Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.46757 * 2 1 4 4 C 1.42899 * 113.99693 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47446 * 330.00384 * 4 3 2 6 6 C 1.53000 * 109.47012 * 90.00141 * 4 3 2 7 7 C 1.50706 * 109.47219 * 210.00098 * 4 3 2 8 8 N 1.29424 * 124.79862 * 315.04111 * 7 4 3 9 9 C 1.30944 * 117.35884 * 179.69426 * 8 7 4 10 10 C 1.35659 * 114.19223 * 0.48607 * 9 8 7 11 11 C 1.46682 * 126.13164 * 179.82470 * 10 9 8 12 12 O 1.21692 * 120.00252 * 5.48113 * 11 10 9 13 13 N 1.34776 * 119.99955 * 185.48246 * 11 10 9 14 14 C 1.47022 * 125.65095 * 355.13806 * 13 11 10 15 15 C 1.54320 * 107.27420 * 178.89929 * 14 13 11 16 16 C 1.55164 * 102.94318 * 337.80525 * 15 14 13 17 17 O 1.42892 * 111.00414 * 277.43207 * 16 15 14 18 18 C 1.50694 * 111.00452 * 153.61571 * 16 15 14 19 19 H 1.07999 * 120.00185 * 3.18021 * 18 16 15 20 20 C 1.37880 * 120.00028 * 183.18563 * 18 16 15 21 21 N 1.31517 * 119.99720 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00132 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47261 * 59.99663 * 22 20 18 24 24 H 1.48501 * 109.47259 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46991 * 299.99817 * 22 20 18 26 26 C 1.47428 * 125.64825 * 175.09001 * 13 11 10 27 27 S 1.70943 * 124.80428 * 135.00358 * 7 4 3 28 28 H 1.09005 * 109.46712 * 299.99802 * 1 2 3 29 29 H 1.08996 * 109.47068 * 59.99595 * 1 2 3 30 30 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46886 * 240.00540 * 2 1 3 32 32 H 1.08992 * 109.47329 * 119.99973 * 2 1 3 33 33 H 1.08997 * 109.47341 * 59.99834 * 6 4 3 34 34 H 1.08997 * 109.47131 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.46964 * 300.00179 * 6 4 3 36 36 H 1.08002 * 122.90337 * 180.30690 * 9 8 7 37 37 H 1.08998 * 109.87969 * 59.47666 * 14 13 11 38 38 H 1.09000 * 109.88351 * 298.31941 * 14 13 11 39 39 H 1.09007 * 110.71847 * 219.44610 * 15 14 13 40 40 H 1.08997 * 110.87552 * 96.24287 * 15 14 13 41 41 H 0.96704 * 113.99915 * 179.97438 * 17 16 15 42 42 H 0.97000 * 119.99740 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.36874 * 85.33218 * 26 13 11 44 44 H 1.08996 * 110.36525 * 323.00899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5146 6 6 3.9398 1.5003 -1.4417 7 6 3.8342 2.7266 0.7110 8 7 3.2785 3.8820 0.5338 9 6 3.7421 4.8865 1.2342 10 6 4.7707 4.5626 2.0572 11 6 5.4852 5.4803 2.9511 12 8 5.1043 6.6295 3.0743 13 7 6.5635 5.0507 3.6360 14 6 7.0697 3.6706 3.6597 15 6 8.3308 3.6602 4.5491 16 6 8.7894 5.1422 4.5191 17 8 9.5548 5.4178 3.3443 18 6 9.5672 5.4922 5.7615 19 1 9.7793 4.7313 6.4980 20 6 10.0079 6.7838 5.9579 21 7 9.7499 7.7102 5.0608 22 14 10.9726 7.2175 7.4976 23 1 12.2133 6.4031 7.5502 24 1 11.3282 8.6590 7.4693 25 1 10.1438 6.9349 8.6970 26 6 7.4316 5.8872 4.4847 27 16 5.0897 2.8402 1.8655 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5075 2.3587 -1.9559 34 1 5.0263 1.5868 -1.4413 35 1 3.6481 0.5843 -1.9555 36 1 3.3421 5.8871 1.1608 37 1 7.3260 3.3523 2.6492 38 1 6.3145 3.0060 4.0795 39 1 9.0966 3.0108 4.1247 40 1 8.0865 3.3526 5.5658 41 1 9.8631 6.3322 3.2813 42 1 10.0603 8.6187 5.1988 43 1 7.0169 5.9666 5.4895 44 1 7.5529 6.8767 4.0442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -105.766749 kcal Electronic energy + Delta-G solvation = -27339.239027 eV Core-core repulsion = 23382.777060 eV Total energy + Delta-G solvation = -3956.461967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42344 -40.73237 -39.24989 -38.77143 -36.19397 -34.20123 -34.05279 -32.23471 -31.41548 -30.70357 -29.61909 -27.68294 -26.71638 -24.61091 -23.93019 -23.53083 -22.19230 -21.51128 -19.91390 -19.60275 -19.09348 -18.01245 -17.44748 -17.24705 -16.96475 -16.94351 -16.60837 -16.17831 -16.05115 -15.48671 -15.30162 -14.90391 -14.81651 -14.74077 -14.23856 -14.11088 -13.80358 -13.55795 -13.44275 -13.36926 -12.95568 -12.90894 -12.79269 -12.74675 -12.52370 -12.36949 -12.31510 -12.29495 -12.17696 -11.89582 -11.39113 -11.29518 -10.86502 -10.67198 -10.62706 -10.51027 -10.34440 -10.12241 -9.56261 -8.26561 -6.43820 -0.92009 -0.00157 0.42270 1.28791 1.44373 1.45308 1.53159 1.85901 2.02968 2.38296 2.71429 2.94808 2.99672 3.43797 3.67923 3.69696 4.02742 4.03923 4.04602 4.08148 4.14349 4.24333 4.26813 4.36492 4.46742 4.53490 4.63206 4.67394 4.79828 4.88246 4.96534 4.98245 5.01222 5.05764 5.18017 5.24356 5.30378 5.33584 5.42403 5.74071 6.01192 6.18138 6.39385 6.56667 6.64813 6.89852 7.27243 7.34477 8.78671 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.002495 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.151687 B =11220.916668 C =11531.841355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.392 6.392 4 C 0.163 3.837 5 H 0.114 0.886 6 C -0.165 4.165 7 C 0.029 3.971 8 N -0.477 5.477 9 C 0.113 3.887 10 C -0.310 4.310 11 C 0.594 3.406 12 O -0.581 6.581 13 N -0.606 5.606 14 C 0.091 3.909 15 C -0.106 4.106 16 C 0.234 3.766 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.074 0.926 20 C 0.025 3.975 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.108 3.892 27 S 0.265 5.735 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.183 0.817 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.051 0.949 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 -19.891 -9.324 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.311 6.311 4 C 0.102 3.898 5 H 0.132 0.868 6 C -0.224 4.224 7 C -0.245 4.245 8 N -0.192 5.192 9 C -0.046 4.046 10 C -0.434 4.434 11 C 0.382 3.618 12 O -0.464 6.464 13 N -0.337 5.337 14 C -0.032 4.032 15 C -0.144 4.144 16 C 0.193 3.807 17 O -0.397 6.397 18 C -0.593 4.593 19 H 0.092 0.908 20 C -0.176 4.176 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.195 1.195 26 C -0.015 4.015 27 S 0.525 5.475 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.572 -20.325 -9.397 25.205 hybrid contribution 0.281 2.669 0.827 2.809 sum -11.291 -17.655 -8.569 22.642 Atomic orbital electron populations 1.21768 0.93378 1.03372 1.02320 1.22845 0.96123 0.82335 1.01770 1.88080 1.19336 1.28593 1.95132 1.20733 0.83101 0.89903 0.96090 0.86820 1.22266 1.02225 1.04004 0.93890 1.28224 0.98182 0.98136 1.00006 1.66238 1.29263 0.98743 1.24921 1.22233 0.91791 0.99811 0.90764 1.25646 1.07713 0.99751 1.10275 1.16798 0.79465 0.86096 0.79402 1.90778 1.67828 1.20280 1.67522 1.48645 1.26505 1.12310 1.46269 1.22360 0.97463 0.81840 1.01526 1.22625 0.95154 0.96353 1.00247 1.19852 0.85631 0.91102 0.84089 1.86064 1.73358 1.34974 1.45281 1.21771 1.35954 0.95612 1.05947 0.90769 1.25847 0.95982 0.96157 0.99574 1.69762 1.46325 1.03158 1.36431 0.85496 0.79122 0.76873 0.79484 1.19268 1.21405 1.19499 1.22971 0.91656 0.94957 0.91879 1.83715 1.30147 0.99994 1.33672 0.93127 0.92514 0.88743 0.91131 0.91807 0.92806 0.90122 0.88820 0.79986 0.90018 0.88734 0.88686 0.88484 0.77363 0.92054 0.93115 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.54 6.47 71.98 0.47 1.00 16 3 O -0.39 -7.79 9.96 -148.98 -1.48 -9.27 16 4 C 0.16 2.73 3.23 29.85 0.10 2.83 16 5 H 0.11 1.14 7.78 -2.39 -0.02 1.12 16 6 C -0.16 -2.30 9.51 71.98 0.68 -1.62 16 7 C 0.03 0.68 6.28 88.47 0.56 1.24 16 8 N -0.48 -14.15 10.49 -190.30 -2.00 -16.14 16 9 C 0.11 3.63 11.09 84.23 0.93 4.57 16 10 C -0.31 -10.30 6.40 23.88 0.15 -10.15 16 11 C 0.59 25.00 7.81 86.45 0.68 25.68 16 12 O -0.58 -29.01 17.17 -4.32 -0.07 -29.09 16 13 N -0.61 -24.97 3.33 -816.49 -2.72 -27.69 16 14 C 0.09 2.90 5.20 86.73 0.45 3.35 16 15 C -0.11 -3.75 6.13 31.78 0.19 -3.55 16 16 C 0.23 10.90 0.89 -10.15 -0.01 10.89 16 17 O -0.59 -29.43 13.19 -148.98 -1.96 -31.40 16 18 C -0.55 -27.72 8.26 25.60 0.21 -27.51 16 19 H 0.07 3.53 7.78 -2.91 -0.02 3.51 16 20 C 0.03 1.29 5.27 84.65 0.45 1.73 16 21 N -0.92 -49.26 10.68 21.45 0.23 -49.03 16 22 Si 0.96 40.78 29.54 68.60 2.03 42.80 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.11 5.23 5.49 86.86 0.48 5.71 16 27 S 0.27 6.06 18.69 -56.49 -1.06 5.01 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.56 7.87 -2.39 -0.02 0.54 16 32 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.85 7.87 -2.39 -0.02 0.83 16 36 H 0.18 5.77 8.06 -2.91 -0.02 5.74 16 37 H 0.08 2.36 6.72 -2.39 -0.02 2.35 16 38 H 0.09 2.38 7.19 -2.39 -0.02 2.37 16 39 H 0.09 3.05 8.14 -2.38 -0.02 3.04 16 40 H 0.10 3.12 8.02 -2.39 -0.02 3.10 16 41 H 0.38 20.02 7.18 -74.05 -0.53 19.49 16 42 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.05 2.54 8.03 -2.39 -0.02 2.52 16 44 H 0.05 2.64 7.53 -2.39 -0.02 2.62 16 Total: -1.00 -68.43 375.93 -0.47 -68.90 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.49 Total: 32.73 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 6.08 Total: 13.18 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -4.48 Total: -92.87 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -3.52 Total: -69.75 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.06 Total: 5.01 kcal Total: -68.43 -0.47 -68.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.868 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds