Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.46811 * 2 1 4 4 C 1.42897 * 113.99755 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47323 * 29.99753 * 4 3 2 6 6 C 1.53004 * 109.47173 * 270.00215 * 4 3 2 7 7 C 1.50699 * 109.47141 * 150.00077 * 4 3 2 8 8 N 1.29423 * 124.80384 * 44.95885 * 7 4 3 9 9 C 1.30950 * 117.36405 * 179.76926 * 8 7 4 10 10 C 1.35663 * 114.18598 * 0.48162 * 9 8 7 11 11 C 1.46684 * 126.12220 * 179.82434 * 10 9 8 12 12 O 1.21684 * 120.00358 * 354.56898 * 11 10 9 13 13 N 1.34785 * 119.99390 * 174.56641 * 11 10 9 14 14 C 1.47010 * 125.64857 * 4.95908 * 13 11 10 15 15 C 1.54328 * 107.27147 * 178.89564 * 14 13 11 16 16 C 1.55156 * 102.93936 * 337.80538 * 15 14 13 17 17 O 1.42893 * 111.00691 * 277.42770 * 16 15 14 18 18 C 1.50705 * 111.00128 * 153.61100 * 16 15 14 19 19 H 1.07993 * 120.00125 * 268.84314 * 18 16 15 20 20 C 1.37884 * 119.99563 * 88.84699 * 18 16 15 21 21 N 1.31515 * 119.99798 * 173.32288 * 20 18 16 22 22 Si 1.86802 * 120.00038 * 353.32864 * 20 18 16 23 23 H 1.48497 * 109.47420 * 85.88956 * 22 20 18 24 24 H 1.48497 * 109.46804 * 205.88970 * 22 20 18 25 25 H 1.48503 * 109.46869 * 325.88677 * 22 20 18 26 26 C 1.47427 * 125.64500 * 184.90447 * 13 11 10 27 27 S 1.70950 * 124.80383 * 225.00111 * 7 4 3 28 28 H 1.08993 * 109.47015 * 60.00070 * 1 2 3 29 29 H 1.08994 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47094 * 299.99659 * 1 2 3 31 31 H 1.09002 * 109.47094 * 240.00341 * 2 1 3 32 32 H 1.09003 * 109.47372 * 119.99537 * 2 1 3 33 33 H 1.08993 * 109.46942 * 60.00054 * 6 4 3 34 34 H 1.09007 * 109.46982 * 180.02562 * 6 4 3 35 35 H 1.09001 * 109.46511 * 299.99571 * 6 4 3 36 36 H 1.07997 * 122.90314 * 180.30192 * 9 8 7 37 37 H 1.09000 * 109.88564 * 59.47802 * 14 13 11 38 38 H 1.09005 * 109.88847 * 298.30985 * 14 13 11 39 39 H 1.09004 * 110.71870 * 219.44658 * 15 14 13 40 40 H 1.08995 * 110.87278 * 96.24200 * 15 14 13 41 41 H 0.96700 * 114.00084 * 174.86796 * 17 16 15 42 42 H 0.97002 * 120.00029 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.36056 * 85.33734 * 26 13 11 44 44 H 1.08997 * 110.36919 * 323.02016 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9398 1.5002 1.4417 7 6 3.8341 2.7266 -0.7110 8 7 3.2784 3.8820 -0.5338 9 6 3.7492 4.8888 -1.2263 10 6 4.7707 4.5626 -2.0572 11 6 5.4857 5.4805 -2.9505 12 8 5.1121 6.6330 -3.0643 13 7 6.5565 5.0474 -3.6450 14 6 7.0514 3.6636 -3.6817 15 6 8.2737 3.6389 -4.6235 16 6 8.0567 4.8955 -5.5073 17 8 7.1563 4.6171 -6.5813 18 6 9.3689 5.4220 -6.0291 19 1 9.9114 6.1698 -5.4698 20 6 9.8767 4.9490 -7.2205 21 7 10.9513 5.4993 -7.7420 22 14 9.0381 3.5266 -8.0941 23 1 7.9449 4.0484 -8.9530 24 1 10.0292 2.8091 -8.9356 25 1 8.4737 2.5914 -7.0880 26 6 7.4247 5.8827 -4.4946 27 16 5.0896 2.8402 -1.8656 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6482 0.5843 1.9555 34 1 5.0265 1.5868 1.4413 35 1 3.5076 2.3587 1.9558 36 1 3.3562 5.8915 -1.1451 37 1 6.2746 3.0020 -4.0652 38 1 7.3481 3.3492 -2.6810 39 1 8.2734 2.7346 -5.2321 40 1 9.2017 3.7209 -4.0576 41 1 6.9286 5.3911 -7.1144 42 1 11.3083 5.1668 -8.5804 43 1 8.2001 6.3577 -3.8934 44 1 6.8339 6.6354 -5.0166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -101.312223 kcal Electronic energy + Delta-G solvation = -27366.973636 eV Core-core repulsion = 23410.704832 eV Total energy + Delta-G solvation = -3956.268804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49777 -40.82254 -39.35528 -38.90490 -36.47197 -34.45844 -34.07072 -32.35834 -31.44853 -30.75944 -29.95761 -27.76668 -26.74177 -24.47740 -23.94122 -23.56760 -22.34183 -21.56545 -19.98190 -19.78212 -19.29104 -18.06013 -17.52947 -17.22299 -17.10408 -16.95953 -16.64955 -16.42261 -16.13331 -15.51957 -15.38470 -15.25617 -14.90458 -14.62026 -14.26500 -14.15940 -14.09626 -13.80523 -13.43871 -13.39900 -13.31489 -12.94350 -12.85377 -12.79238 -12.65969 -12.34835 -12.31793 -12.29752 -11.95360 -11.90841 -11.42103 -11.26886 -10.88922 -10.67022 -10.64832 -10.50907 -10.43900 -10.14175 -9.65773 -8.34134 -6.48626 -0.93589 -0.00925 0.41424 1.27240 1.51640 1.53910 1.71464 1.77671 1.99340 2.44287 2.70172 2.93245 2.96970 3.33568 3.48542 3.68621 3.74891 4.00176 4.02717 4.05994 4.09716 4.17791 4.22810 4.34318 4.34914 4.42092 4.51908 4.62522 4.74741 4.79239 4.87089 4.90075 4.97280 5.04323 5.06439 5.12531 5.23600 5.29052 5.34152 5.49513 6.03689 6.16493 6.28967 6.55885 6.58749 6.82757 6.91588 7.29075 8.78622 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.002760 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.585070 B =10142.710870 C =10796.770823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.161 3.839 5 H 0.112 0.888 6 C -0.164 4.164 7 C 0.031 3.969 8 N -0.479 5.479 9 C 0.116 3.884 10 C -0.310 4.310 11 C 0.603 3.397 12 O -0.573 6.573 13 N -0.605 5.605 14 C 0.092 3.908 15 C -0.116 4.116 16 C 0.217 3.783 17 O -0.563 6.563 18 C -0.548 4.548 19 H 0.046 0.954 20 C 0.029 3.971 21 N -0.934 5.934 22 Si 0.998 3.002 23 H -0.286 1.286 24 H -0.334 1.334 25 H -0.246 1.246 26 C 0.098 3.902 27 S 0.258 5.742 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.187 0.813 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.381 0.619 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 -16.321 16.956 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.100 3.900 5 H 0.129 0.871 6 C -0.223 4.223 7 C -0.243 4.243 8 N -0.193 5.193 9 C -0.043 4.043 10 C -0.435 4.435 11 C 0.392 3.608 12 O -0.455 6.455 13 N -0.336 5.336 14 C -0.031 4.031 15 C -0.154 4.154 16 C 0.176 3.824 17 O -0.371 6.371 18 C -0.586 4.586 19 H 0.065 0.935 20 C -0.172 4.172 21 N -0.571 5.571 22 Si 0.831 3.169 23 H -0.213 1.213 24 H -0.266 1.266 25 H -0.171 1.171 26 C -0.024 4.024 27 S 0.518 5.482 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.203 0.797 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.401 -16.871 17.019 28.486 hybrid contribution -0.170 1.614 -0.956 1.883 sum -15.571 -15.258 16.063 27.079 Atomic orbital electron populations 1.21764 0.93379 1.03356 1.02348 1.22838 0.96126 0.82367 1.01706 1.88076 1.19396 1.28516 1.95138 1.20749 0.83082 0.90016 0.96203 0.87072 1.22259 1.02288 1.03988 0.93749 1.28175 0.98281 0.98103 0.99752 1.66241 1.29099 0.98722 1.25234 1.22278 0.91575 0.99810 0.90633 1.25628 1.08194 0.99382 1.10249 1.16628 0.78907 0.86065 0.79224 1.90792 1.67472 1.19782 1.67437 1.48401 1.27452 1.11624 1.46146 1.22366 0.97588 0.81882 1.01311 1.22937 0.96868 0.99215 0.96347 1.20128 0.86462 0.91956 0.83860 1.86080 1.66309 1.39618 1.45141 1.21286 1.05343 1.24679 1.07255 0.93543 1.25831 0.94950 0.98868 0.97517 1.70079 1.24546 1.42493 1.20026 0.84934 0.75087 0.79278 0.77622 1.21323 1.26562 1.17078 1.22885 0.92262 0.94532 0.92733 1.83877 1.30567 1.00557 1.33219 0.93146 0.88827 0.92414 0.91969 0.91111 0.89014 0.89954 0.92677 0.79658 0.89878 0.88658 0.89187 0.88715 0.76926 0.92349 0.91167 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.52 6.47 71.98 0.47 0.98 16 3 O -0.39 -7.35 9.96 -148.98 -1.48 -8.84 16 4 C 0.16 2.45 3.23 29.85 0.10 2.55 16 5 H 0.11 1.01 7.78 -2.38 -0.02 0.99 16 6 C -0.16 -1.99 9.51 71.98 0.68 -1.30 16 7 C 0.03 0.66 6.28 88.46 0.56 1.22 16 8 N -0.48 -12.79 10.49 -190.30 -2.00 -14.78 16 9 C 0.12 3.26 11.10 84.23 0.93 4.19 16 10 C -0.31 -8.89 6.40 23.88 0.15 -8.74 16 11 C 0.60 21.33 7.81 86.45 0.68 22.01 16 12 O -0.57 -24.10 17.10 -4.30 -0.07 -24.18 16 13 N -0.60 -20.73 3.33 -816.49 -2.72 -23.45 16 14 C 0.09 2.58 5.19 86.73 0.45 3.03 16 15 C -0.12 -3.93 5.78 31.78 0.18 -3.75 16 16 C 0.22 8.87 0.69 -10.15 -0.01 8.86 16 17 O -0.56 -22.50 8.97 -148.98 -1.34 -23.84 16 18 C -0.55 -27.93 8.86 25.60 0.23 -27.70 16 19 H 0.05 2.65 7.98 -2.91 -0.02 2.63 16 20 C 0.03 1.54 5.46 84.66 0.46 2.00 16 21 N -0.93 -54.75 13.96 21.45 0.30 -54.45 16 22 Si 1.00 44.83 24.86 68.60 1.71 46.53 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.33 -15.56 7.11 99.48 0.71 -14.86 16 25 H -0.25 -10.08 5.22 99.48 0.52 -9.56 16 26 C 0.10 3.83 6.12 86.85 0.53 4.36 16 27 S 0.26 5.19 18.68 -56.49 -1.06 4.14 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.07 0.52 7.87 -2.39 -0.02 0.50 16 33 H 0.09 0.71 7.87 -2.39 -0.02 0.69 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.08 2.13 7.06 -2.39 -0.02 2.11 16 38 H 0.10 2.13 6.86 -2.38 -0.02 2.12 16 39 H 0.09 3.02 6.21 -2.39 -0.01 3.00 16 40 H 0.09 3.13 8.03 -2.39 -0.02 3.12 16 41 H 0.38 14.03 9.02 -74.06 -0.67 13.36 16 42 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.07 2.81 7.97 -2.38 -0.02 2.79 16 44 H 0.07 2.66 7.99 -2.39 -0.02 2.64 16 Total: -1.00 -70.91 369.77 -0.33 -71.24 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.17 Total: 20.81 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.15 Total: 6.81 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.41 Total: -92.68 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -2.89 Total: -56.85 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.71 Total: 46.53 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.06 Total: 4.14 kcal Total: -70.91 -0.33 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.068 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds