Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46872 * 2 1 4 4 C 1.42900 * 113.99906 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47373 * 180.02562 * 4 3 2 6 6 N 1.29433 * 124.80685 * 89.97134 * 5 4 3 7 7 C 1.30945 * 117.36581 * 179.73079 * 6 5 4 8 8 C 1.50699 * 122.90408 * 180.35010 * 7 6 5 9 9 C 1.35660 * 114.18951 * 0.53109 * 7 6 5 10 10 C 1.46677 * 126.13081 * 179.78282 * 9 7 6 11 11 O 1.21691 * 120.00086 * 359.71916 * 10 9 7 12 12 N 1.34778 * 120.00054 * 179.71350 * 10 9 7 13 13 C 1.47023 * 125.64931 * 0.04132 * 12 10 9 14 14 C 1.54428 * 107.28135 * 181.02402 * 13 12 10 15 15 C 1.55160 * 102.89386 * 22.18588 * 14 13 12 16 16 O 1.42905 * 111.00102 * 82.59578 * 15 14 13 17 17 C 1.50701 * 111.00410 * 206.40650 * 15 14 13 18 18 H 1.07994 * 120.00187 * 356.81970 * 17 15 14 19 19 C 1.37878 * 119.99769 * 176.82468 * 17 15 14 20 20 N 1.31509 * 120.00073 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47218 * 59.99675 * 21 19 17 23 23 H 1.48498 * 109.46766 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46824 * 299.99519 * 21 19 17 25 25 C 1.47433 * 125.64773 * 179.97438 * 12 10 9 26 26 S 1.70952 * 124.80316 * 270.00322 * 5 4 3 27 27 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46771 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47192 * 59.99639 * 1 2 3 30 30 H 1.08992 * 109.47473 * 240.00011 * 2 1 3 31 31 H 1.09003 * 109.47211 * 119.99841 * 2 1 3 32 32 H 1.09002 * 109.47098 * 59.99777 * 4 3 2 33 33 H 1.09005 * 109.47253 * 300.00092 * 4 3 2 34 34 H 1.08994 * 109.47156 * 270.19621 * 8 7 6 35 35 H 1.09001 * 109.46729 * 30.19742 * 8 7 6 36 36 H 1.08993 * 109.46758 * 150.19626 * 8 7 6 37 37 H 1.08996 * 109.88347 * 300.43906 * 13 12 10 38 38 H 1.09002 * 109.87899 * 61.45748 * 13 12 10 39 39 H 1.08999 * 110.72281 * 263.84993 * 14 13 12 40 40 H 1.08996 * 110.76416 * 140.54540 * 14 13 12 41 41 H 0.96697 * 113.99904 * 183.18164 * 16 15 14 42 42 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.36418 * 37.07392 * 25 12 10 44 44 H 1.08998 * 110.45793 * 274.79533 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 7 4.0090 3.6299 1.0642 7 6 4.3493 4.8830 0.8951 8 6 4.6080 5.8232 2.0441 9 6 4.4449 5.2626 -0.4037 10 6 4.8015 6.5997 -0.8899 11 8 5.0395 7.4920 -0.0974 12 7 4.8658 6.8402 -2.2145 13 6 4.6033 5.8588 -3.2773 14 6 4.8221 6.5753 -4.6277 15 6 5.7445 7.7626 -4.2442 16 8 7.1112 7.3496 -4.1808 17 6 5.5743 8.9111 -5.2049 18 1 4.9157 8.8110 -6.0549 19 6 6.2594 10.0897 -4.9986 20 7 7.0611 10.2117 -3.9633 21 14 6.0478 11.5136 -6.1890 22 1 4.6220 11.9277 -6.2171 23 1 6.8862 12.6569 -5.7472 24 1 6.4667 11.0884 -7.5488 25 6 5.2096 8.1313 -2.8378 26 16 4.0715 3.8594 -1.4022 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9768 0.8908 34 1 3.6780 6.3169 2.3260 35 1 4.9929 5.2604 2.8945 36 1 5.3401 6.5723 1.7427 37 1 5.2939 5.0204 -3.1865 38 1 3.5758 5.5019 -3.2068 39 1 3.8759 6.9366 -5.0304 40 1 5.3185 5.9155 -5.3393 41 1 7.7196 8.0457 -3.8974 42 1 7.5428 11.0410 -3.8180 43 1 5.9818 8.6381 -2.2591 44 1 4.3242 8.7616 -2.9216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -84.361730 kcal Electronic energy + Delta-G solvation = -27462.236213 eV Core-core repulsion = 23506.702438 eV Total energy + Delta-G solvation = -3955.533776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24139 -39.25110 -38.25896 -37.14935 -34.39157 -32.81635 -32.24623 -31.26371 -30.45750 -28.55681 -28.05982 -27.58896 -25.11561 -23.15273 -23.06458 -22.68338 -20.92525 -19.73558 -18.31505 -18.05915 -17.23125 -17.12928 -16.62198 -16.09157 -15.69107 -15.49398 -15.18374 -14.55624 -14.48652 -14.32979 -13.97154 -13.43968 -13.28520 -13.13612 -13.03197 -12.97330 -12.70863 -12.33403 -12.31847 -12.10361 -11.77737 -11.69641 -11.58018 -11.54921 -11.25286 -11.06353 -10.92695 -10.75368 -10.54650 -10.27562 -10.07332 -9.73225 -9.56835 -9.41766 -9.34930 -8.82127 -8.73247 -8.44726 -7.88832 -6.33431 -4.43407 0.23781 1.19928 1.63117 2.42467 3.19025 3.25550 3.26666 3.31459 3.45014 3.52887 4.03759 4.22512 4.59417 4.68543 4.83107 4.88059 4.95631 4.98657 5.00430 5.03731 5.18397 5.24624 5.32841 5.48140 5.55250 5.68273 5.77601 5.79734 5.85825 5.88544 5.95622 6.08603 6.38542 6.45732 6.61810 6.74313 6.75017 6.84212 7.16328 7.25759 7.63219 7.68728 7.93235 8.03155 8.52580 8.60524 9.25230 9.34981 10.73882 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002768 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.870102 B =10114.511810 C =10974.144356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.143 3.857 5 C 0.020 3.980 6 N -0.460 5.460 7 C 0.134 3.866 8 C -0.086 4.086 9 C -0.276 4.276 10 C 0.598 3.402 11 O -0.531 6.531 12 N -0.601 5.601 13 C 0.091 3.909 14 C -0.112 4.112 15 C 0.250 3.750 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.068 0.932 19 C 0.072 3.928 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.095 3.905 26 S 0.210 5.790 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.385 0.615 42 H 0.272 0.728 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -18.110 5.861 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.300 6.300 4 C 0.064 3.936 5 C -0.255 4.255 6 N -0.177 5.177 7 C -0.004 4.004 8 C -0.145 4.145 9 C -0.400 4.400 10 C 0.385 3.615 11 O -0.411 6.411 12 N -0.332 5.332 13 C -0.033 4.033 14 C -0.150 4.150 15 C 0.209 3.791 16 O -0.392 6.392 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.026 4.026 26 S 0.469 5.531 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.328 -18.452 5.634 21.013 hybrid contribution 0.371 1.524 0.329 1.603 sum -7.957 -16.928 5.963 19.632 Atomic orbital electron populations 1.21748 0.93422 1.02332 1.03423 1.22520 0.95870 0.83137 1.00384 1.87981 1.19409 1.27045 1.95521 1.20713 0.82692 0.87870 1.02359 1.27006 1.03822 1.00982 0.93646 1.66022 1.14574 1.05239 1.31853 1.20585 0.95923 0.90177 0.93747 1.20627 1.03770 0.96824 0.93260 1.25769 1.17284 0.99765 0.97194 1.16281 0.78427 0.85163 0.81642 1.90763 1.51543 1.44752 1.54040 1.48623 1.66340 1.14600 1.03686 1.22178 0.99321 0.92300 0.89548 1.22620 1.00488 0.98165 0.93680 1.19612 0.80077 0.89950 0.89440 1.86085 1.18616 1.43276 1.91253 1.21413 1.27968 0.97448 1.10925 0.91429 1.25082 0.94130 0.98763 0.95211 1.69632 1.27972 1.27915 1.27663 0.86435 0.78359 0.80970 0.81003 1.19990 1.21056 1.19959 1.23383 1.00486 0.82236 0.96456 1.84207 1.59831 0.99974 1.09132 0.90912 0.91734 0.91670 0.93006 0.93022 0.90804 0.90198 0.90326 0.91047 0.88018 0.91606 0.92100 0.90034 0.90293 0.76439 0.91790 0.89334 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -4.20 10.33 -35.23 -0.36 -4.56 16 4 C 0.14 1.44 6.51 36.00 0.23 1.68 16 5 C 0.02 0.27 7.02 -13.29 -0.09 0.18 16 6 N -0.46 -7.20 10.50 -7.70 -0.08 -7.28 16 7 C 0.13 2.22 6.79 -83.89 -0.57 1.65 16 8 C -0.09 -1.28 9.69 36.01 0.35 -0.94 16 9 C -0.28 -4.81 6.40 -37.10 -0.24 -5.05 16 10 C 0.60 12.31 7.81 -12.85 -0.10 12.21 16 11 O -0.53 -12.15 14.53 5.20 0.08 -12.07 16 12 N -0.60 -12.40 3.33 -171.98 -0.57 -12.97 16 13 C 0.09 1.59 5.20 -3.01 -0.02 1.57 16 14 C -0.11 -2.12 6.13 -24.84 -0.15 -2.28 16 15 C 0.25 5.85 0.88 -89.61 -0.08 5.77 16 16 O -0.58 -14.48 13.17 -35.23 -0.46 -14.94 16 17 C -0.54 -13.57 8.25 -34.44 -0.28 -13.85 16 18 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 19 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -23.26 10.69 55.43 0.59 -22.67 16 21 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 C 0.10 2.23 5.51 -2.51 -0.01 2.22 16 26 S 0.21 2.89 18.65 -107.50 -2.00 0.88 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.69 6.02 -51.93 -0.31 1.38 16 37 H 0.07 1.09 6.87 -51.93 -0.36 0.73 16 38 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 39 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 40 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.38 9.88 7.25 45.56 0.33 10.21 16 42 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.09 2.32 7.47 -51.93 -0.39 1.93 16 44 H 0.06 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -29.81 372.65 -8.34 -38.15 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.70 Total: 10.00 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.43 Total: 4.95 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.06 Total: -42.92 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.75 Total: -31.57 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.00 Total: 0.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.81 -8.34 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.207 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds