Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.46811 * 2 1 4 4 C 1.42897 * 113.99755 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47323 * 29.99753 * 4 3 2 6 6 C 1.53004 * 109.47173 * 270.00215 * 4 3 2 7 7 C 1.50699 * 109.47141 * 150.00077 * 4 3 2 8 8 N 1.29423 * 124.80384 * 44.95885 * 7 4 3 9 9 C 1.30950 * 117.36405 * 179.76926 * 8 7 4 10 10 C 1.35663 * 114.18598 * 0.48162 * 9 8 7 11 11 C 1.46684 * 126.12220 * 179.82434 * 10 9 8 12 12 O 1.21684 * 120.00358 * 354.56898 * 11 10 9 13 13 N 1.34785 * 119.99390 * 174.56641 * 11 10 9 14 14 C 1.47010 * 125.64857 * 4.95908 * 13 11 10 15 15 C 1.54328 * 107.27147 * 178.89564 * 14 13 11 16 16 C 1.55156 * 102.93936 * 337.80538 * 15 14 13 17 17 O 1.42893 * 111.00691 * 277.42770 * 16 15 14 18 18 C 1.50705 * 111.00128 * 153.61100 * 16 15 14 19 19 H 1.07993 * 120.00125 * 268.84314 * 18 16 15 20 20 C 1.37884 * 119.99563 * 88.84699 * 18 16 15 21 21 N 1.31515 * 119.99798 * 173.32288 * 20 18 16 22 22 Si 1.86802 * 120.00038 * 353.32864 * 20 18 16 23 23 H 1.48497 * 109.47420 * 85.88956 * 22 20 18 24 24 H 1.48497 * 109.46804 * 205.88970 * 22 20 18 25 25 H 1.48503 * 109.46869 * 325.88677 * 22 20 18 26 26 C 1.47427 * 125.64500 * 184.90447 * 13 11 10 27 27 S 1.70950 * 124.80383 * 225.00111 * 7 4 3 28 28 H 1.08993 * 109.47015 * 60.00070 * 1 2 3 29 29 H 1.08994 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47094 * 299.99659 * 1 2 3 31 31 H 1.09002 * 109.47094 * 240.00341 * 2 1 3 32 32 H 1.09003 * 109.47372 * 119.99537 * 2 1 3 33 33 H 1.08993 * 109.46942 * 60.00054 * 6 4 3 34 34 H 1.09007 * 109.46982 * 180.02562 * 6 4 3 35 35 H 1.09001 * 109.46511 * 299.99571 * 6 4 3 36 36 H 1.07997 * 122.90314 * 180.30192 * 9 8 7 37 37 H 1.09000 * 109.88564 * 59.47802 * 14 13 11 38 38 H 1.09005 * 109.88847 * 298.30985 * 14 13 11 39 39 H 1.09004 * 110.71870 * 219.44658 * 15 14 13 40 40 H 1.08995 * 110.87278 * 96.24200 * 15 14 13 41 41 H 0.96700 * 114.00084 * 174.86796 * 17 16 15 42 42 H 0.97002 * 120.00029 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.36056 * 85.33734 * 26 13 11 44 44 H 1.08997 * 110.36919 * 323.02016 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9398 1.5002 1.4417 7 6 3.8341 2.7266 -0.7110 8 7 3.2784 3.8820 -0.5338 9 6 3.7492 4.8888 -1.2263 10 6 4.7707 4.5626 -2.0572 11 6 5.4857 5.4805 -2.9505 12 8 5.1121 6.6330 -3.0643 13 7 6.5565 5.0474 -3.6450 14 6 7.0514 3.6636 -3.6817 15 6 8.2737 3.6389 -4.6235 16 6 8.0567 4.8955 -5.5073 17 8 7.1563 4.6171 -6.5813 18 6 9.3689 5.4220 -6.0291 19 1 9.9114 6.1698 -5.4698 20 6 9.8767 4.9490 -7.2205 21 7 10.9513 5.4993 -7.7420 22 14 9.0381 3.5266 -8.0941 23 1 7.9449 4.0484 -8.9530 24 1 10.0292 2.8091 -8.9356 25 1 8.4737 2.5914 -7.0880 26 6 7.4247 5.8827 -4.4946 27 16 5.0896 2.8402 -1.8656 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6482 0.5843 1.9555 34 1 5.0265 1.5868 1.4413 35 1 3.5076 2.3587 1.9558 36 1 3.3562 5.8915 -1.1451 37 1 6.2746 3.0020 -4.0652 38 1 7.3481 3.3492 -2.6810 39 1 8.2734 2.7346 -5.2321 40 1 9.2017 3.7209 -4.0576 41 1 6.9286 5.3911 -7.1144 42 1 11.3083 5.1668 -8.5804 43 1 8.2001 6.3577 -3.8934 44 1 6.8339 6.6354 -5.0166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -76.833730 kcal Electronic energy + Delta-G solvation = -27365.912169 eV Core-core repulsion = 23410.704832 eV Total energy + Delta-G solvation = -3955.207337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28019 -39.60947 -38.46179 -37.52507 -34.89534 -33.37021 -32.45634 -31.04086 -30.57039 -29.73858 -28.46656 -26.55539 -25.25432 -23.40169 -23.06192 -22.64266 -21.16467 -19.92950 -18.94282 -18.50449 -17.58605 -17.04129 -16.39798 -16.15552 -16.07412 -15.67378 -15.27402 -15.04320 -14.73828 -14.45825 -14.23971 -13.80102 -13.62807 -13.50000 -13.41083 -12.90161 -12.81575 -12.57946 -12.40881 -12.19416 -12.15484 -11.99700 -11.78176 -11.64255 -11.51109 -11.31876 -11.21322 -10.60644 -10.51921 -10.30109 -10.20052 -9.90252 -9.66515 -9.56965 -9.30465 -9.13997 -8.78549 -8.62918 -8.24589 -6.28063 -4.40895 0.11231 0.97903 1.43417 2.39342 3.13205 3.24317 3.36646 3.37827 3.44864 3.58162 3.79243 4.35486 4.39430 4.58465 4.60322 4.74374 4.83562 4.88736 4.96369 4.96827 4.99037 5.13670 5.17327 5.23522 5.35041 5.36475 5.40765 5.53395 5.61861 5.75232 5.76402 5.79157 5.95483 5.98073 6.31624 6.41115 6.54672 6.59926 6.76564 6.94777 7.33760 7.51439 7.69491 8.03642 8.22215 8.55721 8.73686 9.32493 10.80760 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.002760 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.585070 B =10142.710870 C =10796.770823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.168 3.832 5 H 0.081 0.919 6 C -0.167 4.167 7 C 0.024 3.976 8 N -0.452 5.452 9 C 0.110 3.890 10 C -0.275 4.275 11 C 0.602 3.398 12 O -0.534 6.534 13 N -0.602 5.602 14 C 0.088 3.912 15 C -0.118 4.118 16 C 0.220 3.780 17 O -0.563 6.563 18 C -0.555 4.555 19 H 0.082 0.918 20 C 0.077 3.923 21 N -0.884 5.884 22 Si 0.942 3.058 23 H -0.289 1.289 24 H -0.322 1.322 25 H -0.268 1.268 26 C 0.092 3.908 27 S 0.199 5.801 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.188 0.812 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.374 0.626 42 H 0.268 0.732 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 -12.796 15.586 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.107 3.893 5 H 0.099 0.901 6 C -0.226 4.226 7 C -0.251 4.251 8 N -0.166 5.166 9 C -0.048 4.048 10 C -0.399 4.399 11 C 0.389 3.611 12 O -0.414 6.414 13 N -0.334 5.334 14 C -0.036 4.036 15 C -0.156 4.156 16 C 0.179 3.821 17 O -0.371 6.371 18 C -0.592 4.592 19 H 0.100 0.900 20 C -0.129 4.129 21 N -0.519 5.519 22 Si 0.777 3.223 23 H -0.216 1.216 24 H -0.253 1.253 25 H -0.194 1.194 26 C -0.030 4.030 27 S 0.457 5.543 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.205 0.795 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.223 0.777 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.005 -13.311 15.627 24.850 hybrid contribution -0.555 0.512 -0.631 0.983 sum -14.560 -12.799 14.997 24.509 Atomic orbital electron populations 1.21728 0.93404 1.02250 1.03410 1.22607 0.96008 0.83593 1.00190 1.88106 1.18788 1.26332 1.94932 1.20411 0.83071 0.90597 0.95242 0.90102 1.22262 1.01751 1.03721 0.94899 1.27506 0.99160 0.97683 1.00768 1.66161 1.28036 0.98071 1.24347 1.22203 0.92045 0.99450 0.91130 1.25919 1.07209 0.97296 1.09462 1.16306 0.79276 0.86087 0.79411 1.90824 1.66459 1.17920 1.66167 1.48423 1.27567 1.11044 1.46387 1.22282 0.98377 0.82865 1.00111 1.23020 0.95289 1.00958 0.96351 1.20225 0.88407 0.90025 0.83445 1.86115 1.66813 1.39066 1.45058 1.21090 1.04016 1.26129 1.07942 0.89962 1.25094 0.94512 0.96659 0.96599 1.69958 1.22338 1.40426 1.19139 0.85850 0.76381 0.81689 0.78418 1.21617 1.25320 1.19374 1.23183 0.92246 0.94786 0.92775 1.84295 1.31499 1.04069 1.34399 0.91740 0.91007 0.91695 0.93161 0.93085 0.91249 0.91106 0.90631 0.79497 0.91440 0.91722 0.89600 0.89135 0.77721 0.92261 0.90462 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.38 6.47 37.16 0.24 0.62 16 3 O -0.36 -3.87 9.96 -35.23 -0.35 -4.22 16 4 C 0.17 1.57 3.23 -27.88 -0.09 1.48 16 5 H 0.08 0.57 7.78 -51.92 -0.40 0.16 16 6 C -0.17 -1.29 9.51 37.16 0.35 -0.93 16 7 C 0.02 0.29 6.28 -13.29 -0.08 0.20 16 8 N -0.45 -6.38 10.49 -11.50 -0.12 -6.50 16 9 C 0.11 1.58 11.10 -18.85 -0.21 1.37 16 10 C -0.27 -4.14 6.40 -37.09 -0.24 -4.38 16 11 C 0.60 10.88 7.81 -12.85 -0.10 10.78 16 12 O -0.53 -11.09 17.10 5.20 0.09 -11.00 16 13 N -0.60 -10.75 3.33 -172.06 -0.57 -11.32 16 14 C 0.09 1.38 5.19 -3.07 -0.02 1.36 16 15 C -0.12 -2.16 5.78 -24.89 -0.14 -2.30 16 16 C 0.22 4.60 0.69 -89.62 -0.06 4.54 16 17 O -0.56 -11.77 8.97 -35.23 -0.32 -12.09 16 18 C -0.55 -13.95 8.86 -34.44 -0.31 -14.25 16 19 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 20 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 21 N -0.88 -25.26 13.96 55.43 0.77 -24.48 16 22 Si 0.94 22.10 24.86 -169.99 -4.23 17.87 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.32 -7.80 7.11 56.52 0.40 -7.40 16 25 H -0.27 -6.02 5.22 56.52 0.30 -5.72 16 26 C 0.09 1.79 6.12 -2.53 -0.02 1.77 16 27 S 0.20 2.35 18.68 -107.50 -2.01 0.34 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 33 H 0.07 0.40 7.87 -51.93 -0.41 0.00 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.07 1.01 7.06 -51.93 -0.37 0.64 16 38 H 0.06 0.86 6.86 -51.93 -0.36 0.51 16 39 H 0.09 1.60 6.21 -51.93 -0.32 1.28 16 40 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 41 H 0.37 7.10 9.02 45.56 0.41 7.51 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.08 1.51 7.97 -51.93 -0.41 1.10 16 44 H 0.08 1.51 7.99 -51.93 -0.41 1.10 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -32.06 369.77 -7.26 -39.33 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.72 Total: 4.90 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.38 Total: 1.61 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.08 Total: -42.30 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.58 Total: -27.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.23 Total: 17.87 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.01 Total: 0.34 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.06 -7.26 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.509 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds