Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47286 * 2 1 4 4 C 1.42906 * 114.00150 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47318 * 180.02562 * 4 3 2 6 6 N 1.29432 * 124.80653 * 90.02119 * 5 4 3 7 7 C 1.30940 * 117.36721 * 180.02562 * 6 5 4 8 8 C 1.50699 * 122.90532 * 179.97438 * 7 6 5 9 9 C 1.35663 * 114.19121 * 359.97438 * 7 6 5 10 10 C 1.46674 * 126.13268 * 180.02562 * 9 7 6 11 11 O 1.21687 * 120.00029 * 0.02562 * 10 9 7 12 12 N 1.34784 * 119.99958 * 180.02562 * 10 9 7 13 13 C 1.47014 * 125.65042 * 0.02562 * 12 10 9 14 14 C 1.54327 * 107.27187 * 178.89586 * 13 12 10 15 15 C 1.55149 * 102.94214 * 337.80814 * 14 13 12 16 16 O 1.42903 * 111.00594 * 277.43081 * 15 14 13 17 17 C 1.50694 * 111.00456 * 153.61700 * 15 14 13 18 18 H 1.07991 * 120.00193 * 3.17397 * 17 15 14 19 19 C 1.37884 * 119.99946 * 183.18304 * 17 15 14 20 20 N 1.31508 * 119.99961 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00010 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47028 * 89.99282 * 21 19 17 23 23 H 1.48497 * 109.47433 * 209.99661 * 21 19 17 24 24 H 1.48500 * 109.47121 * 329.99953 * 21 19 17 25 25 C 1.47419 * 125.64520 * 179.97438 * 12 10 9 26 26 S 1.70952 * 124.80527 * 270.34143 * 5 4 3 27 27 H 1.09007 * 109.47087 * 299.99926 * 1 2 3 28 28 H 1.09001 * 109.47309 * 59.99299 * 1 2 3 29 29 H 1.08996 * 109.47497 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47087 * 240.00074 * 2 1 3 31 31 H 1.08997 * 109.47258 * 120.00176 * 2 1 3 32 32 H 1.09000 * 109.47011 * 59.99910 * 4 3 2 33 33 H 1.08999 * 109.46720 * 299.99827 * 4 3 2 34 34 H 1.09006 * 109.46805 * 270.03351 * 8 7 6 35 35 H 1.09004 * 109.47291 * 30.03790 * 8 7 6 36 36 H 1.08998 * 109.47344 * 150.03895 * 8 7 6 37 37 H 1.08999 * 109.88292 * 59.47383 * 13 12 10 38 38 H 1.09001 * 109.88362 * 298.31575 * 13 12 10 39 39 H 1.09002 * 110.71297 * 219.44414 * 14 13 12 40 40 H 1.09000 * 110.86709 * 96.24207 * 14 13 12 41 41 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99988 * 180.02562 * 20 19 17 43 43 H 1.09009 * 110.36844 * 85.33693 * 25 12 10 44 44 H 1.09002 * 110.37005 * 323.01192 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 7 4.0109 3.6291 1.0632 7 6 4.3451 4.8838 0.8942 8 6 4.5970 5.8258 2.0433 9 6 4.4450 5.2625 -0.4046 10 6 4.8014 6.5997 -0.8907 11 8 5.0407 7.4914 -0.0981 12 7 4.8640 6.8407 -2.2154 13 6 4.6000 5.8598 -3.2782 14 6 4.7642 6.5907 -4.6274 15 6 4.5571 8.0796 -4.2435 16 8 3.1667 8.4028 -4.1765 17 6 5.2745 8.9905 -5.2060 18 1 5.7936 8.5755 -6.0572 19 6 5.2685 10.3538 -4.9997 20 7 4.6362 10.8592 -3.9632 21 14 6.1585 11.4829 -6.1924 22 1 5.2275 11.8926 -7.2744 23 1 6.6380 12.6879 -5.4692 24 1 7.3174 10.7655 -6.7819 25 6 5.2074 8.1318 -2.8384 26 16 4.0624 3.8618 -1.4031 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9766 -0.8908 33 1 3.8340 0.9764 0.8892 34 1 3.6645 6.3171 2.3214 35 1 4.9806 5.2649 2.8956 36 1 5.3280 6.5769 1.7439 37 1 3.5837 5.4769 -3.1852 38 1 5.3147 5.0396 -3.2115 39 1 4.0031 6.2659 -5.3370 40 1 5.7625 6.4329 -5.0355 41 1 2.9876 9.3232 -3.9402 42 1 4.6316 11.8183 -3.8183 43 1 6.2891 8.2357 -2.9247 44 1 4.7915 8.9556 -2.2582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -106.206181 kcal Electronic energy + Delta-G solvation = -27485.504895 eV Core-core repulsion = 23529.023873 eV Total energy + Delta-G solvation = -3956.481022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56322 -40.71054 -39.11022 -38.74280 -36.18905 -34.20118 -33.79091 -32.16980 -31.96139 -30.07936 -29.23350 -28.90882 -26.91557 -24.55271 -23.79628 -23.68023 -22.32720 -21.50655 -19.72008 -19.32071 -19.04796 -17.94967 -17.85788 -17.16938 -16.97628 -16.86408 -16.82329 -16.16704 -15.78402 -15.73199 -14.97130 -14.92340 -14.78471 -14.72203 -14.24149 -13.90405 -13.79485 -13.68982 -13.53246 -13.40851 -13.21088 -13.11526 -12.84680 -12.66783 -12.41968 -12.35376 -12.33472 -12.25253 -12.18132 -12.14532 -11.30999 -11.17995 -10.79866 -10.67425 -10.66234 -10.58135 -10.36188 -10.02092 -9.50400 -8.26207 -6.43548 -0.95859 0.04993 0.46535 1.20139 1.42938 1.45485 1.54801 1.88161 1.99455 2.38463 2.55131 2.99830 3.13120 3.44080 3.68166 3.73776 3.92529 4.04191 4.11238 4.15750 4.22502 4.25842 4.32394 4.38584 4.47013 4.54062 4.62292 4.65782 4.68334 4.81281 4.86400 4.97549 5.01157 5.05716 5.17506 5.26736 5.29304 5.34255 5.42554 5.74420 6.01619 6.12527 6.39357 6.51479 6.65355 6.94412 7.27612 7.34795 8.79224 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.002807 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.514932 B = 9971.672462 C =10848.100374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.409 6.409 4 C 0.139 3.861 5 C 0.032 3.968 6 N -0.480 5.480 7 C 0.137 3.863 8 C -0.085 4.085 9 C -0.320 4.320 10 C 0.594 3.406 11 O -0.569 6.569 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.106 4.106 15 C 0.233 3.767 16 O -0.590 6.590 17 C -0.554 4.554 18 H 0.074 0.926 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.109 3.891 26 S 0.262 5.738 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.376 0.624 42 H 0.270 0.730 43 H 0.052 0.948 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -22.905 4.786 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.329 6.329 4 C 0.060 3.940 5 C -0.243 4.243 6 N -0.197 5.197 7 C -0.002 4.002 8 C -0.143 4.143 9 C -0.444 4.444 10 C 0.383 3.617 11 O -0.451 6.451 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.144 4.144 15 C 0.192 3.808 16 O -0.398 6.398 17 C -0.592 4.592 18 H 0.092 0.908 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.013 4.013 26 S 0.522 5.478 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.559 -23.318 4.560 23.898 hybrid contribution 0.662 2.341 0.651 2.519 sum -1.897 -20.977 5.211 21.698 Atomic orbital electron populations 1.21797 0.93360 1.03520 1.02399 1.22760 0.95982 0.81709 1.01988 1.87945 1.19715 1.29429 1.95837 1.20993 0.82795 0.85449 1.04755 1.27800 1.01066 1.02299 0.93097 1.66127 1.16083 1.04807 1.32688 1.20805 0.94786 0.90839 0.93815 1.20598 1.03433 0.96522 0.93784 1.25466 1.20408 0.99860 0.98628 1.16714 0.77593 0.86227 0.81204 1.90727 1.53157 1.46381 1.54866 1.48631 1.66535 1.14225 1.04475 1.22314 1.01475 0.91649 0.87642 1.22621 1.03604 0.93247 0.94894 1.19867 0.79360 0.92431 0.89112 1.86072 1.26604 1.34136 1.92996 1.21788 1.34309 0.91953 1.11145 0.90813 1.25845 0.95280 0.99858 0.96556 1.69768 1.43283 1.13682 1.28917 0.85437 0.78951 0.77901 0.78644 1.20056 1.21361 1.18785 1.22944 0.98739 0.83195 0.96469 1.83810 1.58704 0.97397 1.07924 0.92984 0.92520 0.88611 0.90961 0.91719 0.87428 0.88707 0.90161 0.88887 0.89981 0.90629 0.88754 0.88960 0.88380 0.77379 0.92058 0.92929 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -8.01 10.33 -148.98 -1.54 -9.55 16 4 C 0.14 2.28 6.51 71.24 0.46 2.75 16 5 C 0.03 0.77 7.02 88.46 0.62 1.39 16 6 N -0.48 -14.21 10.50 -178.29 -1.87 -16.08 16 7 C 0.14 4.49 6.79 42.09 0.29 4.78 16 8 C -0.08 -2.57 9.70 71.24 0.69 -1.88 16 9 C -0.32 -11.03 6.40 23.88 0.15 -10.88 16 10 C 0.59 25.12 7.81 86.44 0.68 25.79 16 11 O -0.57 -27.51 14.52 -4.31 -0.06 -27.57 16 12 N -0.61 -25.39 3.33 -816.49 -2.72 -28.11 16 13 C 0.09 3.07 5.19 86.73 0.45 3.52 16 14 C -0.11 -3.86 6.13 31.78 0.19 -3.66 16 15 C 0.23 11.02 0.89 -10.15 -0.01 11.01 16 16 O -0.59 -30.12 13.19 -148.98 -1.96 -32.09 16 17 C -0.55 -27.90 8.26 25.60 0.21 -27.69 16 18 H 0.07 3.55 7.78 -2.92 -0.02 3.53 16 19 C 0.03 1.30 5.27 84.66 0.45 1.75 16 20 N -0.92 -49.44 10.68 21.45 0.23 -49.21 16 21 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 25 C 0.11 5.30 5.51 86.86 0.48 5.78 16 26 S 0.26 6.54 18.65 -56.49 -1.05 5.48 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 2.84 6.00 -2.39 -0.01 2.82 16 37 H 0.08 2.38 6.86 -2.39 -0.02 2.36 16 38 H 0.09 2.50 7.04 -2.39 -0.02 2.48 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.10 3.22 8.02 -2.39 -0.02 3.21 16 41 H 0.38 20.35 7.18 -74.06 -0.53 19.82 16 42 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.05 2.62 8.03 -2.38 -0.02 2.60 16 44 H 0.05 2.72 7.48 -2.39 -0.02 2.70 16 Total: -1.00 -67.24 372.57 -0.57 -67.82 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.50 Total: 33.61 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.88 Total: 12.72 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.36 Total: -93.39 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -3.57 Total: -69.20 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.05 Total: 5.48 kcal Total: -67.24 -0.57 -67.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.391 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds