Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47138 * 2 1 4 4 C 1.42897 * 113.99743 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47483 * 30.00634 * 4 3 2 6 6 C 1.53000 * 109.47688 * 270.00077 * 4 3 2 7 7 C 1.50704 * 109.46860 * 150.00352 * 4 3 2 8 8 N 1.29431 * 124.80544 * 45.02615 * 7 4 3 9 9 C 1.30938 * 117.36562 * 179.97438 * 8 7 4 10 10 C 1.35662 * 114.19323 * 359.97438 * 9 8 7 11 11 C 1.46675 * 126.13545 * 180.02562 * 10 9 8 12 12 O 1.21691 * 119.99747 * 354.67715 * 11 10 9 13 13 N 1.34778 * 120.00549 * 174.67704 * 11 10 9 14 14 C 1.47017 * 125.64545 * 4.93692 * 13 11 10 15 15 C 1.54326 * 107.27058 * 181.02178 * 14 13 11 16 16 C 1.55151 * 102.94391 * 22.19306 * 15 14 13 17 17 O 1.42903 * 111.00694 * 82.56846 * 16 15 14 18 18 C 1.50696 * 111.00591 * 206.38413 * 16 15 14 19 19 H 1.07998 * 120.00005 * 359.31141 * 18 16 15 20 20 C 1.37877 * 119.99983 * 179.30599 * 18 16 15 21 21 N 1.31508 * 120.00358 * 352.21746 * 20 18 16 22 22 Si 1.86804 * 119.99896 * 172.21584 * 20 18 16 23 23 H 1.48495 * 109.47139 * 94.99113 * 22 20 18 24 24 H 1.48504 * 109.46981 * 214.99680 * 22 20 18 25 25 H 1.48503 * 109.46877 * 334.99238 * 22 20 18 26 26 C 1.47422 * 125.65007 * 184.62502 * 13 11 10 27 27 S 1.70952 * 124.80415 * 224.72132 * 7 4 3 28 28 H 1.09005 * 109.47646 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47094 * 299.99779 * 1 2 3 30 30 H 1.09001 * 109.47253 * 60.00159 * 1 2 3 31 31 H 1.09005 * 109.46823 * 239.99842 * 2 1 3 32 32 H 1.09005 * 109.46741 * 120.00607 * 2 1 3 33 33 H 1.09003 * 109.47113 * 300.00783 * 6 4 3 34 34 H 1.09007 * 109.46642 * 60.00283 * 6 4 3 35 35 H 1.08994 * 109.47311 * 180.02562 * 6 4 3 36 36 H 1.07998 * 122.90387 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.88100 * 300.43765 * 14 13 11 38 38 H 1.08997 * 109.88619 * 61.44779 * 14 13 11 39 39 H 1.09006 * 110.71700 * 140.55722 * 15 14 13 40 40 H 1.08992 * 110.71920 * 263.82479 * 15 14 13 41 41 H 0.96700 * 114.00178 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00584 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.36923 * 274.74450 * 26 13 11 44 44 H 1.08997 * 110.36500 * 37.07018 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9388 1.5004 1.4432 7 6 3.8348 2.7262 -0.7098 8 7 3.2798 3.8820 -0.5325 9 6 3.7482 4.8877 -1.2280 10 6 4.7741 4.5625 -2.0539 11 6 5.4907 5.4802 -2.9459 12 8 5.1159 6.6321 -3.0622 13 7 6.5641 5.0478 -3.6368 14 6 7.0612 3.6647 -3.6701 15 6 8.3183 3.6511 -4.5652 16 6 8.7865 5.1299 -4.5293 17 8 9.5589 5.3944 -3.3565 18 6 9.5610 5.4816 -5.7733 19 1 9.7303 4.7335 -6.5335 20 6 10.0533 6.7585 -5.9408 21 7 9.7201 7.7082 -5.0943 22 14 11.1939 7.1397 -7.3703 23 1 10.4019 7.6772 -8.5056 24 1 12.1988 8.1476 -6.9465 25 1 11.8876 5.8972 -7.7949 26 6 7.4304 5.8823 -4.4892 27 16 5.0957 2.8409 -1.8584 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.5061 2.3590 1.9569 34 1 3.6466 0.5845 1.9571 35 1 5.0253 1.5869 1.4436 36 1 3.3522 5.8894 -1.1507 37 1 7.3201 3.3394 -2.6625 38 1 6.2990 3.0067 -4.0875 39 1 9.0819 2.9946 -4.1478 40 1 8.0646 3.3514 -5.5819 41 1 9.8733 6.3064 -3.2900 42 1 10.0661 8.6066 -5.2123 43 1 7.0101 5.9650 -5.4915 44 1 7.5583 6.8706 -4.0477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -83.472254 kcal Electronic energy + Delta-G solvation = -27333.074807 eV Core-core repulsion = 23377.579602 eV Total energy + Delta-G solvation = -3955.495205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10429 -39.34062 -38.34208 -37.14899 -34.43174 -33.27953 -32.27037 -30.87785 -30.42558 -29.56986 -27.94896 -26.40314 -25.13510 -23.36039 -23.06896 -22.54337 -20.89321 -19.75003 -18.79039 -18.23379 -17.28704 -16.88661 -16.22977 -16.04807 -15.94987 -15.40083 -15.20600 -14.85986 -14.45819 -14.32219 -14.03819 -13.57864 -13.41029 -13.28665 -13.13497 -12.98097 -12.78646 -12.37861 -12.21528 -12.08209 -11.89636 -11.72821 -11.68878 -11.45059 -11.24881 -11.09016 -10.91560 -10.77001 -10.56524 -10.30361 -10.12397 -9.70698 -9.62574 -9.42585 -9.36227 -8.97683 -8.79372 -8.47110 -7.91536 -6.35597 -4.45199 0.26266 1.11216 1.56924 2.54775 3.15977 3.24828 3.27600 3.37912 3.43011 3.53526 3.90843 4.21040 4.43255 4.65386 4.80470 4.81766 4.89506 4.92342 5.00712 5.02237 5.20764 5.22313 5.33126 5.42859 5.45161 5.47511 5.57712 5.66342 5.80569 5.84503 5.87315 6.03950 6.13091 6.36702 6.60142 6.75103 6.82525 6.84067 7.15662 7.24274 7.65378 7.66827 7.89763 8.01346 8.49885 8.58687 9.23328 9.28233 10.70964 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002490 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.325509 B =11242.211623 C =11577.972351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.170 3.830 5 H 0.080 0.920 6 C -0.168 4.168 7 C 0.019 3.981 8 N -0.451 5.451 9 C 0.104 3.896 10 C -0.267 4.267 11 C 0.597 3.403 12 O -0.534 6.534 13 N -0.601 5.601 14 C 0.091 3.909 15 C -0.112 4.112 16 C 0.250 3.750 17 O -0.582 6.582 18 C -0.541 4.541 19 H 0.069 0.931 20 C 0.072 3.928 21 N -0.891 5.891 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.096 3.904 27 S 0.196 5.804 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.384 0.616 42 H 0.271 0.729 43 H 0.065 0.935 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.207 -16.077 9.208 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.108 3.892 5 H 0.098 0.902 6 C -0.227 4.227 7 C -0.256 4.256 8 N -0.165 5.165 9 C -0.053 4.053 10 C -0.392 4.392 11 C 0.383 3.617 12 O -0.414 6.414 13 N -0.333 5.333 14 C -0.033 4.033 15 C -0.150 4.150 16 C 0.209 3.791 17 O -0.391 6.391 18 C -0.579 4.579 19 H 0.087 0.913 20 C -0.132 4.132 21 N -0.529 5.529 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.024 4.024 27 S 0.454 5.546 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.205 0.795 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.234 0.766 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.402 -16.443 9.287 22.060 hybrid contribution 0.431 1.568 -0.776 1.802 sum -10.972 -14.876 8.511 20.350 Atomic orbital electron populations 1.21728 0.93459 1.02192 1.03403 1.22594 0.95963 0.83695 1.00140 1.88105 1.18908 1.26219 1.94930 1.20391 0.82921 0.90646 0.95208 0.90180 1.22265 1.01822 1.03637 0.94946 1.27458 0.99221 0.97653 1.01277 1.66142 1.28221 0.98078 1.24103 1.22182 0.92406 0.99420 0.91305 1.26039 1.06590 0.97239 1.09287 1.16342 0.79729 0.86085 0.79576 1.90824 1.66567 1.17816 1.66163 1.48655 1.27174 1.11125 1.46347 1.22162 0.97337 0.83244 1.00568 1.22604 0.94230 0.99533 0.98608 1.19639 0.86305 0.88123 0.85046 1.86088 1.72593 1.35647 1.44733 1.21445 1.35332 0.96776 1.04338 0.91318 1.25090 0.95584 0.95813 0.96728 1.69726 1.43360 1.02413 1.37389 0.86386 0.80459 0.78312 0.81757 1.20490 1.20871 1.19587 1.23462 0.90346 0.96191 0.92447 1.84207 1.30921 1.04374 1.35146 0.91055 0.91706 0.91757 0.93215 0.93128 0.90643 0.91334 0.91074 0.79543 0.91573 0.92140 0.90285 0.90028 0.76588 0.91863 0.91651 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.40 6.47 37.16 0.24 0.64 16 3 O -0.36 -4.07 9.96 -35.23 -0.35 -4.43 16 4 C 0.17 1.71 3.22 -27.88 -0.09 1.62 16 5 H 0.08 0.61 7.78 -51.93 -0.40 0.20 16 6 C -0.17 -1.44 9.51 37.16 0.35 -1.08 16 7 C 0.02 0.25 6.28 -13.29 -0.08 0.16 16 8 N -0.45 -6.91 10.49 -11.50 -0.12 -7.03 16 9 C 0.10 1.67 11.09 -18.85 -0.21 1.46 16 10 C -0.27 -4.50 6.40 -37.10 -0.24 -4.74 16 11 C 0.60 12.27 7.81 -12.85 -0.10 12.17 16 12 O -0.53 -12.64 17.17 5.20 0.09 -12.55 16 13 N -0.60 -12.32 3.32 -171.92 -0.57 -12.89 16 14 C 0.09 1.56 5.20 -3.07 -0.02 1.54 16 15 C -0.11 -2.09 6.12 -24.90 -0.15 -2.24 16 16 C 0.25 5.80 0.89 -89.51 -0.08 5.72 16 17 O -0.58 -14.27 13.19 -35.23 -0.46 -14.74 16 18 C -0.54 -13.50 8.24 -34.44 -0.28 -13.79 16 19 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 20 C 0.07 1.81 5.24 -17.82 -0.09 1.71 16 21 N -0.89 -23.13 10.75 55.43 0.60 -22.54 16 22 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 C 0.10 2.26 5.50 -2.41 -0.01 2.25 16 27 S 0.20 2.53 18.68 -107.50 -2.01 0.52 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.19 2.81 8.06 -52.49 -0.42 2.39 16 37 H 0.07 1.06 6.69 -51.93 -0.35 0.71 16 38 H 0.06 0.88 7.20 -51.93 -0.37 0.50 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 41 H 0.38 9.73 7.28 45.56 0.33 10.06 16 42 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.07 1.57 8.04 -51.93 -0.42 1.16 16 44 H 0.09 2.34 7.48 -51.93 -0.39 1.96 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -30.15 376.00 -8.33 -38.47 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.76 Total: 9.98 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.38 Total: 4.78 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.10 Total: -42.46 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.73 Total: -31.71 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.01 Total: 0.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.15 -8.33 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds