Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47286 * 2 1 4 4 C 1.42906 * 114.00150 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47318 * 180.02562 * 4 3 2 6 6 N 1.29432 * 124.80653 * 90.02119 * 5 4 3 7 7 C 1.30940 * 117.36721 * 180.02562 * 6 5 4 8 8 C 1.50699 * 122.90532 * 179.97438 * 7 6 5 9 9 C 1.35663 * 114.19121 * 359.97438 * 7 6 5 10 10 C 1.46674 * 126.13268 * 180.02562 * 9 7 6 11 11 O 1.21687 * 120.00029 * 0.02562 * 10 9 7 12 12 N 1.34784 * 119.99958 * 180.02562 * 10 9 7 13 13 C 1.47014 * 125.65042 * 0.02562 * 12 10 9 14 14 C 1.54327 * 107.27187 * 178.89586 * 13 12 10 15 15 C 1.55149 * 102.94214 * 337.80814 * 14 13 12 16 16 O 1.42903 * 111.00594 * 277.43081 * 15 14 13 17 17 C 1.50694 * 111.00456 * 153.61700 * 15 14 13 18 18 H 1.07991 * 120.00193 * 3.17397 * 17 15 14 19 19 C 1.37884 * 119.99946 * 183.18304 * 17 15 14 20 20 N 1.31508 * 119.99961 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00010 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47028 * 89.99282 * 21 19 17 23 23 H 1.48497 * 109.47433 * 209.99661 * 21 19 17 24 24 H 1.48500 * 109.47121 * 329.99953 * 21 19 17 25 25 C 1.47419 * 125.64520 * 179.97438 * 12 10 9 26 26 S 1.70952 * 124.80527 * 270.34143 * 5 4 3 27 27 H 1.09007 * 109.47087 * 299.99926 * 1 2 3 28 28 H 1.09001 * 109.47309 * 59.99299 * 1 2 3 29 29 H 1.08996 * 109.47497 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47087 * 240.00074 * 2 1 3 31 31 H 1.08997 * 109.47258 * 120.00176 * 2 1 3 32 32 H 1.09000 * 109.47011 * 59.99910 * 4 3 2 33 33 H 1.08999 * 109.46720 * 299.99827 * 4 3 2 34 34 H 1.09006 * 109.46805 * 270.03351 * 8 7 6 35 35 H 1.09004 * 109.47291 * 30.03790 * 8 7 6 36 36 H 1.08998 * 109.47344 * 150.03895 * 8 7 6 37 37 H 1.08999 * 109.88292 * 59.47383 * 13 12 10 38 38 H 1.09001 * 109.88362 * 298.31575 * 13 12 10 39 39 H 1.09002 * 110.71297 * 219.44414 * 14 13 12 40 40 H 1.09000 * 110.86709 * 96.24207 * 14 13 12 41 41 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99988 * 180.02562 * 20 19 17 43 43 H 1.09009 * 110.36844 * 85.33693 * 25 12 10 44 44 H 1.09002 * 110.37005 * 323.01192 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 7 4.0109 3.6291 1.0632 7 6 4.3451 4.8838 0.8942 8 6 4.5970 5.8258 2.0433 9 6 4.4450 5.2625 -0.4046 10 6 4.8014 6.5997 -0.8907 11 8 5.0407 7.4914 -0.0981 12 7 4.8640 6.8407 -2.2154 13 6 4.6000 5.8598 -3.2782 14 6 4.7642 6.5907 -4.6274 15 6 4.5571 8.0796 -4.2435 16 8 3.1667 8.4028 -4.1765 17 6 5.2745 8.9905 -5.2060 18 1 5.7936 8.5755 -6.0572 19 6 5.2685 10.3538 -4.9997 20 7 4.6362 10.8592 -3.9632 21 14 6.1585 11.4829 -6.1924 22 1 5.2275 11.8926 -7.2744 23 1 6.6380 12.6879 -5.4692 24 1 7.3174 10.7655 -6.7819 25 6 5.2074 8.1318 -2.8384 26 16 4.0624 3.8618 -1.4031 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9766 -0.8908 33 1 3.8340 0.9764 0.8892 34 1 3.6645 6.3171 2.3214 35 1 4.9806 5.2649 2.8956 36 1 5.3280 6.5769 1.7439 37 1 3.5837 5.4769 -3.1852 38 1 5.3147 5.0396 -3.2115 39 1 4.0031 6.2659 -5.3370 40 1 5.7625 6.4329 -5.0355 41 1 2.9876 9.3232 -3.9402 42 1 4.6316 11.8183 -3.8183 43 1 6.2891 8.2357 -2.9247 44 1 4.7915 8.9556 -2.2582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -84.441453 kcal Electronic energy + Delta-G solvation = -27484.561106 eV Core-core repulsion = 23529.023873 eV Total energy + Delta-G solvation = -3955.537233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23831 -39.24754 -38.24959 -37.14728 -34.39780 -32.80815 -32.24193 -31.25112 -30.45717 -28.55499 -28.05495 -27.58895 -25.11830 -23.13613 -23.06071 -22.67981 -20.92075 -19.73014 -18.31091 -18.05412 -17.26271 -17.10587 -16.61938 -16.08024 -15.68532 -15.47829 -15.18485 -14.57441 -14.46981 -14.31334 -13.96162 -13.43156 -13.27494 -13.12611 -13.08226 -12.89120 -12.72228 -12.32675 -12.31596 -12.12258 -11.76061 -11.69955 -11.57524 -11.52127 -11.26548 -11.08355 -10.92309 -10.74309 -10.53218 -10.26925 -10.06200 -9.72982 -9.56821 -9.41773 -9.33100 -8.82479 -8.73842 -8.44474 -7.88105 -6.33958 -4.44319 0.24038 1.20414 1.63384 2.42784 3.17208 3.25495 3.27430 3.31636 3.49403 3.50872 4.03988 4.21951 4.59799 4.70057 4.83545 4.89341 4.95245 4.99245 5.01350 5.03745 5.18609 5.24887 5.34628 5.48084 5.57342 5.68771 5.80080 5.80695 5.85936 5.89113 5.95907 6.08952 6.39219 6.45612 6.62315 6.75347 6.75785 6.84958 7.17599 7.26530 7.63530 7.68441 7.92000 8.03743 8.53022 8.60288 9.25132 9.35740 10.73100 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.002807 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.514932 B = 9971.672462 C =10848.100374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.380 6.380 4 C 0.144 3.856 5 C 0.020 3.980 6 N -0.460 5.460 7 C 0.134 3.866 8 C -0.086 4.086 9 C -0.276 4.276 10 C 0.598 3.402 11 O -0.531 6.531 12 N -0.601 5.601 13 C 0.091 3.909 14 C -0.112 4.112 15 C 0.250 3.750 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.096 3.904 26 S 0.210 5.790 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.385 0.615 42 H 0.272 0.728 43 H 0.065 0.935 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -19.575 5.768 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.299 6.299 4 C 0.064 3.936 5 C -0.255 4.255 6 N -0.177 5.177 7 C -0.004 4.004 8 C -0.145 4.145 9 C -0.400 4.400 10 C 0.385 3.615 11 O -0.411 6.411 12 N -0.332 5.332 13 C -0.033 4.033 14 C -0.150 4.150 15 C 0.209 3.791 16 O -0.393 6.393 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.025 4.025 26 S 0.469 5.531 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.697 -19.936 5.575 20.876 hybrid contribution 0.769 1.431 0.297 1.651 sum -1.928 -18.506 5.873 19.511 Atomic orbital electron populations 1.21750 0.93400 1.02326 1.03483 1.22516 0.95904 0.83124 1.00338 1.87991 1.19366 1.27048 1.95508 1.20708 0.82749 0.87860 1.02300 1.27017 1.03878 1.00943 0.93650 1.66018 1.14586 1.05235 1.31849 1.20584 0.95929 0.90172 0.93747 1.20631 1.03872 0.96770 0.93222 1.25769 1.17222 0.99835 0.97196 1.16279 0.78439 0.85147 0.81645 1.90761 1.51647 1.44663 1.54032 1.48619 1.66278 1.14648 1.03683 1.22155 0.99885 0.91741 0.89538 1.22604 1.02160 0.96537 0.93708 1.19607 0.80379 0.89697 0.89444 1.86082 1.25342 1.34836 1.93019 1.21454 1.34214 0.91342 1.10748 0.91357 1.25095 0.94575 0.98374 0.95212 1.69643 1.42245 1.13677 1.27573 0.86379 0.79853 0.79880 0.80666 1.20346 1.20970 1.19673 1.23369 0.99891 0.82739 0.96504 1.84203 1.59816 0.99963 1.09136 0.91717 0.91627 0.90917 0.93026 0.93045 0.90842 0.90219 0.90256 0.91080 0.88047 0.91551 0.92134 0.90325 0.90038 0.76351 0.91821 0.91705 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.66 16 2 C 0.06 0.44 6.66 37.15 0.25 0.68 16 3 O -0.38 -4.29 10.33 -35.23 -0.36 -4.65 16 4 C 0.14 1.45 6.51 36.00 0.23 1.68 16 5 C 0.02 0.27 7.02 -13.29 -0.09 0.17 16 6 N -0.46 -7.21 10.50 -7.70 -0.08 -7.29 16 7 C 0.13 2.23 6.79 -83.89 -0.57 1.66 16 8 C -0.09 -1.29 9.70 36.00 0.35 -0.94 16 9 C -0.28 -4.82 6.40 -37.10 -0.24 -5.06 16 10 C 0.60 12.34 7.81 -12.85 -0.10 12.24 16 11 O -0.53 -12.18 14.52 5.20 0.08 -12.10 16 12 N -0.60 -12.42 3.33 -172.06 -0.57 -13.00 16 13 C 0.09 1.60 5.19 -3.07 -0.02 1.58 16 14 C -0.11 -2.14 6.13 -24.90 -0.15 -2.29 16 15 C 0.25 5.86 0.89 -89.63 -0.08 5.78 16 16 O -0.58 -14.61 13.19 -35.23 -0.46 -15.08 16 17 C -0.54 -13.55 8.26 -34.44 -0.28 -13.84 16 18 H 0.07 1.67 7.78 -52.49 -0.41 1.27 16 19 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 20 N -0.89 -23.28 10.68 55.43 0.59 -22.69 16 21 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 C 0.10 2.25 5.51 -2.53 -0.01 2.24 16 26 S 0.21 2.90 18.65 -107.50 -2.00 0.89 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.67 6.00 -51.93 -0.31 1.36 16 37 H 0.07 1.12 6.86 -51.93 -0.36 0.77 16 38 H 0.06 0.90 7.04 -51.93 -0.37 0.53 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 41 H 0.39 9.99 7.18 45.56 0.33 10.32 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.06 1.55 8.03 -51.92 -0.42 1.13 16 44 H 0.09 2.34 7.48 -51.93 -0.39 1.95 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -29.95 372.57 -8.35 -38.30 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.70 Total: 10.21 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.43 Total: 4.95 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.06 Total: -42.98 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.75 Total: -31.84 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.00 Total: 0.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.95 -8.35 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.140 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds