Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46872 * 2 1 4 4 C 1.42900 * 113.99906 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47373 * 180.02562 * 4 3 2 6 6 N 1.29433 * 124.80685 * 89.97134 * 5 4 3 7 7 C 1.30945 * 117.36581 * 179.73079 * 6 5 4 8 8 C 1.50699 * 122.90408 * 180.35010 * 7 6 5 9 9 C 1.35660 * 114.18951 * 0.53109 * 7 6 5 10 10 C 1.46677 * 126.13081 * 179.78282 * 9 7 6 11 11 O 1.21691 * 120.00086 * 359.71916 * 10 9 7 12 12 N 1.34778 * 120.00054 * 179.71350 * 10 9 7 13 13 C 1.47023 * 125.64931 * 0.04132 * 12 10 9 14 14 C 1.54428 * 107.28135 * 181.02402 * 13 12 10 15 15 C 1.55160 * 102.89386 * 22.18588 * 14 13 12 16 16 O 1.42905 * 111.00102 * 82.59578 * 15 14 13 17 17 C 1.50701 * 111.00410 * 206.40650 * 15 14 13 18 18 H 1.07994 * 120.00187 * 356.81970 * 17 15 14 19 19 C 1.37878 * 119.99769 * 176.82468 * 17 15 14 20 20 N 1.31509 * 120.00073 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47218 * 59.99675 * 21 19 17 23 23 H 1.48498 * 109.46766 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46824 * 299.99519 * 21 19 17 25 25 C 1.47433 * 125.64773 * 179.97438 * 12 10 9 26 26 S 1.70952 * 124.80316 * 270.00322 * 5 4 3 27 27 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46771 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47192 * 59.99639 * 1 2 3 30 30 H 1.08992 * 109.47473 * 240.00011 * 2 1 3 31 31 H 1.09003 * 109.47211 * 119.99841 * 2 1 3 32 32 H 1.09002 * 109.47098 * 59.99777 * 4 3 2 33 33 H 1.09005 * 109.47253 * 300.00092 * 4 3 2 34 34 H 1.08994 * 109.47156 * 270.19621 * 8 7 6 35 35 H 1.09001 * 109.46729 * 30.19742 * 8 7 6 36 36 H 1.08993 * 109.46758 * 150.19626 * 8 7 6 37 37 H 1.08996 * 109.88347 * 300.43906 * 13 12 10 38 38 H 1.09002 * 109.87899 * 61.45748 * 13 12 10 39 39 H 1.08999 * 110.72281 * 263.84993 * 14 13 12 40 40 H 1.08996 * 110.76416 * 140.54540 * 14 13 12 41 41 H 0.96697 * 113.99904 * 183.18164 * 16 15 14 42 42 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.36418 * 37.07392 * 25 12 10 44 44 H 1.08998 * 110.45793 * 274.79533 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 7 4.0090 3.6299 1.0642 7 6 4.3493 4.8830 0.8951 8 6 4.6080 5.8232 2.0441 9 6 4.4449 5.2626 -0.4037 10 6 4.8015 6.5997 -0.8899 11 8 5.0395 7.4920 -0.0974 12 7 4.8658 6.8402 -2.2145 13 6 4.6033 5.8588 -3.2773 14 6 4.8221 6.5753 -4.6277 15 6 5.7445 7.7626 -4.2442 16 8 7.1112 7.3496 -4.1808 17 6 5.5743 8.9111 -5.2049 18 1 4.9157 8.8110 -6.0549 19 6 6.2594 10.0897 -4.9986 20 7 7.0611 10.2117 -3.9633 21 14 6.0478 11.5136 -6.1890 22 1 4.6220 11.9277 -6.2171 23 1 6.8862 12.6569 -5.7472 24 1 6.4667 11.0884 -7.5488 25 6 5.2096 8.1313 -2.8378 26 16 4.0715 3.8594 -1.4022 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9768 0.8908 34 1 3.6780 6.3169 2.3260 35 1 4.9929 5.2604 2.8945 36 1 5.3401 6.5723 1.7427 37 1 5.2939 5.0204 -3.1865 38 1 3.5758 5.5019 -3.2068 39 1 3.8759 6.9366 -5.0304 40 1 5.3185 5.9155 -5.3393 41 1 7.7196 8.0457 -3.8974 42 1 7.5428 11.0410 -3.8180 43 1 5.9818 8.6381 -2.2591 44 1 4.3242 8.7616 -2.9216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -105.947280 kcal Electronic energy + Delta-G solvation = -27463.172233 eV Core-core repulsion = 23506.702438 eV Total energy + Delta-G solvation = -3956.469796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56397 -40.71093 -39.10787 -38.74041 -36.17582 -34.20213 -33.79175 -32.16650 -31.95930 -30.07793 -29.23142 -28.90866 -26.91168 -24.55515 -23.79795 -23.67733 -22.32949 -21.50895 -19.72154 -19.31654 -19.03207 -17.95336 -17.85136 -17.17378 -16.98933 -16.86736 -16.80884 -16.17490 -15.79307 -15.72544 -14.96717 -14.93287 -14.77071 -14.72811 -14.24284 -13.90868 -13.81306 -13.66419 -13.49717 -13.37805 -13.26703 -13.11462 -12.81445 -12.64705 -12.43512 -12.36014 -12.33559 -12.29157 -12.18004 -12.14190 -11.30753 -11.18055 -10.80212 -10.67325 -10.64528 -10.59808 -10.34756 -10.02868 -9.50642 -8.25786 -6.42679 -0.95896 0.04696 0.46477 1.20028 1.44479 1.45342 1.53192 1.88916 1.98305 2.38752 2.54073 3.00235 3.13242 3.43899 3.68099 3.73566 3.92303 4.04338 4.10455 4.15551 4.22717 4.25841 4.32346 4.38636 4.46786 4.54349 4.62367 4.65631 4.67776 4.81143 4.86837 4.97354 5.00556 5.06138 5.17208 5.26777 5.29625 5.33353 5.42411 5.74539 6.03012 6.11902 6.39108 6.51290 6.65453 6.94208 7.27722 7.35187 8.79650 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002768 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.870102 B =10114.511810 C =10974.144356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.407 6.407 4 C 0.140 3.860 5 C 0.032 3.968 6 N -0.480 5.480 7 C 0.137 3.863 8 C -0.084 4.084 9 C -0.320 4.320 10 C 0.594 3.406 11 O -0.569 6.569 12 N -0.608 5.608 13 C 0.092 3.908 14 C -0.105 4.105 15 C 0.234 3.766 16 O -0.588 6.588 17 C -0.555 4.555 18 H 0.073 0.927 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.269 1.269 25 C 0.109 3.891 26 S 0.262 5.738 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.376 0.624 42 H 0.270 0.730 43 H 0.049 0.951 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 -21.031 4.914 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.327 6.327 4 C 0.060 3.940 5 C -0.242 4.242 6 N -0.197 5.197 7 C -0.002 4.002 8 C -0.143 4.143 9 C -0.444 4.444 10 C 0.383 3.617 11 O -0.451 6.451 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.143 4.143 15 C 0.194 3.806 16 O -0.396 6.396 17 C -0.593 4.593 18 H 0.091 0.909 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.194 1.194 25 C -0.014 4.014 26 S 0.521 5.479 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.648 -21.420 4.656 23.949 hybrid contribution 0.729 2.302 0.671 2.506 sum -8.919 -19.118 5.326 21.758 Atomic orbital electron populations 1.21791 0.93231 1.03519 1.02457 1.22766 0.96064 0.81727 1.01943 1.87939 1.19577 1.29382 1.95830 1.20979 0.82870 0.85454 1.04678 1.27782 1.01017 1.02329 0.93107 1.66130 1.16074 1.04816 1.32686 1.20807 0.94773 0.90832 0.93818 1.20592 1.03468 0.96517 0.93732 1.25466 1.20481 0.99785 0.98621 1.16713 0.77576 0.86244 0.81197 1.90729 1.53046 1.46459 1.54867 1.48634 1.66593 1.14181 1.04477 1.22331 1.01436 0.91680 0.87648 1.22633 1.00058 0.96735 0.94898 1.19850 0.79934 0.91805 0.89052 1.86074 1.19348 1.43006 1.91200 1.21759 1.27956 0.98242 1.11351 0.90926 1.25826 0.93997 1.01080 0.96552 1.69756 1.28649 1.28216 1.28949 0.85505 0.78255 0.78081 0.79183 1.19526 1.21314 1.19353 1.22954 0.98580 0.83373 0.96480 1.83814 1.58690 0.97445 1.07915 0.88677 0.92933 0.92396 0.91023 0.91814 0.87551 0.88806 0.89807 0.89019 0.90201 0.90264 0.89146 0.88591 0.88802 0.77435 0.92058 0.93200 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.41 -7.72 10.33 -148.98 -1.54 -9.26 16 4 C 0.14 2.29 6.51 71.23 0.46 2.75 16 5 C 0.03 0.78 7.02 88.46 0.62 1.40 16 6 N -0.48 -14.19 10.50 -178.29 -1.87 -16.06 16 7 C 0.14 4.49 6.79 42.09 0.29 4.77 16 8 C -0.08 -2.55 9.69 71.24 0.69 -1.86 16 9 C -0.32 -11.00 6.40 23.88 0.15 -10.85 16 10 C 0.59 25.06 7.81 86.45 0.68 25.74 16 11 O -0.57 -27.42 14.53 -4.32 -0.06 -27.49 16 12 N -0.61 -25.34 3.33 -816.23 -2.72 -28.06 16 13 C 0.09 3.06 5.20 86.76 0.45 3.51 16 14 C -0.11 -3.84 6.13 31.82 0.20 -3.65 16 15 C 0.23 11.04 0.88 -10.14 -0.01 11.03 16 16 O -0.59 -29.69 13.17 -148.98 -1.96 -31.65 16 17 C -0.55 -28.02 8.25 25.60 0.21 -27.81 16 18 H 0.07 3.51 7.78 -2.91 -0.02 3.48 16 19 C 0.03 1.35 5.29 84.66 0.45 1.80 16 20 N -0.92 -49.28 10.69 21.45 0.23 -49.05 16 21 Si 0.96 41.02 29.54 68.60 2.03 43.05 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 C 0.11 5.28 5.51 86.86 0.48 5.75 16 26 S 0.26 6.52 18.65 -56.49 -1.05 5.46 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 2.80 6.02 -2.39 -0.01 2.78 16 37 H 0.08 2.42 6.87 -2.39 -0.02 2.40 16 38 H 0.09 2.47 7.02 -2.39 -0.02 2.46 16 39 H 0.10 3.20 8.03 -2.39 -0.02 3.18 16 40 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.38 20.09 7.25 -74.06 -0.54 19.55 16 42 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.05 2.78 7.47 -2.39 -0.02 2.76 16 44 H 0.05 2.54 8.03 -2.39 -0.02 2.52 16 Total: -1.00 -66.68 372.65 -0.57 -67.25 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.49 Total: 33.06 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.88 Total: 12.75 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -4.36 Total: -93.17 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -3.56 Total: -68.40 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.05 Total: 5.46 kcal Total: -66.68 -0.57 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.696 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds