39 1 7.8117 2.6057 5.5680 40 1 8.9379 3.6177 4.6057 41 1 6.2458 5.1962 7.3474 42 1 7.4519 7.7087 8.2177 43 1 8.0152 6.2717 4.3681 44 1 6.4817 6.5409 5.2520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -105.698938 kcal Electronic energy + Delta-G solvation = -27348.966084 eV Core-core repulsion = 23392.507057 eV Total energy + Delta-G solvation = -3956.459027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42355 -40.73056 -39.24850 -38.76863 -36.20412 -34.16767 -34.05406 -32.24179 -31.41869 -30.70361 -29.63406 -27.68176 -26.71369 -24.60907 -23.93135 -23.53132 -22.19224 -21.50783 -19.91153 -19.60804 -19.11277 -18.01981 -17.41974 -17.21742 -17.00554 -16.97141 -16.60769 -16.20490 -16.02404 -15.46345 -15.30019 -14.91640 -14.82847 -14.73950 -14.23675 -14.10424 -13.81311 -13.53197 -13.45113 -13.36566 -12.96754 -12.91338 -12.80343 -12.74111 -12.52501 -12.36104 -12.31201 -12.26628 -12.17915 -11.89653 -11.39866 -11.31865 -10.86939 -10.67573 -10.65007 -10.45737 -10.37246 -10.11470 -9.56619 -8.27306 -6.44031 -0.92311 0.00289 0.42124 1.28891 1.42735 1.45371 1.54776 1.84760 2.03398 2.38085 2.71710 2.94617 2.99118 3.43772 3.68156 3.69781 4.03045 4.04466 4.05081 4.08302 4.14273 4.23952 4.26328 4.36119 4.46695 4.53083 4.63766 4.66671 4.80301 4.88269 4.94635 4.98006 5.00535 5.05364 5.17886 5.24780 5.29989 5.32883 5.41513 5.74502 6.00512 6.18192 6.38927 6.56678 6.64564 6.89481 7.28334 7.36730 8.78526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002529 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.347374 B =11070.680390 C =11348.630338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.393 6.393 4 C 0.162 3.838 5 H 0.113 0.887 6 C -0.163 4.163 7 C 0.029 3.971 8 N -0.477 5.477 9 C 0.113 3.887 10 C -0.310 4.310 11 C 0.594 3.406 12 O -0.581 6.581 13 N -0.606 5.606 14 C 0.091 3.909 15 C -0.106 4.106 16 C 0.233 3.767 17 O -0.589 6.589 18 C -0.553 4.553 19 H 0.075 0.925 20 C 0.024 3.976 21 N -0.919 5.919 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.106 3.894 27 S 0.265 5.735 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.183 0.817 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.378 0.622 42 H 0.271 0.729 43 H 0.054 0.946 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -18.022 -15.748 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.101 3.899 5 H 0.131 0.869 6 C -0.222 4.222 7 C -0.245 4.245 8 N -0.192 5.192 9 C -0.046 4.046 10 C -0.434 4.434 11 C 0.382 3.618 12 O -0.464 6.464 13 N -0.337 5.337 14 C -0.032 4.032 15 C -0.144 4.144 16 C 0.193 3.807 17 O -0.399 6.399 18 C -0.591 4.591 19 H 0.093 0.907 20 C -0.176 4.176 21 N -0.559 5.559 22 Si 0.792 3.208 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.017 4.017 27 S 0.525 5.475 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.200 0.800 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.229 0.771 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.786 -18.426 -15.953 25.050 hybrid contribution 0.095 2.626 1.011 2.816 sum -5.691 -15.800 -14.942 22.478 Atomic orbital electron populations 1.21769 0.93424 1.03371 1.02302 1.22839 0.96104 0.82352 1.01752 1.88078 1.19435 1.28578 1.95140 1.20754 0.83065 0.89884 0.96228 0.86932 1.22256 1.02316 1.04003 0.93657 1.28234 0.98602 0.98120 0.99583 1.66236 1.29205 0.98712 1.25022 1.22234 0.91889 0.99779 0.90694 1.25643 1.08147 0.99572 1.10045 1.16797 0.78895 0.86583 0.79486 1.90777 1.67622 1.17087 1.70925 1.48630 1.38275 1.12241 1.34528 1.22365 0.98566 0.81434 1.00811 1.22628 0.98361 0.99183 0.94180 1.19897 0.85079 0.90043 0.85721 1.86052 1.55170 1.43786 1.54863 1.21823 0.96536 1.14319 1.26394 0.90687 1.25853 0.98993 0.95831 0.96939 1.69679 1.25737 1.22098 1.38410 0.85422 0.79248 0.78508 0.77665 1.20356 1.21159 1.18683 1.23054 0.94019 0.96120 0.88498 1.83723 1.30979 1.00044 1.32795 0.93256 0.92422 0.88742 0.90989 0.91959 0.89896 0.88880 0.92758 0.79983 0.90279 0.88521 0.88778 0.88366 0.77105 0.91992 0.92785 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.57 6.47 71.98 0.47 1.03 16 3 O -0.39 -7.98 9.96 -148.98 -1.48 -9.46 16 4 C 0.16 2.71 3.23 29.85 0.10 2.81 16 5 H 0.11 1.16 7.78 -2.39 -0.02 1.14 16 6 C -0.16 -2.16 9.51 71.98 0.68 -1.47 16 7 C 0.03 0.68 6.28 88.46 0.56 1.24 16 8 N -0.48 -14.14 10.49 -190.30 -2.00 -16.14 16 9 C 0.11 3.63 11.09 84.23 0.93 4.56 16 10 C -0.31 -10.29 6.40 23.88 0.15 -10.14 16 11 C 0.59 24.94 7.81 86.45 0.68 25.61 16 12 O -0.58 -28.91 17.17 -4.32 -0.07 -28.99 16 13 N -0.61 -24.90 3.32 -816.02 -2.71 -27.61 16 14 C 0.09 2.90 5.20 86.73 0.45 3.35 16 15 C -0.11 -3.74 6.12 31.78 0.19 -3.54 16 16 C 0.23 10.91 0.89 -10.07 -0.01 10.90 16 17 O -0.59 -29.84 13.19 -148.98 -1.97 -31.81 16 18 C -0.55 -27.62 8.25 25.60 0.21 -27.41 16 19 H 0.07 3.57 7.76 -2.91 -0.02 3.54 16 20 C 0.02 1.24 5.29 84.66 0.45 1.69 16 21 N -0.92 -49.43 10.72 21.45 0.23 -49.20 16 22 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C 0.11 5.10 5.63 86.93 0.49 5.59 16 27 S 0.27 6.06 18.68 -56.49 -1.06 5.00 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.58 7.87 -2.39 -0.02 0.57 16 32 H 0.06 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.78 7.87 -2.39 -0.02 0.77 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.18 5.76 8.06 -2.91 -0.02 5.74 16 37 H 0.08 2.32 6.71 -2.38 -0.02 2.31 16 38 H 0.10 2.40 7.19 -2.39 -0.02 2.38 16 39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.10 3.13 8.01 -2.39 -0.02 3.11 16 41 H 0.38 20.41 6.93 -74.06 -0.51 19.89 16 42 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.05 2.67 8.04 -2.39 -0.02 2.65 16 44 H 0.04 2.47 7.69 -2.38 -0.02 2.45 16 Total: -1.00 -68.70 376.01 -0.43 -69.13 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.51 Total: 33.12 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.09 Total: 13.13 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.48 Total: -92.95 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -3.52 Total: -70.26 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.06 Total: 5.00 kcal Total: -68.70 -0.43 -69.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.572 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds