Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47138 * 2 1 4 4 C 1.42897 * 113.99743 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47483 * 30.00634 * 4 3 2 6 6 C 1.53000 * 109.47688 * 270.00077 * 4 3 2 7 7 C 1.50704 * 109.46860 * 150.00352 * 4 3 2 8 8 N 1.29431 * 124.80544 * 45.02615 * 7 4 3 9 9 C 1.30938 * 117.36562 * 179.97438 * 8 7 4 10 10 C 1.35662 * 114.19323 * 359.97438 * 9 8 7 11 11 C 1.46675 * 126.13545 * 180.02562 * 10 9 8 12 12 O 1.21691 * 119.99747 * 354.67715 * 11 10 9 13 13 N 1.34778 * 120.00549 * 174.67704 * 11 10 9 14 14 C 1.47017 * 125.64545 * 4.93692 * 13 11 10 15 15 C 1.54326 * 107.27058 * 181.02178 * 14 13 11 16 16 C 1.55151 * 102.94391 * 22.19306 * 15 14 13 17 17 O 1.42903 * 111.00694 * 82.56846 * 16 15 14 18 18 C 1.50696 * 111.00591 * 206.38413 * 16 15 14 19 19 H 1.07998 * 120.00005 * 359.31141 * 18 16 15 20 20 C 1.37877 * 119.99983 * 179.30599 * 18 16 15 21 21 N 1.31508 * 120.00358 * 352.21746 * 20 18 16 22 22 Si 1.86804 * 119.99896 * 172.21584 * 20 18 16 23 23 H 1.48495 * 109.47139 * 94.99113 * 22 20 18 24 24 H 1.48504 * 109.46981 * 214.99680 * 22 20 18 25 25 H 1.48503 * 109.46877 * 334.99238 * 22 20 18 26 26 C 1.47422 * 125.65007 * 184.62502 * 13 11 10 27 27 S 1.70952 * 124.80415 * 224.72132 * 7 4 3 28 28 H 1.09005 * 109.47646 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47094 * 299.99779 * 1 2 3 30 30 H 1.09001 * 109.47253 * 60.00159 * 1 2 3 31 31 H 1.09005 * 109.46823 * 239.99842 * 2 1 3 32 32 H 1.09005 * 109.46741 * 120.00607 * 2 1 3 33 33 H 1.09003 * 109.47113 * 300.00783 * 6 4 3 34 34 H 1.09007 * 109.46642 * 60.00283 * 6 4 3 35 35 H 1.08994 * 109.47311 * 180.02562 * 6 4 3 36 36 H 1.07998 * 122.90387 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.88100 * 300.43765 * 14 13 11 38 38 H 1.08997 * 109.88619 * 61.44779 * 14 13 11 39 39 H 1.09006 * 110.71700 * 140.55722 * 15 14 13 40 40 H 1.08992 * 110.71920 * 263.82479 * 15 14 13 41 41 H 0.96700 * 114.00178 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00584 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.36923 * 274.74450 * 26 13 11 44 44 H 1.08997 * 110.36500 * 37.07018 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9388 1.5004 1.4432 7 6 3.8348 2.7262 -0.7098 8 7 3.2798 3.8820 -0.5325 9 6 3.7482 4.8877 -1.2280 10 6 4.7741 4.5625 -2.0539 11 6 5.4907 5.4802 -2.9459 12 8 5.1159 6.6321 -3.0622 13 7 6.5641 5.0478 -3.6368 14 6 7.0612 3.6647 -3.6701 15 6 8.3183 3.6511 -4.5652 16 6 8.7865 5.1299 -4.5293 17 8 9.5589 5.3944 -3.3565 18 6 9.5610 5.4816 -5.7733 19 1 9.7303 4.7335 -6.5335 20 6 10.0533 6.7585 -5.9408 21 7 9.7201 7.7082 -5.0943 22 14 11.1939 7.1397 -7.3703 23 1 10.4019 7.6772 -8.5056 24 1 12.1988 8.1476 -6.9465 25 1 11.8876 5.8972 -7.7949 26 6 7.4304 5.8823 -4.4892 27 16 5.0957 2.8409 -1.8584 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.5061 2.3590 1.9569 34 1 3.6466 0.5845 1.9571 35 1 5.0253 1.5869 1.4436 36 1 3.3522 5.8894 -1.1507 37 1 7.3201 3.3394 -2.6625 38 1 6.2990 3.0067 -4.0875 39 1 9.0819 2.9946 -4.1478 40 1 8.0646 3.3514 -5.5819 41 1 9.8733 6.3064 -3.2900 42 1 10.0661 8.6066 -5.2123 43 1 7.0101 5.9650 -5.4915 44 1 7.5583 6.8706 -4.0477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -105.495731 kcal Electronic energy + Delta-G solvation = -27334.029816 eV Core-core repulsion = 23377.579602 eV Total energy + Delta-G solvation = -3956.450215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41825 -40.72753 -39.24888 -38.76922 -36.20812 -34.21056 -34.05266 -32.23677 -31.41424 -30.70026 -29.60892 -27.68335 -26.71854 -24.60789 -23.92817 -23.52788 -22.18827 -21.51019 -19.91186 -19.60223 -19.10077 -18.01128 -17.44243 -17.24511 -16.96354 -16.94413 -16.60749 -16.16698 -16.04958 -15.48790 -15.30139 -14.91494 -14.81604 -14.73773 -14.23804 -14.11066 -13.79200 -13.61757 -13.44212 -13.37231 -12.95099 -12.90699 -12.79951 -12.74283 -12.51783 -12.35935 -12.31521 -12.27158 -12.18672 -11.89527 -11.38299 -11.27207 -10.86938 -10.71680 -10.62596 -10.50264 -10.33204 -10.11803 -9.55715 -8.26693 -6.43090 -0.91893 -0.00015 0.42446 1.29098 1.42041 1.45656 1.55469 1.86879 2.03155 2.38352 2.71482 2.94918 2.98687 3.44394 3.67658 3.69716 4.02181 4.03620 4.04322 4.08380 4.14164 4.24332 4.26995 4.36533 4.47185 4.53482 4.63170 4.68377 4.79830 4.88298 4.97680 4.98863 5.01105 5.05782 5.18775 5.24285 5.30427 5.34191 5.41998 5.74019 6.00869 6.18255 6.40108 6.56867 6.65060 6.90542 7.26143 7.31803 8.78293 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002490 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.325509 B =11242.211623 C =11577.972351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.392 6.392 4 C 0.163 3.837 5 H 0.114 0.886 6 C -0.165 4.165 7 C 0.029 3.971 8 N -0.477 5.477 9 C 0.113 3.887 10 C -0.309 4.309 11 C 0.593 3.407 12 O -0.581 6.581 13 N -0.607 5.607 14 C 0.091 3.909 15 C -0.105 4.105 16 C 0.234 3.766 17 O -0.586 6.586 18 C -0.555 4.555 19 H 0.074 0.926 20 C 0.026 3.974 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.108 3.892 27 S 0.265 5.735 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.183 0.817 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.050 0.950 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 -19.924 9.509 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.311 6.311 4 C 0.102 3.898 5 H 0.132 0.868 6 C -0.224 4.224 7 C -0.246 4.246 8 N -0.192 5.192 9 C -0.046 4.046 10 C -0.434 4.434 11 C 0.382 3.618 12 O -0.464 6.464 13 N -0.338 5.338 14 C -0.032 4.032 15 C -0.143 4.143 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.092 0.908 20 C -0.175 4.175 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.014 4.014 27 S 0.524 5.476 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.224 0.776 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.354 -20.361 9.587 25.207 hybrid contribution 0.333 2.668 -0.798 2.804 sum -11.022 -17.693 8.788 22.622 Atomic orbital electron populations 1.21767 0.93378 1.03374 1.02319 1.22847 0.96122 0.82339 1.01769 1.88077 1.19335 1.28592 1.95130 1.20734 0.83103 0.89913 0.96076 0.86824 1.22268 1.02228 1.04008 0.93884 1.28228 0.98119 0.98144 1.00064 1.66237 1.29301 0.98698 1.24937 1.22231 0.91828 0.99802 0.90746 1.25653 1.07744 0.99742 1.10233 1.16802 0.79427 0.86132 0.79440 1.90778 1.67869 1.20098 1.67684 1.48666 1.26925 1.12177 1.46003 1.22362 0.97583 0.81765 1.01501 1.22621 0.95141 0.96391 1.00164 1.19878 0.85519 0.91130 0.84133 1.86078 1.72821 1.34951 1.45510 1.21791 1.35432 0.96971 1.05112 0.90784 1.25833 0.96869 0.95850 0.98945 1.69852 1.44197 1.02557 1.38864 0.85450 0.78565 0.78146 0.78903 1.20544 1.21033 1.18710 1.23047 0.91592 0.95043 0.91735 1.83719 1.29811 1.00122 1.33899 0.88743 0.92514 0.93129 0.91813 0.91129 0.92802 0.88815 0.90123 0.79992 0.90040 0.88778 0.88616 0.88537 0.77576 0.92096 0.93196 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.54 6.47 71.98 0.47 1.00 16 3 O -0.39 -7.79 9.96 -148.98 -1.48 -9.28 16 4 C 0.16 2.73 3.22 29.85 0.10 2.83 16 5 H 0.11 1.14 7.78 -2.39 -0.02 1.13 16 6 C -0.16 -2.30 9.51 71.98 0.68 -1.62 16 7 C 0.03 0.68 6.28 88.46 0.56 1.24 16 8 N -0.48 -14.17 10.49 -190.30 -2.00 -16.16 16 9 C 0.11 3.64 11.09 84.23 0.93 4.57 16 10 C -0.31 -10.31 6.40 23.88 0.15 -10.16 16 11 C 0.59 25.03 7.81 86.45 0.68 25.70 16 12 O -0.58 -29.09 17.17 -4.32 -0.07 -29.17 16 13 N -0.61 -25.01 3.32 -816.06 -2.71 -27.73 16 14 C 0.09 2.89 5.20 86.73 0.45 3.34 16 15 C -0.11 -3.72 6.12 31.78 0.19 -3.52 16 16 C 0.23 10.88 0.89 -10.07 -0.01 10.87 16 17 O -0.59 -29.06 13.19 -148.98 -1.97 -31.03 16 18 C -0.55 -27.70 8.24 25.60 0.21 -27.49 16 19 H 0.07 3.53 7.78 -2.91 -0.02 3.51 16 20 C 0.03 1.33 5.24 84.66 0.44 1.77 16 21 N -0.92 -49.12 10.75 21.45 0.23 -48.89 16 22 Si 0.96 40.73 29.54 68.60 2.03 42.76 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 C 0.11 5.26 5.50 86.93 0.48 5.73 16 27 S 0.27 6.07 18.68 -56.49 -1.06 5.01 16 28 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.58 8.09 -2.38 -0.02 0.56 16 32 H 0.07 0.56 7.87 -2.38 -0.02 0.54 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 0.85 7.87 -2.38 -0.02 0.83 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.18 5.78 8.06 -2.91 -0.02 5.75 16 37 H 0.08 2.35 6.69 -2.38 -0.02 2.34 16 38 H 0.09 2.38 7.20 -2.39 -0.02 2.36 16 39 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 40 H 0.10 3.10 8.02 -2.39 -0.02 3.08 16 41 H 0.38 19.73 7.28 -74.06 -0.54 19.19 16 42 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.05 2.51 8.04 -2.39 -0.02 2.49 16 44 H 0.05 2.70 7.48 -2.39 -0.02 2.68 16 Total: -1.00 -68.46 376.00 -0.47 -68.93 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.48 Total: 32.27 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.07 Total: 13.27 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.48 Total: -92.78 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -3.52 Total: -69.47 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.06 Total: 5.01 kcal Total: -68.46 -0.47 -68.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.562 kcal (2) G-P(sol) polarization free energy of solvation -68.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds