Wall clock time and date at job start Sat Apr 11 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.46757 * 2 1 4 4 C 1.42899 * 113.99693 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47446 * 330.00384 * 4 3 2 6 6 C 1.53000 * 109.47012 * 90.00141 * 4 3 2 7 7 C 1.50706 * 109.47219 * 210.00098 * 4 3 2 8 8 N 1.29424 * 124.79862 * 315.04111 * 7 4 3 9 9 C 1.30944 * 117.35884 * 179.69426 * 8 7 4 10 10 C 1.35659 * 114.19223 * 0.48607 * 9 8 7 11 11 C 1.46682 * 126.13164 * 179.82470 * 10 9 8 12 12 O 1.21692 * 120.00252 * 5.48113 * 11 10 9 13 13 N 1.34776 * 119.99955 * 185.48246 * 11 10 9 14 14 C 1.47022 * 125.65095 * 355.13806 * 13 11 10 15 15 C 1.54320 * 107.27420 * 178.89929 * 14 13 11 16 16 C 1.55164 * 102.94318 * 337.80525 * 15 14 13 17 17 O 1.42892 * 111.00414 * 277.43207 * 16 15 14 18 18 C 1.50694 * 111.00452 * 153.61571 * 16 15 14 19 19 H 1.07999 * 120.00185 * 3.18021 * 18 16 15 20 20 C 1.37880 * 120.00028 * 183.18563 * 18 16 15 21 21 N 1.31517 * 119.99720 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00132 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47261 * 59.99663 * 22 20 18 24 24 H 1.48501 * 109.47259 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46991 * 299.99817 * 22 20 18 26 26 C 1.47428 * 125.64825 * 175.09001 * 13 11 10 27 27 S 1.70943 * 124.80428 * 135.00358 * 7 4 3 28 28 H 1.09005 * 109.46712 * 299.99802 * 1 2 3 29 29 H 1.08996 * 109.47068 * 59.99595 * 1 2 3 30 30 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46886 * 240.00540 * 2 1 3 32 32 H 1.08992 * 109.47329 * 119.99973 * 2 1 3 33 33 H 1.08997 * 109.47341 * 59.99834 * 6 4 3 34 34 H 1.08997 * 109.47131 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.46964 * 300.00179 * 6 4 3 36 36 H 1.08002 * 122.90337 * 180.30690 * 9 8 7 37 37 H 1.08998 * 109.87969 * 59.47666 * 14 13 11 38 38 H 1.09000 * 109.88351 * 298.31941 * 14 13 11 39 39 H 1.09007 * 110.71847 * 219.44610 * 15 14 13 40 40 H 1.08997 * 110.87552 * 96.24287 * 15 14 13 41 41 H 0.96704 * 113.99915 * 179.97438 * 17 16 15 42 42 H 0.97000 * 119.99740 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.36874 * 85.33218 * 26 13 11 44 44 H 1.08996 * 110.36525 * 323.00899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5146 6 6 3.9398 1.5003 -1.4417 7 6 3.8342 2.7266 0.7110 8 7 3.2785 3.8820 0.5338 9 6 3.7421 4.8865 1.2342 10 6 4.7707 4.5626 2.0572 11 6 5.4852 5.4803 2.9511 12 8 5.1043 6.6295 3.0743 13 7 6.5635 5.0507 3.6360 14 6 7.0697 3.6706 3.6597 15 6 8.3308 3.6602 4.5491 16 6 8.7894 5.1422 4.5191 17 8 9.5548 5.4178 3.3443 18 6 9.5672 5.4922 5.7615 19 1 9.7793 4.7313 6.4980 20 6 10.0079 6.7838 5.9579 21 7 9.7499 7.7102 5.0608 22 14 10.9726 7.2175 7.4976 23 1 12.2133 6.4031 7.5502 24 1 11.3282 8.6590 7.4693 25 1 10.1438 6.9349 8.6970 26 6 7.4316 5.8872 4.4847 27 16 5.0897 2.8402 1.8655 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5075 2.3587 -1.9559 34 1 5.0263 1.5868 -1.4413 35 1 3.6481 0.5843 -1.9555 36 1 3.3421 5.8871 1.1608 37 1 7.3260 3.3523 2.6492 38 1 6.3145 3.0060 4.0795 39 1 9.0966 3.0108 4.1247 40 1 8.0865 3.3526 5.5658 41 1 9.8631 6.3322 3.2813 42 1 10.0603 8.6187 5.1988 43 1 7.0169 5.9666 5.4895 44 1 7.5529 6.8767 4.0442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:55 Heat of formation + Delta-G solvation = -83.774079 kcal Electronic energy + Delta-G solvation = -27338.285353 eV Core-core repulsion = 23382.777060 eV Total energy + Delta-G solvation = -3955.508293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10908 -39.34756 -38.34367 -37.15243 -34.41407 -33.28053 -32.25709 -30.87772 -30.42381 -29.57406 -27.95895 -26.40463 -25.13264 -23.36136 -23.07100 -22.54917 -20.89900 -19.74865 -18.79365 -18.23794 -17.27595 -16.88731 -16.23466 -16.05046 -15.95181 -15.40527 -15.20192 -14.86471 -14.47406 -14.32175 -14.03458 -13.58013 -13.41047 -13.28728 -13.12265 -12.98245 -12.78649 -12.38059 -12.22282 -12.08721 -11.88899 -11.72826 -11.62652 -11.46287 -11.25026 -11.08178 -10.93601 -10.77908 -10.57403 -10.29036 -10.12776 -9.71378 -9.64216 -9.42839 -9.36745 -8.98291 -8.75452 -8.48466 -7.92216 -6.35214 -4.45661 0.25991 1.10909 1.56581 2.54384 3.17797 3.24560 3.25489 3.37544 3.41884 3.53290 3.90611 4.20975 4.43167 4.65322 4.80390 4.81755 4.89428 4.93106 5.00596 5.02001 5.20717 5.22117 5.32798 5.42809 5.45385 5.47460 5.57613 5.66226 5.80453 5.86210 5.87356 6.03629 6.12766 6.36646 6.60017 6.73590 6.81514 6.83635 7.15659 7.24180 7.65053 7.67018 7.90185 8.00354 8.49105 8.58488 9.23478 9.33467 10.71896 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.002495 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.151687 B =11220.916668 C =11531.841355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.170 3.830 5 H 0.080 0.920 6 C -0.168 4.168 7 C 0.019 3.981 8 N -0.451 5.451 9 C 0.104 3.896 10 C -0.267 4.267 11 C 0.597 3.403 12 O -0.534 6.534 13 N -0.601 5.601 14 C 0.092 3.908 15 C -0.112 4.112 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.540 4.540 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.096 3.904 27 S 0.196 5.804 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.188 0.812 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.385 0.615 42 H 0.272 0.728 43 H 0.065 0.935 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -16.067 -9.095 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.108 3.892 5 H 0.098 0.902 6 C -0.227 4.227 7 C -0.256 4.256 8 N -0.165 5.165 9 C -0.053 4.053 10 C -0.392 4.392 11 C 0.383 3.617 12 O -0.414 6.414 13 N -0.333 5.333 14 C -0.033 4.033 15 C -0.150 4.150 16 C 0.209 3.791 17 O -0.393 6.393 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.532 5.532 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.025 4.025 27 S 0.454 5.546 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.205 0.795 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.237 0.763 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.541 -16.430 -9.169 22.073 hybrid contribution 0.347 1.580 0.832 1.819 sum -11.194 -14.850 -8.337 20.380 Atomic orbital electron populations 1.21729 0.93459 1.02191 1.03404 1.22593 0.95964 0.83691 1.00142 1.88107 1.18910 1.26222 1.94933 1.20390 0.82920 0.90634 0.95225 0.90177 1.22262 1.01822 1.03635 0.94946 1.27455 0.99298 0.97646 1.01194 1.66143 1.28169 0.98120 1.24102 1.22183 0.92365 0.99432 0.91319 1.26029 1.06559 0.97249 1.09332 1.16338 0.79767 0.86047 0.79542 1.90824 1.66537 1.18010 1.66007 1.48631 1.26749 1.11277 1.46597 1.22160 0.97252 0.83279 1.00602 1.22607 0.94223 0.99538 0.98666 1.19603 0.86382 0.88056 0.85033 1.86075 1.73105 1.35698 1.44429 1.21415 1.35912 0.95353 1.05164 0.91385 1.25096 0.95030 0.96056 0.97063 1.69634 1.45479 1.03093 1.34969 0.86427 0.80254 0.77452 0.82589 1.19949 1.21040 1.19966 1.23383 0.90443 0.96124 0.92545 1.84201 1.31264 1.04244 1.34915 0.91758 0.91703 0.91054 0.93124 0.93213 0.90644 0.91068 0.91336 0.79541 0.91520 0.92126 0.90304 0.90020 0.76333 0.91744 0.91668 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.40 6.47 37.16 0.24 0.64 16 3 O -0.36 -4.07 9.96 -35.23 -0.35 -4.42 16 4 C 0.17 1.71 3.23 -27.88 -0.09 1.62 16 5 H 0.08 0.61 7.78 -51.93 -0.40 0.20 16 6 C -0.17 -1.44 9.51 37.16 0.35 -1.08 16 7 C 0.02 0.25 6.28 -13.29 -0.08 0.16 16 8 N -0.45 -6.90 10.49 -11.50 -0.12 -7.02 16 9 C 0.10 1.67 11.09 -18.85 -0.21 1.46 16 10 C -0.27 -4.50 6.40 -37.10 -0.24 -4.74 16 11 C 0.60 12.26 7.81 -12.85 -0.10 12.16 16 12 O -0.53 -12.62 17.17 5.20 0.09 -12.53 16 13 N -0.60 -12.31 3.33 -172.06 -0.57 -12.88 16 14 C 0.09 1.56 5.20 -3.07 -0.02 1.55 16 15 C -0.11 -2.11 6.13 -24.89 -0.15 -2.26 16 16 C 0.25 5.82 0.89 -89.62 -0.08 5.74 16 17 O -0.58 -14.42 13.19 -35.23 -0.46 -14.88 16 18 C -0.54 -13.51 8.26 -34.44 -0.28 -13.79 16 19 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 20 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 21 N -0.89 -23.22 10.68 55.43 0.59 -22.63 16 22 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 C 0.10 2.25 5.49 -2.52 -0.01 2.23 16 27 S 0.20 2.53 18.69 -107.50 -2.01 0.52 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 32 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 36 H 0.19 2.81 8.06 -52.49 -0.42 2.38 16 37 H 0.07 1.07 6.72 -51.93 -0.35 0.72 16 38 H 0.06 0.88 7.19 -51.93 -0.37 0.51 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 41 H 0.39 9.88 7.18 45.56 0.33 10.20 16 42 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 44 H 0.09 2.31 7.53 -51.93 -0.39 1.92 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -30.13 375.93 -8.34 -38.47 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.76 Total: 10.15 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.38 Total: 4.76 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.10 Total: -42.53 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.73 Total: -31.83 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.01 Total: 0.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.13 -8.34 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.301 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds